Clone GH08429 Report

Search the DGRC for GH08429

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:84
Well:29
Vector:pOT2
Associated Gene/TranscriptGrp-RA
Protein status:GH08429.pep: gold
Preliminary Size:2200
Sequenced Size:1513

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4680 2001-01-01 Release 2 assignment
CG4680 2001-07-04 Blastp of sequenced clone
CG4680 2003-01-01 Sim4 clustering to Release 3
CG4680 2008-04-29 Release 5.5 accounting
CG4680 2008-08-15 Release 5.9 accounting
CG4680 2008-12-18 5.12 accounting

Clone Sequence Records

GH08429.complete Sequence

1513 bp (1513 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047572

> GH08429.complete
CCGAAACGTCGCCGCGAACGCAACGATCGGTTAACGGTAAAGATATAGAA
GGCCACCCTCTTTGGAACTAGTAATAGTAGTCCTACGGGAGATTAGTCCA
GAATGGATCCCGAGTTCGTGAACAAATACAATCAGGTCCTTAGCCGTCTG
AAGCTAGTGGAGAACTTCGATGGCAGTGATCCTGGCAAGCTGCCGCAGTT
CCTGCACAAAATCGAGGCCCTTATGCCGGCCATAAATAGTTTCGACGACT
ACTACAAGTTTCAATTGATAGGACATATCAAAAATAAGTGCACAGATCGC
GCCAGGGAGGCGGTCTTCACGCGACAAATGAGCGCTCCCGTGGGCAATGG
CAATGGCAATGGCGGCGGGAATGGTCATCTCCTGAAGGCCGAGTCCTGGC
TAAAACTCAAGGATCAACTGCTGTACAACTATGCGGAGCGGGAGTCTAGC
TACTCGCTGATACACAAGATACGCAGCGCTGTCTTGGACTCGAACATAGA
GTTGTACTACCAGAAGATGGCCAAACTCAAGCACAGACTGATCAATAGAA
AGCTCACGCACAATGACACCCTGTACAGTCTCGAGGACATAGAGCGCATC
ACGCTGCAGGTGTTCCGAGATCATCTGCCCGAGCCGACGCACTCGATGAT
CCTGCGCCGGAATCCCAAGAGCATGGAGGAGGCCTATCGCTACATAGTGG
AGGTGCAGCAGCAGTTCTACACACAGAGCGGATCTCTGGCCAGTGACCAT
CAGGCGGCCACCTTCAGCACCAGCCACAAGCAGCAGTCCTACGGCGTGGG
AATGGGCGGAGTGGGCGTGAGCACCGTTGGCGTGGGCGTCGGAATGGGCA
TGGGCGCTGTGGGGTTGGGACTCTCCTCCTACGTTCGTCAAATGTCCAAC
GACAAGGGACAGCAGAATAGCACGAAGAGCTACTACAATCAGTCGGCTCC
GCCGGTGGGCGCCGGCAAGAATCATCCGATGTTCAAGAGCATTGGCAACC
CCACCTTTAAGTCCAGCTTCAGCTACAATGGCACCAGCAGCAATTCGGGC
ATGGGATCGAATTACTCGAGTACCAAGAAGTCGGACATCAAGCAGAACTA
CCAGCAGCAGAAGAGTCAGAACTACTCGAAGACCTCGTCGGCTAGTGCTT
GGAAGAAGTAGTAGTTGACATGGCTAGACGATCTCACCCTCCAATCGATC
GGCGGTCCAGTGAGATAAGCGTATCGAGCATGACCTAATCCCTTGGAGCC
TGTGACTAAGCCAGGGCAAAGTGATTGCCACCTCATGCTAATTACCCCGA
TACCTCACCCTCTAATGGCGATGAGGTGGCCGAAGATTATAGGATGTGAA
TATAGATTAAATTGTGATGAGAGAGCCATACTGGGTGCAACGAGATGGAG
GTGATCTGATCCCTGTTTCGCGATAATCATAACCAATCCCTATCAGTACA
ACTAAGACGATAATGATGTGAATGTTCAAATAAAACAAATAATACAAAAA
AAAAAAAAAAAAA

