Clone GH08636 Report

Search the DGRC for GH08636

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:86
Well:36
Vector:pOT2
Associated Gene/Transcriptphtf-RA
Protein status:GH08636.pep: gold
Preliminary Size:3408
Sequenced Size:3069

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3268 2000-02-14 Blastp of sequenced clone
CG3268 2001-01-01 Release 2 assignment
CG3268 2003-01-01 Sim4 clustering to Release 3
phtf 2008-04-29 Release 5.5 accounting
phtf 2008-08-15 Release 5.9 accounting
phtf 2008-12-18 5.12 accounting

Clone Sequence Records

GH08636.complete Sequence

3069 bp (3069 high quality bases) assembled on 2000-02-14

GenBank Submission: AF181638

> GH08636.complete
ATTTGTGAGCACACACTTTAGTTTTTCGTTAGGAACGGGACGTTCGTTCT
GTTGCGCACCAAATTTTTTCGGACCCAATGCAAATGCAAACGCTTTTGCG
GCGTGTGTAGTGCATTCAAAATTACCAGATACCCAACGGGATCCAAAGTT
CCCAGAGCAGTGGCACCGGAATCGATGCGACCAGCAGTCAGCGGAAGCGT
AAGAAATTCGCGCCTAGGTGGACAAAAATCGATCTGTGACGCGGTTTAAA
CCAAGGCTGCACGACACTTCGAGGACTTTTATGTGATTATTACTATGAAA
TTGGATGAAATAGTTGCATGGTACCAGAAGAGAATCGGCACCTATGACAA
GCAAGAATGGGAAAAGACCGTCGAACAGAGGATATTGGACGGCTTCAATA
GTGTCAATTTAAAAAACACCAAGCTGAAGACGGAGCTAATCGATGTGGAC
TTGGTGCGAGGTTCCACGTTCCCTAAGGCCAAGCCCAAGCAGTCGTTACT
CACTGTGATACGCCTGGCCATTCTGCGCTATGTCCTGCTGCCCCTCTATG
CCCAGTGGTGGGTCAAGCAGACCACGCCAAACGCCTTCGGCTTCATCCTT
GTGCTTTACCTCACACAGTTAACCAACTGGGCTATCTACGTGCTTCACAG
CAGTCGCATAGTGCCCCTTGACTATGAGAAGCCGCCAAATGGAACCCTGC
TTCAGGCAGAGGCAGATGGAGATGCCTCCGATAAGGATGCAGATAAGGAG
TCCGAGGAACATGCCGCCCTCCTCAGTGCCCTGCTTATTCCGTGCGCCCT
AAGCTTGCTGATCAGTCTCATCCACTCACAAATTGTAGCCACTAACACCG
CCTCGGGTGTCTCTGGCGGGAGTAGCAAGAACAAGCTGCGTCGCATATCT
GCAAGCTACTTAAGCGACAAAGCAGCAACCAGGGAGAACCGGGTGCGACG
TCGCAAGAAGATTGTGCGAGTTCGACAAGTGGAGGCTGACTTGTCCCAGG
CCAGCAGTAACATATCACTTCCAAACAGAAGAACCGCAACCAGCACAATC
GAAGTTCTTCCCAGACCGGTCACGCCTTTGCCTTCACCAACAGTTACCTG
TGCCACGGTGCCAGACCCCACCACGCCGACTACGCCTTCGCCATCTGTTA
TCAGGCGGAGCACCAACGAGGAGACCTATTTGACAACGACTGCAATCAGC
CCACTAACGCAACCGCTGGCAGCCATAGACGCATGCTACGATCTCAGCAG
AAAGGCAGGGGGAGCTGCTCCCGAAAGCCCCAAAAAGCGCAACGTCAACT
GGCACACGCCTATTCAGATATACGCTACCTACGAGCTGGGCGAAGAGCCG
TGCTCCAGCAGAAAAGTCGCAGAAGAAAGTGCGCCTGAGTCGGTTGGAGA
AAGATTGTGTTCCGTCAAGCCAGACTACCAGACGCGTCGAAACATCGGGG
AGGACGATGGCTTCGAGAGTCTGAATGGAAAGAGCTCAAGTGGAGAGGAC
AACAACCATTCGCCTTTGCCAAACGCGGTGGCTGTTGCGGCTCCACCAGC
TCCTGTTCAGACCAATCAGTTGCGTCTGCGATTAAACACAACAAACGGTG
TGACCGCCAGTGCTTCTCCAACCGAGAAGAAACCCCAGTCGCGCGGCAAT
GAATCCTCAACGAGTTGCGCCGAATCGGATGAGTGCGATGATGCCGACAT
TATGTCCAGTCCCGCCTCGGGCTGTAACCAAGAGTGCACCACTTCTGCCA
CCGACTGGCTGGGGGTGACGACAAATAGCGAAGACTGCAGTTACACCTCT
GATCTGGATCACTCTGACGGGGGCTTGAAGCACACGGCCTTTAGCGACGA
AGATCCTGGAGAGCTGGACATCACCCCTACCACTATACTAAATCCACATA
GCAGCCTCGACCGTATTAGCTGCACCATTTGGGATCAGCGAGATGCCAAA
AAGGCGCAGCTTTCCGTGCTGGAGATCGCGTCTTGCATAATCGAACGCGT
GGACTCAATGGGCGAGGCCAACGACTACATCTACATAGGCGTGGTCTTCT
CTTTCCTGCTCACATTGATTCCCATCTTCTGCCGTCTCTGCGAGGTCACA
CTCGGGAGCGATGCAGAGAAGGCCAGTGAGATTAGCTACTTTAACATGCC
GCAGCTGCTGTGGGAGAAGTCATCGGCATCGCTCTTCACCCTGCTGGGCC
TTGCCTTCGGCGACAGCCAGTGGGAGCGCATGGTATTGGCTCTGGGCTTT
GTCCAACGCCTTTGCCTGACCCTCATACTGTTCATAATATTCGCCGTTGC
AGAGCGCACCTTCAAGCAACGCTTCCTTTACGCCAAACTCTTCTCCCACC
TAACTTCATCACGTAGGGCTCGAAAGTCAAATCTTCCCCACTTCCGTTTG
AACAAGGTGCGTAACATCAAGACCTGGCTGAGCGTGAGGTCGTATTTGAA
GAAACGCGGACCCCAGCGATCGGTGGATATCATCGTTTCCGCCGCCTTCA
TAGTAACCCTCCTGTTGCTGGCCTTCCTCAGCGTCGAGTGGCTGAAGGAT
TCGGCTCATCTGCACACACACCTTACCTTGGAGGCCCTAATCTGGTCCAT
AACAATCGGTATCTTTCTGCTGCGCTTCATGACCCTAGGTCAGAAGATAC
AGCACAAGTACCGCAGTGTGTCGGTGCTGATTACGGAGCAAATTAACTTG
TATCTGCAGATCGAGCAGAAGCCAAAGAAAAAGGACGAGCTGATGGTGTC
GAACAGCGTGCTCAAGCTGGCCGCCGATCTGCTAAAGGAACTCGAAACGC
CATTCAAGCTCTCTGGCCTTAGTGCCAATCCATATCTATTCACAACCATC
AAGGTGGTAATCCTGTCGGCCCTATCGGGCGTGCTTAGCGAAGTTTTAGG
CTTTAAACTGAAGCTGCATAAAATCAAGATCAAGTAACCTATGCAAGGCG
CAGACCCATCATATTTTTGTAGTACAACTTTTTAGAAACGCTTTAAGAGA
AATCTAACACTACACTCTAAATTAGTTAAGTGAATAAATTTAAGCGAGCC
AAAAAAAAAAAAAAAAAAA

