Clone GH08630 Report

Search the DGRC for GH08630

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:86
Well:30
Vector:pOT2
Associated Gene/TranscriptCG10830-RA
Protein status:GH08630.pep: gold
Preliminary Size:2425
Sequenced Size:2629

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10830 2001-01-01 Release 2 assignment
CG10830 2001-09-19 Blastp of sequenced clone
CG10830 2003-01-01 Sim4 clustering to Release 3
CG10830 2008-04-29 Release 5.5 accounting

Clone Sequence Records

GH08630.complete Sequence

2629 bp (2629 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060259

> GH08630.complete
TGCGGACGCGTTTGGCGGACAGAAAACGAAAGGAAAGCAACAGCAGCCAG
TACCACACAAGCTGTAAACAAACCCATATAGGGGCCCACGTTCGCGAGTG
TCCATATGTGTGATTAGTTTCGTTGGATATAACTAATTCGATCCTTAAAC
GGCATACATCATGCCCGAAATCATCGAGCTGAACGTCGGCGGCGTGAGCT
ACACGACCACACTGGCCACACTGCTGCAGGATAAGAGCACGCTGCTGGCG
GAACTCTTTGGCGAGGGTCGCGATTCGCTGGCCAAGGACAGCAAGGGTCG
CTACTTCCTGGACCGTGACGGCGTCCTCTTCCGCTACATCCTGGACTTCC
TGCGCGACAAGGCGCTGCACCTTCCCGAAGGATTCCGCGAGCGACAGCGG
CTGCTGCGGGAGGCGGAGCACTTTAAGCTGACCGCCATGCTCGAGTGCAT
CCGCAGCGAGCGGGACGCTCGACCACCCGGATGCATCACCATCGGTTACC
GTGGCAGCTTCCAGTTCGGCAAAGACGGACTGGCCGACGTTAAGTTCCGG
AAGCTGTCGCGCATCCTGGTCTGCGGCCGAGTGGCCCAGTGCCGCGAGGT
GTTCGGCGATACGCTGAACGAGTCCCGGGATCCGGATCATGGTGGCACGG
ATCGGTACACCTCGCGGTTCTTCCTGAAGCACTGCTACATCGAGCAGGCT
TTCGACAATCTGCACGACCACGGATACCGCATGGCCGGAAGCTGCGGATC
CGGAACTGCCGGCTCGGCAGCGGAACCCAAGCCGGGCGTGGACACAGAGG
AAAATCGCTGGAACCACTACAATGAGTTCGTCTTCATCCGGGACTAGGAA
GCTAATGGAACCACTACAGAACACCCCACCCAATCCAGTTCTGTAACGTT
ATTTATTCTTTGTGCGTGATTTGTTTTGAAATTAGCCTTCGGATAGCCAG
ACCCATCATAAGAACAAGGATCAGAAGGAGGGCGCACAGATTTCAATGGC
TTTAGTTTGAACCCACCTCTTGATATACAAATGGGAACATTTCGAATGTA
CAATTGAACTAACAATCCACACTTAAGTCTAGAAAATTATTGACACACAT
AGATAACTAAATGCTAGACGTGTTTCCATGTATTGCCTTGATTATTTCTA
CTTTGCTTACGCGTTCATCTTAAATCAGGGTGGGCCCCATTAAATTCTGC
TCCAGACTCTTTGATGAATGAAAAGCGATTCGAATTTACTGGCTGACAAC
AAGTGAAAACAATTCGGCAAGTGGAGATAACAAAGCAAAGCGAACATTTT
ATTAGCCCCAACTTTTGTTGATCCAGTGCAGTATAAACAAGATGAGAAGA
AAACATTAAACAGATCCGCATCAATGAAACAAACTGAAACGGAATGGAAC
TTACCACATGGATAACGTTGTAATTGTGATCAATCAATCACACTAAAATC
ACATACTGAACAATTTGAAATACGGGTTACTTTTTGAAACAAACTAACGA
AGTATTGTAGCAACAGATACCACAAGCAACCAAGCTCAAACCCAAGCAAA
TGGTAAATATAAAGTTTTATTAGTCTAATAAAAGTCGAACTTTGAACTAA
AGAATATACAAATAGCAAAATAGGACAACGGCGAACAACATGTGGCCCCT
AAAAAAAAACGTTGATTGAAGCCCCTTACAATAGCACTTTCATCCACCGG
ATTACCCATCATTTTTCCAAGCCAAATAAGAAGAGTTATTCGATTATAAA
TTATTAGTGAACTGCAATGAGAAATGCCAAATACAAAATACCAAATGGTC
ACAAGGACTTCCAGAAGTACGATGGGAATACGACACATACGAAACTAAAT
TTGCTGAACTTTAGAAAGGCTCTGTTATTATTATTATTATTGATTTTATC
AACATTGTGTTTTGGGAGCGAATCCATGAAAATGTTTTTTCGCTGACATA
TCTCGCATCGCAGTTTCGACATTTCCGCAGGCTTGTTGTTGAATTCGCGT
CATGAAATTTCACTTGAAATTTATGGATCGAAGCGCTTGGGCGGAAATCT
GAATGGAAATGCCGATGCGCAACATTGAAATAAAACACTCATGAAATTTA
CGAACAAATTGTAAAAAACAATAAATTCTATAAATCGTGTGTAAAGAGGC
TAGCAGCATACAAACATACATACATATGTAATCATCAGCAATAGTGTGCA
TTGAAAACTATTAGGCCCCTTTACGAGTATATACTGACCCTGACTCGATG
TGAGTTGACGGCTCTTACACAGATAATATAAATCGATATATATACAAATA
TCTATATATACCTAATTATATATTAAAAAAAATTGTCGATATTGAAAGTA
TCTTATAAATGTTTAGTATTATATGTAATTGAATCCAGATTGAGCGGCAA
TGGCAAGGCGACCGATATGTATTGTATTAATTAAATTAAACTGAAACTAA
TTCAAATTAACTAAAACGAAATGTAAAATGTACTTAGAGAAGCGCGAAGT
AAAACTGCTAAAATAGCCAATCAATGTGCGACTAAGCAAGCATATGTATG
TAAAGAGGTATAACTTGCGAAAAGCGAAAAGCAAACAATAAATTAATGAA
ATCATAAACAAAAAAAAAAAAAAAAAAAA