GH08429.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4680.a 1687 CG4680.a 111..1608 1..1498 7490 100 Plus
CG4680-RA 1714 CG4680-RA 220..1714 1..1495 7475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16384616..16386110 1..1495 7175 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16394848..16396345 1..1498 7490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16387948..16389445 1..1498 7490 100 Plus
Blast to na_te.dros performed 2019-03-16 06:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 5606..5649 1451..1493 118 77.3 Plus

GH08429.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:11:24 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16384616..16386110 1..1495 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:24 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4680-RA 1..1059 103..1161 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:53 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4680-RA 1..1059 103..1161 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:25 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
Grp-RA 1..1059 103..1161 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:17 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4680-RA 1..1059 103..1161 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:43 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
Grp-RA 1..1059 103..1161 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:04 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4680-RA 220..1714 1..1495 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:52 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4680-RA 220..1714 1..1495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:25 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
Grp-RA 220..1714 1..1495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:18 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4680-RA 220..1714 1..1495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:43 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
Grp-RA 11..1505 1..1495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:24 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16394848..16396342 1..1495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:24 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16394848..16396342 1..1495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:24 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16394848..16396342 1..1495 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:25 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16387948..16389442 1..1495 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:14 Download gff for GH08429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16387948..16389442 1..1495 100   Plus

GH08429.hyp Sequence

Translation from 102 to 1160

> GH08429.hyp
MDPEFVNKYNQVLSRLKLVENFDGSDPGKLPQFLHKIEALMPAINSFDDY
YKFQLIGHIKNKCTDRAREAVFTRQMSAPVGNGNGNGGGNGHLLKAESWL
KLKDQLLYNYAERESSYSLIHKIRSAVLDSNIELYYQKMAKLKHRLINRK
LTHNDTLYSLEDIERITLQVFRDHLPEPTHSMILRRNPKSMEEAYRYIVE
VQQQFYTQSGSLASDHQAATFSTSHKQQSYGVGMGGVGVSTVGVGVGMGM
GAVGLGLSSYVRQMSNDKGQQNSTKSYYNQSAPPVGAGKNHPMFKSIGNP
TFKSSFSYNGTSSNSGMGSNYSSTKKSDIKQNYQQQKSQNYSKTSSASAW
KK*

GH08429.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Grp-PB 352 CG4680-PB 1..352 1..352 1834 100 Plus
Grp-PA 352 CG4680-PA 1..352 1..352 1834 100 Plus

GH08429.pep Sequence

Translation from 102 to 1160

> GH08429.pep
MDPEFVNKYNQVLSRLKLVENFDGSDPGKLPQFLHKIEALMPAINSFDDY
YKFQLIGHIKNKCTDRAREAVFTRQMSAPVGNGNGNGGGNGHLLKAESWL
KLKDQLLYNYAERESSYSLIHKIRSAVLDSNIELYYQKMAKLKHRLINRK
LTHNDTLYSLEDIERITLQVFRDHLPEPTHSMILRRNPKSMEEAYRYIVE
VQQQFYTQSGSLASDHQAATFSTSHKQQSYGVGMGGVGVSTVGVGVGMGM
GAVGLGLSSYVRQMSNDKGQQNSTKSYYNQSAPPVGAGKNHPMFKSIGNP
TFKSSFSYNGTSSNSGMGSNYSSTKKSDIKQNYQQQKSQNYSKTSSASAW
KK*

GH08429.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24276-PA 348 GF24276-PA 1..348 1..352 1487 88.1 Plus
Dana\GF19748-PA 311 GF19748-PA 9..230 9..247 354 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16003-PA 350 GG16003-PA 1..350 1..352 1828 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15891-PA 348 GH15891-PA 1..348 1..352 1236 72.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Gagr-PB 352 CG4680-PB 1..352 1..352 1834 100 Plus
Gagr-PA 352 CG4680-PA 1..352 1..352 1834 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16543-PA 456 GI16543-PA 1..263 1..264 1101 78.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17861-PA 365 GL17861-PA 1..365 1..352 1360 80.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18352-PA 365 GA18352-PA 1..365 1..352 1359 80.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25635-PA 352 GM25635-PA 1..352 1..352 1806 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14639-PA 352 GD14639-PA 1..352 1..352 1811 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12794-PA 373 GJ12794-PA 1..318 1..300 1165 76.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16714-PA 360 GK16714-PA 1..315 1..303 1190 78 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23012-PA 352 GE23012-PA 1..352 1..352 1804 96 Plus