Clone GH08407 Report

Search the DGRC for GH08407

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:84
Well:7
Vector:pOT2
Associated Gene/Transcripthmw-RA
Protein status:GH08407.pep: gold
Preliminary Size:2008
Sequenced Size:2059

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7669 2001-01-01 Release 2 assignment
CG7669 2001-11-09 Blastp of sequenced clone
CG7669 2003-01-01 Sim4 clustering to Release 3
CG7669 2008-04-29 Release 5.5 accounting
CG7669 2008-08-15 Release 5.9 accounting
CG7669 2008-12-18 5.12 accounting

Clone Sequence Records

GH08407.complete Sequence

2059 bp (2059 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069067

> GH08407.complete
CACACGGGTGACAACGCTAATACCCCAAAAAAAACAAAATACACTACAAA
CGACGAAAGGAACTTAATCAGAGAACCGACGAAGAATAAGCATACAGGAT
GTCGGGGGCTGGAGAACACTCAGATGAAGAGTCCTATGGAGAGGAGTCCT
TCGAGGAGGACTCGGAGTCGGAGGTGGAGGTGGAGGAAGAAGAGATTGAG
TATATTGAGCCAGAGGAGTCAAAACCAAGTGACGCTCTTCTGTTGGGGGA
GAGCGACACCCAAAGCGAGAGCGATGTGAAAGAAGAGTTTCTTAGCGGCA
ACCCACACGCCCGTCGCTATTTGGGCGCCCGAGTGGTGTCCTACCTGAGT
TCCTCCTCTGACGACGAAAGCCAAGTGGTCATCACCAAGACGGTAGCCGA
GGTAAATCAACTAAGTCTGCGAGTGGACACGCCTCCGGAGGATGAGACGC
CCTCGGTGCGCACTCTGATGCCAGGCAGTGCCCATTCTCGGGTTAAGGAT
GAGGACGAGGCTGAAGACGAGGATGATGACGAAGGTGATGGCGAAAATGA
TAACGATAATGAGGACGAGAATGATGACGAGGATGCTGAAGTCGAGGAAA
TCGAAGAAGAGGAGGAAGAAATTCCAGGAGACGAAGACGACGCCCAAAGC
GATGGATCCATGGGTCGTCAATCCGCCGACGACAGCGACGAGGAGGAGGG
CACGGATGTGGAAGTGGAGCAGCTGGAGGAGGACGAACCAATTGTAACAG
CTGTGTGCAAAAAGACGGTCCAGAAGGAGTTACCACCGCCCCAGAAGGAC
ATTGTTTCGCTGGTCGATGCCAGTGATAACAGTAGTGAGCACAGTGTGGT
CACCATGTGTGCATCAGGAGACGAAACAGACAACACCTTGGTGAAGTATC
CTAGATTACGAAAGCAGCAACCACTTACTGCTAAGGATTCGCAATCGCTA
AAAGAGCAGGAAGAACCGGAAGAACCGGAACAACCCGAAGAAAATCAAAC
AGAAGAACACATGCCAACATCACAGCCCGATCTGGCGAGGGTTCGGTACC
TGGAGCAGCAGATGACCCAAATGTCGGAATTGATCATGAAGTCATTCCAG
ATCAATGGAGGAGCGCCAAATAGCCAAGCCTTCGAGCAGCTTGCCATGGC
CACGGAGATGTTGCAGCAACGAAGTGACAGGCGCGGGGACACTGAATCCG
AGATGTCATCGATGACGGAAACGACTATGACCAGTGCTAGGAGCTTGGGT
GGAGGAATTCCCCCCCTGACAATGCGGATGGAGCGTTCTCAGGAGGCACT
ACTCACGACGCGATCTTCCAAGCTACCCAGACCCAAATGCAGATGTCCCT
CGGAATCGGATTTAATTGAACACGAGCAGAAACTGGATATGGGTCACGAG
TTGCCCCATGACCTGGCAGCGAACTTCGGCTTGGGCGAAGGCTACCTCGT
AGACGAATGTGGCCAGGGCGACGGACTCATGAGGCATCCACAACAGCGCA
AACCAATGGAGTTAAACAGGCGAGCCGTTAGCGGAACTCCAAGCACCTTC
AACAGCGACGGTTGCGAGTATCAAATCAATGTGTCGCGTTCCCGCTGCTC
TAATGATAAGATTAACTATAAAAACCTTGGGCGCAAAAGCTTTAGCTTTA
CGAATCCCCAAGTGCGCGAGATCGAGCGCCAGAATCAGATTCTTTTGCGC
AAGATGATGACTGTGAAGCCCACGGCGACGATCAAGGCTAGCACCAGTAG
CATAAAGATCAATGGGCCCGAGAAGCGACAGACACCTCCAGCGCCACGAC
TGTCCAGCGCAGCTGTGAACCGGAAGAAGAATCAGCGCCAGATCGACCTG
GACAACGATCTGCTCAAGCGGAAACTGGAGGCCATCGGCACACGGCGACC
GCAATTCAAGTGACGCCTCCACAGGCAGCTCCAACTGTGTTCATTAAGTA
ATTAAAAGTGTTTATGCGAATTTACAAAATTAAAATTTATTGCAAGTTGA
AAAGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