GH08630.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-RA 2869 CG10830-RA 25..1699 1..1675 8375 100 Plus
CG10830.a 2975 CG10830.a 103..1661 1..1559 7765 99.8 Plus
CG10830.a 2975 CG10830.a 1945..2888 1670..2613 4720 100 Plus
CG10830-RA 2869 CG10830-RA 1930..2869 1670..2609 4700 100 Plus
CG10830.a 2975 CG10830.a 1654..1714 1615..1675 305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16719501..16721175 1675..1 8375 100 Minus
chr3R 27901430 chr3R 16718331..16719270 2609..1670 4700 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20895622..20897296 1675..1 8375 100 Minus
3R 32079331 3R 20894448..20895391 2613..1670 4720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20636453..20638127 1675..1 8375 100 Minus
3R 31820162 3R 20635279..20636222 2613..1670 4720 100 Minus
Blast to na_te.dros performed 2019-03-16 16:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 7693..7794 2425..2525 138 60.8 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 873..1171 1333..1622 137 54.2 Plus
Circe 7450 Circe CIRC 7450bp 6842..6994 1017..1168 132 59.5 Plus
TAHRE 10463 TAHRE OSV 10463bp 9366..9415 2560..2608 121 74 Plus
roo 9092 roo DM_ROO 9092bp 8245..8470 2313..2524 115 54.4 Plus

GH08630.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:12:39 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16718331..16719268 1671..2609 94 <- Minus
chr3R 16719506..16721175 1..1670 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:51 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1..687 161..847 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:58 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1..687 161..847 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:51 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1..687 161..847 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:51 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1..687 161..847 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:22:12 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1..687 161..847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:42 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 25..871 1..847 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:58 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1932..2869 1671..2609 99   Plus
CG10830-RA 25..1694 1..1670 100 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:51 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 25..1694 1..1670 100 -> Plus
CG10830-RA 1932..2869 1671..2609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:51 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 25..871 1..847 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:22:12 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 25..1694 1..1670 100 -> Plus
CG10830-RA 1932..2869 1671..2609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:39 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20894452..20895389 1671..2609 99 <- Minus
3R 20895627..20897296 1..1670 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:39 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20894452..20895389 1671..2609 99 <- Minus
3R 20895627..20897296 1..1670 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:39 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20894452..20895389 1671..2609 99 <- Minus
3R 20895627..20897296 1..1670 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:51 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16720174..16721111 1671..2609 99 <- Minus
arm_3R 16721349..16723018 1..1670 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:19 Download gff for GH08630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20635283..20636220 1671..2609 99 <- Minus
3R 20636458..20638127 1..1670 100   Minus

GH08630.hyp Sequence

Translation from 160 to 846

> GH08630.hyp
MPEIIELNVGGVSYTTTLATLLQDKSTLLAELFGEGRDSLAKDSKGRYFL
DRDGVLFRYILDFLRDKALHLPEGFRERQRLLREAEHFKLTAMLECIRSE
RDARPPGCITIGYRGSFQFGKDGLADVKFRKLSRILVCGRVAQCREVFGD
TLNESRDPDHGGTDRYTSRFFLKHCYIEQAFDNLHDHGYRMAGSCGSGTA
GSAAEPKPGVDTEENRWNHYNEFVFIRD*

