Clone GH08447 Report

Search the DGRC for GH08447

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:84
Well:47
Vector:pOT2
Associated Gene/TranscriptCG6136-RB
Protein status:GH08447.pep: gold
Preliminary Size:4600
Sequenced Size:2159

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6136 2001-12-12 Blastp of sequenced clone
CG6136 2003-01-01 Sim4 clustering to Release 3
CG6136 2008-04-29 Release 5.5 accounting
CG6136 2008-08-15 Release 5.9 accounting
CG6136 2008-12-18 5.12 accounting

Clone Sequence Records

GH08447.complete Sequence

2159 bp (2159 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070500

> GH08447.complete
ACGACGTGGGCTCGCCCATTGTCATTGCTACTAGTGTGCTTGGTCTTCTC
TACTGGTGCCTAGGTATCCTGGCGCATGCTGCAGGAACCCAGTTGCGATT
CCCGTTCCGTGCGATGTCCGTCGCTTCGCTCGCACGACGCTCGCAAATCA
AATTAAAAAATTAACAAAAATTGTTCACAACAGCACAGGCACAGTGTTGT
TTTTCAATACTGGAAACTAACTGGTTTTTATCGATGAACGTGTCGTGCTT
GGTTAGATATCGATTGCTTCTGTAGAAGCTGATGGTAGAATCAGCTGATT
TACATAAACCTATCGGAACTCTGCAATAAATTGGTTTATTTTTGTTTACC
TGTCCTTTTATCAATGATAAGAGAAATGTCCAACCACGATATCAAGCTGG
AGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGCGGA
GCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGACACC
CAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCATTT
ACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGACGAG
GAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGGTGC
CGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACGTGG
ATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACCTTT
CACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGTCGA
CATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCCGAC
CCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAACAT
CAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAACCT
GGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCGCCC
TGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATGGAG
TGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAACCAA
CTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCTCCC
GCTGAAAATCATAGTACTTAACCTATCCCTAAGACTTAAATTATTCCTTA
ACTGTTTGTTTACATCATATATAACTAGTATATACCTTTTACTTAAGTAG
TCTTATCCCTAAAATTCTAAATTCTAAAAAATAATCCAAATTTGATTTGA
TTTGATTGTGCTGAAACAACATGATTGTGGAGATAGTAGAGAATCCTGCT
GCTCTAGAACATAATTCTTTTAATGATCACTTAAATAATGCAGAAAGGGT
ATTGCATAGAATAGAAGCATACAATGTAAAGCTAAATAATCATATGAGGA
GATTGAAAGAACTGCTGGCCAACAATAGAAGATTGATTTCGGGGCTATCG
TACAATGAGCACAGCATTAAATCTTTATTGGAAAACAAAGCTCAAGATAA
ACAAATAGAGTAAGCTAAAGAAGGAAATATGAACTCGGTTATAAACTAAT
ATATTTTTAGGCGAAATTCAAGTAAAAGAAGGTGTCATCTTCGTAGGACT
TGCAAGGCGACCAACATCAGAGAGGCATGTTGGACGCAATGCAAGTCTCA
CATGGAGCCTGAAGAGGAAGAGCAAACCCAAGACGTGGTGGAGATCCAAA
CGAAAACACAAACATCTAGAAGCCGTTCCGGAAAAGTATGTGAACGGCAG
AAAGGTGGTAGGGAGCTGAGTTCATATTACGAGCTAAGTGAGGAGATTGG
TTTCAAAGGTAGGTTTTTATCAATTTCTGAGATCTCTTTCTTGAAATCCA
AGTATATCCCAAGTGAAATGCATGCTAAAGCTTGTCGAAAAGATGGATTT
CAAAACGGCCACAATTGCCGAAGTGAAAACCATTCGCAGAAGGGTGTTAA
GTGCAATATCAAGTCGCCAAAAAAACCTGCAGTGAGCCAGAAGGAGTTTG
GTCGCATCTGATATGTATGTCGAAAAATCCGTATTCCTACAAATAGGCAA
ATTGAATGAAATAAATTGAAAACTCTTTTCAAAATAATGACAAAAAAAAA
AAAAAAAAA