GH08407.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7669-RA 2088 CG7669-RA 82..2088 1..2007 10035 100 Plus
WRNexo-RA 1532 WRNexo-RA 1490..1532 2012..1970 215 100 Minus
WRNexo-RB 1535 WRNexo-RB 1493..1535 2012..1970 215 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14187277..14187977 915..1615 3490 99.9 Plus
chr3R 27901430 chr3R 14186610..14187224 303..917 3000 99.2 Plus
chr3R 27901430 chr3R 14186236..14186537 1..302 1510 100 Plus
chr3R 27901430 chr3R 14188252..14188485 1774..2007 1140 99.1 Plus
chr3R 27901430 chr3R 14188032..14188191 1616..1775 800 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18363069..18363769 915..1615 3505 100 Plus
3R 32079331 3R 18362402..18363016 303..917 3075 100 Plus
3R 32079331 3R 18362028..18362329 1..302 1510 100 Plus
3R 32079331 3R 18364044..18364282 1774..2012 1195 100 Plus
3R 32079331 3R 18363824..18363983 1616..1775 800 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18103900..18104600 915..1615 3505 100 Plus
3R 31820162 3R 18103233..18103847 303..917 3075 100 Plus
3R 31820162 3R 18102859..18103160 1..302 1510 100 Plus
3R 31820162 3R 18104875..18105113 1774..2012 1195 100 Plus
3R 31820162 3R 18104655..18104814 1616..1775 800 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:48:21 has no hits.

GH08407.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:48:59 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14186236..14186537 1..302 100 -> Plus
chr3R 14186610..14186804 303..497 100 == Plus
chr3R 14186897..14187224 590..917 98 -> Plus
chr3R 14187280..14187977 918..1615 95 -> Plus
chr3R 14188032..14188191 1616..1775 100 -> Plus
chr3R 14188254..14188485 1776..2007 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:17 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 1..1815 99..1913 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:27 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 1..1815 99..1913 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:57 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 1..1815 99..1913 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:01 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 1..1815 99..1913 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:13 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
hmw-RA 1..1815 99..1913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:31 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 35..2041 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:27 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 35..2041 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:57 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 35..2041 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:02 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 35..2041 1..2007 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:13 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
hmw-RA 35..2041 1..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:59 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18362028..18362329 1..302 100 -> Plus
3R 18362402..18363016 303..917 100 -> Plus
3R 18363072..18363769 918..1615 100 -> Plus
3R 18363824..18363983 1616..1775 100 -> Plus
3R 18364046..18364277 1776..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:59 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18362028..18362329 1..302 100 -> Plus
3R 18362402..18363016 303..917 100 -> Plus
3R 18363072..18363769 918..1615 100 -> Plus
3R 18363824..18363983 1616..1775 100 -> Plus
3R 18364046..18364277 1776..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:48:59 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18362028..18362329 1..302 100 -> Plus
3R 18362402..18363016 303..917 100 -> Plus
3R 18363072..18363769 918..1615 100 -> Plus
3R 18363824..18363983 1616..1775 100 -> Plus
3R 18364046..18364277 1776..2007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:57 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14187750..14188051 1..302 100 -> Plus
arm_3R 14188124..14188738 303..917 100 -> Plus
arm_3R 14188794..14189491 918..1615 100 -> Plus
arm_3R 14189546..14189705 1616..1775 100 -> Plus
arm_3R 14189768..14189999 1776..2007 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:51 Download gff for GH08407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18102859..18103160 1..302 100 -> Plus
3R 18103233..18103847 303..917 100 -> Plus
3R 18103903..18104600 918..1615 100 -> Plus
3R 18104655..18104814 1616..1775 100 -> Plus
3R 18104877..18105108 1776..2007 100   Plus

