Clone GH08448 Report

Search the DGRC for GH08448

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:84
Well:48
Vector:pOT2
Associated Gene/TranscriptCG11656-RA
Protein status:GH08448.pep: gold
Preliminary Size:1163
Sequenced Size:1105

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11656 2001-01-01 Release 2 assignment
CG11656 2002-03-19 Blastp of sequenced clone
CG11656 2003-01-01 Sim4 clustering to Release 3
CG11656 2008-04-29 Release 5.5 accounting
CG11656 2008-08-15 Release 5.9 accounting
CG11656 2008-12-18 5.12 accounting

Clone Sequence Records

GH08448.complete Sequence

1105 bp (1105 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094687

> GH08448.complete
ACTTTCACTAAATCGAGACTTATCACAGCAGCGATATAAAGTTATTAAAT
ATTGATTTAAATTTTAGTTGAACATTCCGCGATGGAAACTGATAAGGAAA
AACAAAGCGATGAGCTCATGAATCGCATTCGGAACGAGCTTACAGCTATA
TTATCTCAAGAGGCTGCTGATGATTCCGACAAGGAGGCGTCACAGGAACT
GCTCCTGAGTCCCAATCCGCTGCCCATTTTCGGGCCCATAAGGAAAACAA
GGAAAGCAAAATCGAGGAGTTCCAAGAAGAACAATAGTAAGGCCTCCTCC
TCGTCCGCTGGCAGTACAAAGAGTTCGTCGTCGGGTACCAGATCATCTGA
AGATCGTTTAACTGGAGGTGGAGCCCAGGAGAAGCCATCGGATCCGGTCT
CCACATCCTCGAGCTATTCGCTAAGATCAGGATATGACGCTCCGCCCGTG
GAGGCCAGTGCCCGTGCCGACTTCCTTGAATCGCAAGCGGCCAAAAGCAT
CGACGAAGATGTCCGGAAGATGCAGCTGGAGCTCAAGCAGAGCTACGAAC
TCTTCCAGGGCATTGGCGAGAAATTGGAGTCGGTTAGCTTCACGGGCTTG
AAGGACCGCATACGGGACCTGCACCTAAACGAATCCAACAACGAGTTGGG
CAAAGCGACGACTGCAGAGCTTCAGATGATGTTCGACCAGCGTTTCCTGC
AAAATCGCCTGGACAAGCTATCCACGGACGCCACGCAGGGATTCCGTCGG
CATCCCGGCGAATTCGGCGACATACCCGAGCTGAGCACCTTCTTCCAGGC
ATGCACTCAGTTGGAACGCGGACTGGATGCACTGCGTCAGCAGCGGCGGC
GCAACAGCGAGCTGGAGAAGCGTCTGTGCTGGGCCACCGAAATCGCATAC
GATCGCATGGACGAGATTCGCAATGCGGTTGGCTCGGATCCGGAAAAGAA
CTTCTGAATTGGTGACCTGTAGTTACATTTTTGGTTCACCCTAAGGTTCA
TTACCCGCACACAAACACACACACAGGCAAACACGCACAGGTGCAATACA
TATGCGTTTATCCCACACCCATAGGCGATGCAATAAAAAAAAAAAAAAAA
AAAAA

GH08448.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11656-RA 1139 CG11656-RA 56..1139 1..1084 5420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8835416..8836338 162..1084 4615 100 Plus
chr3R 27901430 chr3R 8835176..8835337 1..162 810 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13010164..13011088 162..1086 4625 100 Plus
3R 32079331 3R 13009924..13010085 1..162 810 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12750995..12751919 162..1086 4625 100 Plus
3R 31820162 3R 12750755..12750916 1..162 810 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:48:40 has no hits.

GH08448.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:49:41 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8835176..8835336 1..161 100 -> Plus
chr3R 8835416..8836338 162..1084 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:29 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 1..876 82..957 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:19 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 1..876 82..957 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:13:42 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 1..876 82..957 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:37 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 1..876 82..957 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:32 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 1..876 82..957 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:22 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 30..1113 1..1084 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:18 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 30..1113 1..1084 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:13:42 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 30..1113 1..1084 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:37 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 30..1113 1..1084 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:32 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
CG11656-RA 30..1113 1..1084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:41 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13009924..13010084 1..161 100 -> Plus
3R 13010164..13011086 162..1084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:41 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13009924..13010084 1..161 100 -> Plus
3R 13010164..13011086 162..1084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:41 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13009924..13010084 1..161 100 -> Plus
3R 13010164..13011086 162..1084 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:13:42 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8835646..8835806 1..161 100 -> Plus
arm_3R 8835886..8836808 162..1084 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:21 Download gff for GH08448.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12750995..12751917 162..1084 100   Plus
3R 12750755..12750915 1..161 100 -> Plus

GH08448.pep Sequence

Translation from 81 to 956

> GH08448.pep
METDKEKQSDELMNRIRNELTAILSQEAADDSDKEASQELLLSPNPLPIF
GPIRKTRKAKSRSSKKNNSKASSSSAGSTKSSSSGTRSSEDRLTGGGAQE
KPSDPVSTSSSYSLRSGYDAPPVEASARADFLESQAAKSIDEDVRKMQLE
LKQSYELFQGIGEKLESVSFTGLKDRIRDLHLNESNNELGKATTAELQMM
FDQRFLQNRLDKLSTDATQGFRRHPGEFGDIPELSTFFQACTQLERGLDA
LRQQRRRNSELEKRLCWATEIAYDRMDEIRNAVGSDPEKNF*

GH08448.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16927-PA 317 GF16927-PA 1..317 1..291 991 65.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19346-PA 286 GG19346-PA 1..286 1..291 1189 85.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18367-PA 277 GH18367-PA 2..277 4..291 724 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11656-PA 291 CG11656-PA 1..291 1..291 1462 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23356-PA 296 GI23356-PA 1..296 1..291 775 54.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24380-PA 287 GL24380-PA 1..287 1..291 887 59.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11123-PA 287 GA11123-PA 1..287 1..291 896 60.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24075-PA 285 GM24075-PA 1..285 1..291 1287 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18872-PA 291 GD18872-PA 1..291 1..291 1283 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10349-PA 289 GJ10349-PA 2..289 4..291 746 54.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12222-PA 282 GK12222-PA 2..282 4..291 868 59.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26233-PA 286 GE26233-PA 1..286 1..291 1217 85.2 Plus

GH08448.hyp Sequence

Translation from 81 to 956

> GH08448.hyp
METDKEKQSDELMNRIRNELTAILSQEAADDSDKEASQELLLSPNPLPIF
GPIRKTRKAKSRSSKKNNSKASSSSAGSTKSSSSGTRSSEDRLTGGGAQE
KPSDPVSTSSSYSLRSGYDAPPVEASARADFLESQAAKSIDEDVRKMQLE
LKQSYELFQGIGEKLESVSFTGLKDRIRDLHLNESNNELGKATTAELQMM
FDQRFLQNRLDKLSTDATQGFRRHPGEFGDIPELSTFFQACTQLERGLDA
LRQQRRRNSELEKRLCWATEIAYDRMDEIRNAVGSDPEKNF*

GH08448.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11656-PA 291 CG11656-PA 1..291 1..291 1462 100 Plus