Clone GH08670 Report

Search the DGRC for GH08670

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:86
Well:70
Vector:pOT2
Associated Gene/TranscriptSas10-RA
Protein status:GH08670.pep: gold
Preliminary Size:1287
Sequenced Size:1653

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4202 2001-01-01 Release 2 assignment
CG4202 2001-07-04 Blastp of sequenced clone
CG4202 2003-01-01 Sim4 clustering to Release 3
Sas10 2008-04-29 Release 5.5 accounting
Sas10 2008-08-15 Release 5.9 accounting
Sas10 2008-12-18 5.12 accounting

Clone Sequence Records

GH08670.complete Sequence

1653 bp (1653 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047575

> GH08670.complete
CACGTGTTGTGTTTGATTTAATTTAGTTTTAATTTGTATTTAAACGCACA
GAGAGCAGCTAGCAAATGGACAGCGACGGTGACGACTACGTGATGAGCGG
CTCCGACCAGGAGTACGATGACGAGGAGCGCGAAATACTCGAAGATCTGC
GCAAGCAGCGCAAAAAGCCACATGATCCCGTCCAGGAAGTGCTCGGTTTC
AGTGATGATGACGACGACGACGACGACGACGACGAGGAGGAGCAGCAGGA
TGTGGCGGAACTGATGCGCGACAGTGACATCGAGGGCGCCGAAGACGATG
ACCGCGATCTGCCCAACACCATGGACTGGGGCAGCAAACGGAGCACGTAC
TACAACACCGACTTTGTGGACCAGGACTACAGCAGCTACAATGCCCAGGA
GGAGGAGCAGGCACGCGCCGAGGAGGAGGAGGCCAAAAAGATCCAGCTGC
GTCTGGCCAAGCGCATGAGCGAGGCCGATTTCCAGCTGGACAATGTAGAA
GCAGCGCCCGCAGGCAGCAGTGATGACAACGAGCTGAGCCATATAACCAA
AGTGACCAGCGATCTGGCCGGCCTATCAGAACGCGAGCGACGACAGCTGA
TGCACAGTGAGTCGCCGGAGTTCATCATTCTCACCCAGGATTTTCAACAG
CATCTCGACGAGGTGAAGAACCTATTGAAACCGGTGCTCAACTACGTTCG
CAAACACGATGTGCCCATGGTGCCGGCGCTGCAATATGCCGGACTCTGCC
ACACCGTGCTCACCACCTACTGCTCCAATGTGGCTTTCTATCTGCTGCTC
AAGGCACGTCGCATCGACGTCAAGGCCCATCCGGTGATTAGGCGGCTGGT
GCAACTCAAGGATCTGATCGAGGAGCTTAAGCCGCGCTACGAGGAATACA
TTCGACCGCAGCTGGAGGCGCTGCTGGAGAGGATTGAAGATGGCGATGCA
TTCACCGTGCTGGATGTGGCACAGCGCAAGGCTAAGCTGCAGATACTCAA
CAAGTACAACGATGGCCAGCAGGCGTCAGTGAGCTCCGATGATGATGATA
ATGATGACGATGACGATGCTGAGAGTAAGGAGAAGGATCTGCAAGAGGAG
GCTGGTGAGGAGGAGGAAGAGGAGGATGCGCGACGCGGCATCACCTATCA
GATGGCCAAGAACAAGGGCCTCACGCCGCACCGCAAAAAGGAGCTGCGCA
ATCCGCGCGTTAAGCATCGCGGCAAATACCGAAAGGCGCTCATCCGGCGC
AAGGGAGCCGTGCGCACGGTGCGCAAGGAGCTGCAGCGCTACGGCGGCGA
ATTGTCCGGCATCAAGGCCGGCGTCACGAAGAGCGTCAAGTTCCGCACCT
AGTTTTTATCCAATAAATCCGCCAAGATCATTACATTTTAATCAACTCGA
TGTTTGTACACTTGAAACACCCATTTCATCCAAAGACTCACCGGGGATTA
GTCAACTAGCTGTCATATGCGAAACAAACAAACATTTTTCTTCACTTGGT
TCATCAAGAAACCAATTTATATGAGTCGAAACAAAAATCATTGTCTTACA
ACAGTTTTTCTCTTTGTACAGTGTTCTCCAACCTTGTCTGTTTAGGTTGC
CTTAAATCTAAAAAAATATATGCTCCAAATCTTAAAAAAAAAAAAAAAAA
AAA

GH08670.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sas10-RA 1643 Sas10-RA 11..1643 1..1633 8165 100 Plus
Rnp4F-RB 3277 Rnp4F-RB 3129..3277 1633..1485 745 100 Minus
Rnp4F.a 3281 Rnp4F.a 3133..3281 1633..1485 745 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5209984..5211616 1..1633 8075 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5317439..5319071 1..1633 8165 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5325537..5327169 1..1633 8165 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:10:45 has no hits.