GH08407.pep Sequence

Translation from 98 to 1912

> GH08407.pep
MSGAGEHSDEESYGEESFEEDSESEVEVEEEEIEYIEPEESKPSDALLLG
ESDTQSESDVKEEFLSGNPHARRYLGARVVSYLSSSSDDESQVVITKTVA
EVNQLSLRVDTPPEDETPSVRTLMPGSAHSRVKDEDEAEDEDDDEGDGEN
DNDNEDENDDEDAEVEEIEEEEEEIPGDEDDAQSDGSMGRQSADDSDEEE
GTDVEVEQLEEDEPIVTAVCKKTVQKELPPPQKDIVSLVDASDNSSEHSV
VTMCASGDETDNTLVKYPRLRKQQPLTAKDSQSLKEQEEPEEPEQPEENQ
TEEHMPTSQPDLARVRYLEQQMTQMSELIMKSFQINGGAPNSQAFEQLAM
ATEMLQQRSDRRGDTESEMSSMTETTMTSARSLGGGIPPLTMRMERSQEA
LLTTRSSKLPRPKCRCPSESDLIEHEQKLDMGHELPHDLAANFGLGEGYL
VDECGQGDGLMRHPQQRKPMELNRRAVSGTPSTFNSDGCEYQINVSRSRC
SNDKINYKNLGRKSFSFTNPQVREIERQNQILLRKMMTVKPTATIKASTS
SIKINGPEKRQTPPAPRLSSAAVNRKKNQRQIDLDNDLLKRKLEAIGTRR
PQFK*

GH08407.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16900-PA 629 GF16900-PA 1..629 1..604 1602 58 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22859-PA 599 GG22859-PA 1..599 1..604 2134 75.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18340-PA 536 GH18340-PA 40..536 52..604 788 39.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-PA 604 CG7669-PA 1..604 1..604 3096 100 Plus
l(2)01289-PG 1191 CG9432-PG 740..920 114..311 169 25.7 Plus
l(2)01289-PM 1193 CG9432-PM 740..920 114..311 169 25.7 Plus
Sh3beta-PE 485 CG8582-PE 179..473 4..311 160 20.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23321-PA 541 GI23321-PA 7..170 7..166 176 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24340-PA 708 GL24340-PA 298..708 228..604 727 44.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20512-PB 646 GA20512-PB 5..646 9..604 881 40.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17864-PA 612 GM17864-PA 1..612 1..604 2423 88.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19226-PA 608 GD19226-PA 1..608 1..604 2454 85.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10324-PA 548 GJ10324-PA 1..548 1..604 807 39.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11597-PA 662 GK11597-PA 252..662 234..604 765 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25533-PA 596 GE25533-PA 1..596 1..604 2169 74.2 Plus

GH08407.hyp Sequence

Translation from 98 to 1912

> GH08407.hyp
MSGAGEHSDEESYGEESFEEDSESEVEVEEEEIEYIEPEESKPSDALLLG
ESDTQSESDVKEEFLSGNPHARRYLGARVVSYLSSSSDDESQVVITKTVA
EVNQLSLRVDTPPEDETPSVRTLMPGSAHSRVKDEDEAEDEDDDEGDGEN
DNDNEDENDDEDAEVEEIEEEEEEIPGDEDDAQSDGSMGRQSADDSDEEE
GTDVEVEQLEEDEPIVTAVCKKTVQKELPPPQKDIVSLVDASDNSSEHSV
VTMCASGDETDNTLVKYPRLRKQQPLTAKDSQSLKEQEEPEEPEQPEENQ
TEEHMPTSQPDLARVRYLEQQMTQMSELIMKSFQINGGAPNSQAFEQLAM
ATEMLQQRSDRRGDTESEMSSMTETTMTSARSLGGGIPPLTMRMERSQEA
LLTTRSSKLPRPKCRCPSESDLIEHEQKLDMGHELPHDLAANFGLGEGYL
VDECGQGDGLMRHPQQRKPMELNRRAVSGTPSTFNSDGCEYQINVSRSRC
SNDKINYKNLGRKSFSFTNPQVREIERQNQILLRKMMTVKPTATIKASTS
SIKINGPEKRQTPPAPRLSSAAVNRKKNQRQIDLDNDLLKRKLEAIGTRR
PQFK*

GH08407.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-PA 604 CG7669-PA 1..604 1..604 3096 100 Plus
l(2)01289-PG 1191 CG9432-PG 740..920 114..311 169 25.7 Plus
l(2)01289-PM 1193 CG9432-PM 740..920 114..311 169 25.7 Plus
Sh3beta-PE 485 CG8582-PE 179..473 4..311 160 20.9 Plus