GH08636.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-RA 3462 phtf-RA 98..3149 1..3052 15260 100 Plus
phtf.b 3368 phtf.b 29..3077 1..3052 15190 99.9 Plus
phtf.c 3311 phtf.c 996..3020 1028..3052 10125 100 Plus
phtf.c 3311 phtf.c 29..997 1..969 4845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2630791..2631738 968..1915 4680 99.6 Plus
chr2R 21145070 chr2R 2632450..2633050 2450..3050 2990 99.8 Plus
chr2R 21145070 chr2R 2630234..2630743 459..968 2520 99.6 Plus
chr2R 21145070 chr2R 2632035..2632393 2093..2451 1795 100 Plus
chr2R 21145070 chr2R 2629094..2629349 1..256 1265 99.6 Plus
chr2R 21145070 chr2R 2631798..2631978 1916..2096 905 100 Plus
chr2R 21145070 chr2R 2630039..2630181 320..462 715 100 Plus
chr2R 21145070 chr2R 2629902..2629971 254..323 350 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6743592..6744539 968..1915 4740 100 Plus
2R 25286936 2R 6745251..6745853 2450..3052 3015 100 Plus
2R 25286936 2R 6743035..6743544 459..968 2550 100 Plus
2R 25286936 2R 6744836..6745194 2093..2451 1795 100 Plus
2R 25286936 2R 6741895..6742150 1..256 1280 100 Plus
2R 25286936 2R 6744599..6744779 1916..2096 905 100 Plus
2R 25286936 2R 6742840..6742982 320..462 715 100 Plus
2R 25286936 2R 6742703..6742772 254..323 350 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6744791..6745738 968..1915 4740 100 Plus
2R 25260384 2R 6746450..6747052 2450..3052 3015 100 Plus
2R 25260384 2R 6744234..6744743 459..968 2550 100 Plus
2R 25260384 2R 6746035..6746393 2093..2451 1795 100 Plus
2R 25260384 2R 6743094..6743349 1..256 1280 100 Plus
2R 25260384 2R 6745798..6745978 1916..2096 905 100 Plus
2R 25260384 2R 6744039..6744181 320..462 715 100 Plus
2R 25260384 2R 6743902..6743971 254..323 350 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:13:07 has no hits.