GH08447.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RA 2142 CG6136-RA 1..2142 1..2142 10710 100 Plus
CG6136.a 2036 CG6136.a 1..1560 1..1560 7800 100 Plus
CG6136.a 2036 CG6136.a 1560..1807 1611..1858 1240 100 Plus
CG5073-RA 1622 CG5073-RA 1..242 242..1 1210 100 Minus
CG6136.a 2036 CG6136.a 1805..2036 1911..2142 1160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11194671..11196811 2141..1 10495 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15370035..15372176 2142..1 10710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15110866..15113007 2142..1 10710 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:19:54 has no hits.

GH08447.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:21:06 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11194671..11196811 1..2141 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:28 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 1..792 364..1155 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:39 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RC 1..792 364..1155 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:24:04 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 1..792 364..1155 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:46 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 1..792 364..1155 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:02:15 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 1..792 364..1155 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:44 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 1..2141 1..2141 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:38 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RC 1..2141 1..2141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:04 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RC 37..2177 1..2141 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:46 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 1..2141 1..2141 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:02:15 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RC 37..2177 1..2141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:06 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15370036..15372176 1..2141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:06 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15370036..15372176 1..2141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:06 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15370036..15372176 1..2141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:04 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11195758..11197898 1..2141 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:04 Download gff for GH08447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15110867..15113007 1..2141 100   Minus

GH08447.pep Sequence

Translation from 363 to 1154

> GH08447.pep
MIREMSNHDIKLEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGT
LKTIKETLTMPIYCMLRPRRGTDFVYSDEEMCALLTDMDLLRENGADGFV
FGSLNPDRSINVDQCRHVLLASGGLPVTFHRAFDLTDQKSMDENVDMLRE
LGFRRLLSSGFRPTAADGVDCLAQLIAKHQRDFIVMPGAGIKVSNLEEIL
TVSRCLEFHASALDTAGEDYVAPTTTRMECDVTMGKQDVDPYYGTNSIVV
RKMVTIAKAMSSR*

GH08447.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16703-PA 258 GF16703-PA 1..257 5..261 1143 81.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20563-PA 259 GG20563-PA 1..259 5..263 1329 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18404-PA 260 GH18404-PA 1..260 5..263 1040 78.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PD 263 CG6136-PD 1..263 1..263 1351 100 Plus
CG6136-PC 263 CG6136-PC 1..263 1..263 1351 100 Plus
CG6136-PB 263 CG6136-PB 1..263 1..263 1351 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23394-PA 260 GI23394-PA 1..260 5..263 1051 78.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23061-PA 259 GL23061-PA 1..259 5..263 1157 81.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24049-PA 259 GA24049-PA 1..259 5..263 1155 81.1 Plus
Dpse\GA27128-PA 259 GA27128-PA 1..259 5..263 1151 81.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25773-PA 259 GM25773-PA 1..259 5..263 1356 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20351-PA 259 GD20351-PA 1..259 5..263 1356 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10389-PA 260 GJ10389-PA 1..260 5..263 1033 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11437-PA 260 GK11437-PA 1..260 5..263 1109 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26378-PA 259 GE26378-PA 1..258 5..262 1326 96.9 Plus

GH08447.hyp Sequence

Translation from 363 to 1154

> GH08447.hyp
MIREMSNHDIKLEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGT
LKTIKETLTMPIYCMLRPRRGTDFVYSDEEMCALLTDMDLLRENGADGFV
FGSLNPDRSINVDQCRHVLLASGGLPVTFHRAFDLTDQKSMDENVDMLRE
LGFRRLLSSGFRPTAADGVDCLAQLIAKHQRDFIVMPGAGIKVSNLEEIL
TVSRCLEFHASALDTAGEDYVAPTTTRMECDVTMGKQDVDPYYGTNSIVV
RKMVTIAKAMSSR*

GH08447.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PD 263 CG6136-PD 1..263 1..263 1351 100 Plus
CG6136-PC 263 CG6136-PC 1..263 1..263 1351 100 Plus
CG6136-PB 263 CG6136-PB 1..263 1..263 1351 100 Plus