GH08630.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-PA 228 CG10830-PA 1..228 1..228 1214 100 Plus
CG10440-PA 338 CG10440-PA 108..207 5..104 172 38.6 Plus
CG10440-PB 367 CG10440-PB 137..236 5..104 172 38.6 Plus
CG10465-PA 301 CG10465-PA 19..115 3..99 159 38.8 Plus

GH08630.pep Sequence

Translation from 160 to 846

> GH08630.pep
MPEIIELNVGGVSYTTTLATLLQDKSTLLAELFGEGRDSLAKDSKGRYFL
DRDGVLFRYILDFLRDKALHLPEGFRERQRLLREAEHFKLTAMLECIRSE
RDARPPGCITIGYRGSFQFGKDGLADVKFRKLSRILVCGRVAQCREVFGD
TLNESRDPDHGGTDRYTSRFFLKHCYIEQAFDNLHDHGYRMAGSCGSGTA
GSAAEPKPGVDTEENRWNHYNEFVFIRD*

GH08630.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17008-PA 227 GF17008-PA 1..227 1..228 1137 94.3 Plus
Dana\GF12090-PA 343 GF12090-PA 113..212 5..104 175 38.6 Plus
Dana\GF21506-PA 297 GF21506-PA 15..121 3..109 161 38 Plus
Dana\GF20912-PA 266 GF20912-PA 78..182 3..105 146 38 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15048-PA 228 GG15048-PA 1..228 1..228 1191 98.2 Plus
Dere\GG20766-PA 338 GG20766-PA 108..207 5..104 175 38.6 Plus
Dere\GG10865-PA 301 GG10865-PA 19..125 3..109 166 38 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22288-PA 230 GH22288-PA 1..230 1..228 1078 92.6 Plus
Dgri\GH20052-PA 350 GH20052-PA 116..336 5..201 174 27.2 Plus
Dgri\GH23729-PA 297 GH23729-PA 15..121 3..109 167 38 Plus
Dgri\GH20158-PA 297 GH20158-PA 15..121 3..109 167 38 Plus
Dgri\GH17955-PA 210 GH17955-PA 22..126 3..105 144 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ktl-PB 228 CG10830-PB 1..228 1..228 1214 100 Plus
Ktl-PA 228 CG10830-PA 1..228 1..228 1214 100 Plus
twz-PA 338 CG10440-PA 108..207 5..104 172 38.6 Plus
twz-PB 367 CG10440-PB 137..236 5..104 172 38.6 Plus
CG10465-PA 301 CG10465-PA 19..115 3..99 159 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21987-PA 230 GI21987-PA 1..230 1..228 1127 93 Plus
Dmoj\GI20461-PA 350 GI20461-PA 116..336 5..201 176 27.5 Plus
Dmoj\GI20668-PA 297 GI20668-PA 15..121 3..109 166 38 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23251-PA 228 GL23251-PA 1..228 1..228 1150 94.3 Plus
Dper\GL17486-PA 342 GL17486-PA 112..211 5..104 174 38.6 Plus
Dper\GL11047-PA 297 GL11047-PA 15..111 3..99 164 39.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10583-PA 228 GA10583-PA 1..228 1..228 1150 94.3 Plus
Dpse\GA10319-PA 342 GA10319-PA 112..211 5..104 174 38.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23149-PA 228 GM23149-PA 1..228 1..228 1189 98.2 Plus
Dsec\GM15711-PA 338 GM15711-PA 108..207 5..104 175 38.6 Plus
Dsec\GM11095-PA 301 GM11095-PA 19..125 3..109 166 38 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20024-PA 228 GD20024-PA 1..228 1..228 1189 98.2 Plus
Dsim\GD25187-PA 338 GD25187-PA 108..207 5..104 175 38.6 Plus
Dsim\GD10363-PA 301 GD10363-PA 19..125 3..109 166 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14346-PA 230 GJ14346-PA 1..230 1..228 1125 92.6 Plus
Dvir\GJ22311-PA 352 GJ22311-PA 118..338 5..201 174 27.2 Plus
Dvir\GJ20417-PA 297 GJ20417-PA 15..121 3..109 167 38 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22689-PA 230 GK22689-PA 1..230 1..228 1134 93.5 Plus
Dwil\GK22258-PA 338 GK22258-PA 106..205 5..104 173 38.6 Plus
Dwil\GK21368-PA 388 GK21368-PA 108..198 5..96 166 41.3 Plus
Dwil\GK14663-PA 210 GK14663-PA 22..126 3..105 144 38 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25029-PA 228 GE25029-PA 1..228 1..228 1200 99.1 Plus
Dyak\GE13699-PA 338 GE13699-PA 108..207 5..104 175 38.6 Plus
Dyak\GE11245-PA 301 GE11245-PA 19..125 3..109 169 38.9 Plus