GH08636.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:14:12 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2631798..2631976 1916..2094 100 -> Plus
chr2R 2629094..2629348 1..255 99 -> Plus
chr2R 2629904..2629968 256..320 100 -> Plus
chr2R 2630040..2630179 321..460 100 -> Plus
chr2R 2630236..2630743 461..968 99 -> Plus
chr2R 2630792..2631738 969..1915 99 -> Plus
chr2R 2632037..2632393 2095..2451 100 -> Plus
chr2R 2632452..2633050 2452..3050 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:55 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..2643 295..2937 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:04 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..2643 295..2937 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:04:31 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..2643 295..2937 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:33 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..2643 295..2937 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:22:47 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..2643 295..2937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:06 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 29..3078 1..3050 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:04 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 29..3078 1..3050 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:04:31 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..3046 5..3050 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:34 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 29..3078 1..3050 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:22:47 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 1..3046 5..3050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:12 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6741895..6742149 1..255 100 -> Plus
2R 6742705..6742769 256..320 100 -> Plus
2R 6742841..6742980 321..460 100 -> Plus
2R 6743037..6743544 461..968 100 -> Plus
2R 6743593..6744539 969..1915 100 -> Plus
2R 6744599..6744777 1916..2094 100 -> Plus
2R 6744838..6745194 2095..2451 100 -> Plus
2R 6745253..6745851 2452..3050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:12 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6741895..6742149 1..255 100 -> Plus
2R 6742705..6742769 256..320 100 -> Plus
2R 6742841..6742980 321..460 100 -> Plus
2R 6743037..6743544 461..968 100 -> Plus
2R 6743593..6744539 969..1915 100 -> Plus
2R 6744599..6744777 1916..2094 100 -> Plus
2R 6744838..6745194 2095..2451 100 -> Plus
2R 6745253..6745851 2452..3050 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:12 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6741895..6742149 1..255 100 -> Plus
2R 6742705..6742769 256..320 100 -> Plus
2R 6742841..6742980 321..460 100 -> Plus
2R 6743037..6743544 461..968 100 -> Plus
2R 6743593..6744539 969..1915 100 -> Plus
2R 6744599..6744777 1916..2094 100 -> Plus
2R 6744838..6745194 2095..2451 100 -> Plus
2R 6745253..6745851 2452..3050 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:04:31 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2630210..2630274 256..320 100 -> Plus
arm_2R 2630346..2630485 321..460 100 -> Plus
arm_2R 2629400..2629654 1..255 100 -> Plus
arm_2R 2630542..2631049 461..968 100 -> Plus
arm_2R 2631098..2632044 969..1915 100 -> Plus
arm_2R 2632104..2632282 1916..2094 100 -> Plus
arm_2R 2632343..2632699 2095..2451 100 -> Plus
arm_2R 2632758..2633356 2452..3050 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:06 Download gff for GH08636.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6743094..6743348 1..255 100 -> Plus
2R 6743904..6743968 256..320 100 -> Plus
2R 6744040..6744179 321..460 100 -> Plus
2R 6744236..6744743 461..968 100 -> Plus
2R 6744792..6745738 969..1915 100 -> Plus
2R 6745798..6745976 1916..2094 100 -> Plus
2R 6746037..6746393 2095..2451 100 -> Plus
2R 6746452..6747050 2452..3050 100   Plus

