Clone GH08526 Report

Search the DGRC for GH08526

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:85
Well:26
Vector:pOT2
Associated Gene/TranscriptSsl1-RA
Protein status:GH08526.pep: gold
Preliminary Size:1419
Sequenced Size:1587

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11115 2001-01-01 Release 2 assignment
CG11115 2001-07-04 Blastp of sequenced clone
CG11115 2003-01-01 Sim4 clustering to Release 3
Ssl1 2008-04-29 Release 5.5 accounting
Ssl1 2008-08-15 Release 5.9 accounting
Ssl1 2008-12-18 5.12 accounting

Clone Sequence Records

GH08526.complete Sequence

1587 bp (1587 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047574

> GH08526.complete
AGCCGGCGCATTTTATTTAGCGTTAATTGCTTTTCTTTCTTGATTTGACT
TGGTAGTGCATCAGGACTGCAAGTATGGCCGACGATGAGCAAGAGGACCA
GAAGGAGTACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCA
AGGACGACGAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAG
AAGGCCAAACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGG
CATGATGCGCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCG
TGCCTGATTTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAG
CTGTTTATCGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACT
CATAGCGCTAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCA
CTTCGCGCGTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTG
ACCAGCGAGCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCT
TAAGGTGGTGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCT
CGCTCACCACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTA
AAAAAGGAGGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCA
CGTGGCCCGCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTT
TGGATGATGCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCG
CCCGCCGCTAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCA
CACAAAGAATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGT
GCCACATAGAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCAC
CACTGCCCGCAATGCAACAGCAAGTACTGCGAGCTGCCCGTGGAGTGCCA
GTCTTGCGGCCTCACCCTGGTCTCCGCGCCGCACTTGGCGCGTTCCTACC
ACCACCTTTTCCCGGTGCCAAATTTTGAGGAACTGCCGTTTGAGGCGATG
CCTGCTTCGTCATCCGACCTCACCAGCGATGTCAGGGAATGTTACGGCTG
CGCCAAAGCTCTTGGGCAAGGCGTTGACAAGGTCGCCGATAAAGTCGTCT
TCAGATGCGGTTTCTGCAAGCAGTTCTTCTGCGTTGACTGCGACATCTTC
ATTCACGACACATTGCACGCCTGCGTGGGATGCAACACCATTCCCGGCGT
AGACGGTCTGGTTTACCAGCAAAGTTCCAAGTCTGACCAGGTTGATGCAC
ACCCAGGGCCCTCAAAGCAGCGCGGCCAGTGTGGGATGTAACTGACTTTC
TATAGATAGATATTTCGAACTTCCACATAACTACGCATTTGGGGCAAACA
AAATACAGTTCGTTTCGAAACGGTGGTTATGAGTTGTATCAATTAAAATC
TGGTTTTATGCTTAATAATTGTGAAGGCGAGCGTAGCATTATTATGGCCG
TTGTGTGAGACCCTCTCAAAAAAAAAAAAAAAAAAAA

GH08526.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RA 1717 Ssl1-RA 147..1715 1..1569 7845 100 Plus
Ssl1.a 1584 Ssl1.a 67..1582 54..1569 7580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22868792..22869879 480..1567 5440 100 Plus
chr3L 24539361 chr3L 22868399..22868741 139..481 1715 100 Plus
chr3L 24539361 chr3L 22868208..22868347 1..140 700 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879876..22880965 480..1569 5450 100 Plus
3L 28110227 3L 22879483..22879825 139..481 1715 100 Plus
3L 28110227 3L 22879292..22879431 1..140 700 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22872976..22874065 480..1569 5450 100 Plus
3L 28103327 3L 22872583..22872925 139..481 1715 100 Plus
3L 28103327 3L 22872392..22872531 1..140 700 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:11:19 has no hits.

GH08526.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:12:20 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22868208..22868346 1..139 100 -> Plus
chr3L 22868400..22868741 140..481 100 -> Plus
chr3L 22868794..22869879 482..1567 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:40 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 75..1391 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:55 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 75..1391 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:04 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 75..1391 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:20 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 75..1391 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:21:34 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 75..1391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:08 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 147..1713 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:55 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 147..1713 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:04 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 147..1713 1..1567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:20 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 147..1713 1..1567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:21:34 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 147..1713 1..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:20 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22879292..22879430 1..139 100 -> Plus
3L 22879484..22879825 140..481 100 -> Plus
3L 22879878..22880963 482..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:20 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22879292..22879430 1..139 100 -> Plus
3L 22879484..22879825 140..481 100 -> Plus
3L 22879878..22880963 482..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:20 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22879292..22879430 1..139 100 -> Plus
3L 22879484..22879825 140..481 100 -> Plus
3L 22879878..22880963 482..1567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:04 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22872392..22872530 1..139 100 -> Plus
arm_3L 22872584..22872925 140..481 100 -> Plus
arm_3L 22872978..22874063 482..1567 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:17 Download gff for GH08526.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22872584..22872925 140..481 100 -> Plus
3L 22872978..22874063 482..1567 100   Plus
3L 22872392..22872530 1..139 100 -> Plus

GH08526.hyp Sequence

Translation from 74 to 1390

> GH08526.hyp
MADDEQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQA
QKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFD
QNPISQLGLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQN
GLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRCS
VISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN
SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK
YCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLT
SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHAC
VGCNTIPGVDGLVYQQSSKSDQVDAHPGPSKQRGQCGM*

GH08526.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-PB 438 CG11115-PB 1..438 1..438 2315 100 Plus
Ssl1-PA 438 CG11115-PA 1..438 1..438 2315 100 Plus

GH08526.pep Sequence

Translation from 74 to 1390

> GH08526.pep
MADDEQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQA
QKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFD
QNPISQLGLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQN
GLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRCS
VISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN
SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK
YCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLT
SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHAC
VGCNTIPGVDGLVYQQSSKSDQVDAHPGPSKQRGQCGM*

GH08526.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11005-PA 422 GF11005-PA 1..420 1..424 2029 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16285-PA 438 GG16285-PA 1..438 1..438 2298 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16776-PA 443 GH16776-PA 1..443 1..438 1959 81.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-PB 438 CG11115-PB 1..438 1..438 2315 100 Plus
Ssl1-PA 438 CG11115-PA 1..438 1..438 2315 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13436-PA 461 GI13436-PA 1..411 1..416 1940 85.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24973-PA 445 GL24973-PA 1..442 1..435 2061 86.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10767-PA 445 GA10767-PA 1..442 1..435 2057 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22477-PA 438 GM22477-PA 1..438 1..438 2334 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15058-PA 438 GD15058-PA 1..438 1..438 2338 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11798-PA 442 GJ11798-PA 1..442 1..438 1958 81.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12882-PA 454 GK12882-PA 2..418 5..426 1830 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22646-PA 438 GE22646-PA 1..438 1..438 2293 96.8 Plus