GH08670.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:11:41 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5209984..5211020 1..1037 96 == Plus
chrX 5211110..5211616 1127..1633 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:27:56 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 1..1287 66..1352 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:45 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 1..1287 66..1352 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:48:45 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 1..1287 66..1352 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:07 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 1..1287 66..1352 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:01 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 1..1287 66..1352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:28:54 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 11..1643 1..1633 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:45 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 11..1643 1..1633 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:48:45 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 31..1663 1..1633 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:07 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 11..1643 1..1633 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:01 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
Sas10-RA 31..1663 1..1633 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:41 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
X 5317439..5319071 1..1633 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:41 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
X 5317439..5319071 1..1633 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:11:41 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
X 5317439..5319071 1..1633 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:48:45 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5211472..5213104 1..1633 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:05 Download gff for GH08670.complete
Subject Subject Range Query Range Percent Splice Strand
X 5325537..5327169 1..1633 100   Plus

GH08670.pep Sequence

Translation from 65 to 1351

> GH08670.pep
MDSDGDDYVMSGSDQEYDDEEREILEDLRKQRKKPHDPVQEVLGFSDDDD
DDDDDDEEEQQDVAELMRDSDIEGAEDDDRDLPNTMDWGSKRSTYYNTDF
VDQDYSSYNAQEEEQARAEEEEAKKIQLRLAKRMSEADFQLDNVEAAPAG
SSDDNELSHITKVTSDLAGLSERERRQLMHSESPEFIILTQDFQQHLDEV
KNLLKPVLNYVRKHDVPMVPALQYAGLCHTVLTTYCSNVAFYLLLKARRI
DVKAHPVIRRLVQLKDLIEELKPRYEEYIRPQLEALLERIEDGDAFTVLD
VAQRKAKLQILNKYNDGQQASVSSDDDDNDDDDDAESKEKDLQEEAGEEE
EEEDARRGITYQMAKNKGLTPHRKKELRNPRVKHRGKYRKALIRRKGAVR
TVRKELQRYGGELSGIKAGVTKSVKFRT*

GH08670.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21336-PA 428 GF21336-PA 1..428 1..427 1510 75.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18752-PA 432 GG18752-PA 1..432 1..428 1719 84.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24611-PA 426 GH24611-PA 1..426 1..428 1386 63.5 Plus
Dgri\GH10330-PA 426 GH10330-PA 1..426 1..428 1352 63.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Sas10-PA 428 CG4202-PA 1..428 1..428 2202 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11074-PA 442 GI11074-PA 1..442 1..428 1314 64.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14291-PA 428 GL14291-PA 1..428 1..428 1393 68.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18026-PA 430 GA18026-PA 1..430 1..428 1389 68 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12400-PA 104 GM12400-PA 1..104 1..110 496 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16854-PA 435 GJ16854-PA 1..435 1..428 1314 67.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18547-PA 426 GK18547-PA 1..426 1..428 1386 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16393-PA 430 GE16393-PA 1..430 1..428 1631 80.2 Plus

GH08670.hyp Sequence

Translation from 65 to 1351

> GH08670.hyp
MDSDGDDYVMSGSDQEYDDEEREILEDLRKQRKKPHDPVQEVLGFSDDDD
DDDDDDEEEQQDVAELMRDSDIEGAEDDDRDLPNTMDWGSKRSTYYNTDF
VDQDYSSYNAQEEEQARAEEEEAKKIQLRLAKRMSEADFQLDNVEAAPAG
SSDDNELSHITKVTSDLAGLSERERRQLMHSESPEFIILTQDFQQHLDEV
KNLLKPVLNYVRKHDVPMVPALQYAGLCHTVLTTYCSNVAFYLLLKARRI
DVKAHPVIRRLVQLKDLIEELKPRYEEYIRPQLEALLERIEDGDAFTVLD
VAQRKAKLQILNKYNDGQQASVSSDDDDNDDDDDAESKEKDLQEEAGEEE
EEEDARRGITYQMAKNKGLTPHRKKELRNPRVKHRGKYRKALIRRKGAVR
TVRKELQRYGGELSGIKAGVTKSVKFRT*

GH08670.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sas10-PA 428 CG4202-PA 1..428 1..428 2202 100 Plus