GH08636.pep Sequence

Translation from 294 to 2936

> GH08636.pep
MKLDEIVAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELID
VDLVRGSTFPKAKPKQSLLTVIRLAILRYVLLPLYAQWWVKQTTPNAFGF
ILVLYLTQLTNWAIYVLHSSRIVPLDYEKPPNGTLLQAEADGDASDKDAD
KESEEHAALLSALLIPCALSLLISLIHSQIVATNTASGVSGGSSKNKLRR
ISASYLSDKAATRENRVRRRKKIVRVRQVEADLSQASSNISLPNRRTATS
TIEVLPRPVTPLPSPTVTCATVPDPTTPTTPSPSVIRRSTNEETYLTTTA
ISPLTQPLAAIDACYDLSRKAGGAAPESPKKRNVNWHTPIQIYATYELGE
EPCSSRKVAEESAPESVGERLCSVKPDYQTRRNIGEDDGFESLNGKSSSG
EDNNHSPLPNAVAVAAPPAPVQTNQLRLRLNTTNGVTASASPTEKKPQSR
GNESSTSCAESDECDDADIMSSPASGCNQECTTSATDWLGVTTNSEDCSY
TSDLDHSDGGLKHTAFSDEDPGELDITPTTILNPHSSLDRISCTIWDQRD
AKKAQLSVLEIASCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLCE
VTLGSDAEKASEISYFNMPQLLWEKSSASLFTLLGLAFGDSQWERMVLAL
GFVQRLCLTLILFIIFAVAERTFKQRFLYAKLFSHLTSSRRARKSNLPHF
RLNKVRNIKTWLSVRSYLKKRGPQRSVDIIVSAAFIVTLLLLAFLSVEWL
KDSAHLHTHLTLEALIWSITIGIFLLRFMTLGQKIQHKYRSVSVLITEQI
NLYLQIEQKPKKKDELMVSNSVLKLAADLLKELETPFKLSGLSANPYLFT
TIKVVILSALSGVLSEVLGFKLKLHKIKIK*

GH08636.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11068-PA 876 GF11068-PA 1..866 1..870 3587 80.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23220-PA 877 GG23220-PA 1..867 1..870 4172 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21753-PA 890 GH21753-PA 1..880 1..870 3119 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-PA 880 CG3268-PA 1..880 1..880 4482 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19299-PA 875 GI19299-PA 1..865 1..870 3066 71.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11117-PA 874 GL11117-PA 1..864 1..870 3484 77.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17066-PA 874 GA17066-PA 1..864 1..870 3476 77.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20896-PA 876 GM20896-PA 1..866 1..870 4159 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10421-PA 878 GD10421-PA 1..878 1..880 4473 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22176-PA 855 GJ22176-PA 1..845 1..870 3209 73 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22139-PA 880 GK22139-PA 1..870 1..870 3170 74.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19073-PA 877 GE19073-PA 1..867 1..870 4082 92.2 Plus

GH08636.hyp Sequence

Translation from 294 to 2936

> GH08636.hyp
MKLDEIVAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELID
VDLVRGSTFPKAKPKQSLLTVIRLAILRYVLLPLYAQWWVKQTTPNAFGF
ILVLYLTQLTNWAIYVLHSSRIVPLDYEKPPNGTLLQAEADGDASDKDAD
KESEEHAALLSALLIPCALSLLISLIHSQIVATNTASGVSGGSSKNKLRR
ISASYLSDKAATRENRVRRRKKIVRVRQVEADLSQASSNISLPNRRTATS
TIEVLPRPVTPLPSPTVTCATVPDPTTPTTPSPSVIRRSTNEETYLTTTA
ISPLTQPLAAIDACYDLSRKAGGAAPESPKKRNVNWHTPIQIYATYELGE
EPCSSRKVAEESAPESVGERLCSVKPDYQTRRNIGEDDGFESLNGKSSSG
EDNNHSPLPNAVAVAAPPAPVQTNQLRLRLNTTNGVTASASPTEKKPQSR
GNESSTSCAESDECDDADIMSSPASGCNQECTTSATDWLGVTTNSEDCSY
TSDLDHSDGGLKHTAFSDEDPGELDITPTTILNPHSSLDRISCTIWDQRD
AKKAQLSVLEIASCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLCE
VTLGSDAEKASEISYFNMPQLLWEKSSASLFTLLGLAFGDSQWERMVLAL
GFVQRLCLTLILFIIFAVAERTFKQRFLYAKLFSHLTSSRRARKSNLPHF
RLNKVRNIKTWLSVRSYLKKRGPQRSVDIIVSAAFIVTLLLLAFLSVEWL
KDSAHLHTHLTLEALIWSITIGIFLLRFMTLGQKIQHKYRSVSVLITEQI
NLYLQIEQKPKKKDELMVSNSVLKLAADLLKELETPFKLSGLSANPYLFT
TIKVVILSALSGVLSEVLGFKLKLHKIKIK*

GH08636.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-PA 880 CG3268-PA 1..880 1..880 4482 100 Plus