Clone GH08671 Report

Search the DGRC for GH08671

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:86
Well:71
Vector:pOT2
Associated Gene/TranscriptSirt4-RC
Protein status:GH08671.pep: gold
Preliminary Size:2913
Sequenced Size:3028

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15773 2002-01-01 Sim4 clustering to Release 2
CG3187 2002-05-30 Blastp of sequenced clone
CG3187 2003-01-01 Sim4 clustering to Release 3
Sirt4 2008-04-29 Release 5.5 accounting
CG32758 2008-08-15 Release 5.9 accounting
Sirt4 2008-08-15 Release 5.9 accounting
CG32758 2008-12-18 5.12 accounting
Sirt4 2008-12-18 5.12 accounting

Clone Sequence Records

GH08671.complete Sequence

3028 bp (3028 high quality bases) assembled on 2002-05-30

GenBank Submission: BT011040

> GH08671.complete
CGAGCCATCCTCACGGCAGGCGTGCAGCCGAAAGCTCTTCATGCCCACGG
CGGGCACAACGTGTCCCTCCTTGCGACTATCACAGGAGCAGTGGGGAAAG
ACGACATCTCCGTATCCTGGCAGTGTGCGGGCCAAGGCCAGATAATCGCC
CGCTTTCTTGGCGTCCTGCAGCGCCTTCAGCTCATACAGGCGACCATCGG
CTCGGATATTGCCGCGATTCACCTCGTCGACCGCCTGATAGAAGATAAAG
CGGCCAGCCTGTTCGCCGTCCGGCAGCGTCAGCTCCTTGGCCACCGAGAA
GAGCCAGCGACGGACGCAAAGGCAGGTGGATGAGGCCGTGCTGTAGTTCT
GCACGTACAGCTGATGTGGAATCTCGTGCGGCTGCAGCTTTCGCTCAAAA
TTGTACTCGACAATCTCGAACAGGTAAAAATACTGCTGCGTGTAGGCGGT
GAGATTGGCGCGCTGCACCAGAATCTCCCACACCACCTGGGCATTGGAGG
ACTTTTTCACCGACACGGTGCTAACTTCGTGATCGGGCAGCATCACCTTA
ATGTCCACCGGCGATGCGGATATATCATCCTCCGTATCGGTGAGAAAGTC
CTGAACGGCATCGCTCTCGGCAATCACCCGCACAGCACAGACTTTCTCCA
GATACTGCTCCAGACCGCGCCGCCTCGTGTCCAGCTGCTGTTCGCTTAGC
TGGAAGGGCCACTTGCCGGGCAGCTTGGGGAAGTTAAAGCCGGAAAACTC
CTTGCGCAGCAGCGAGTGCAGGTTAGCAAACTCTCGATAGCGACGCGAAC
AGAGCTGCCTTCCAGCCATGTGTATATTGAAGACGATGTACCGCTCGCCA
TTTCGATTCACGATCCCATAGTCCGGTATGCTAATGGGCAGCGAGCGCTT
GTCCGAATAATCGATGTAGGAGTAACCGCTCTGATCCTCCTGCGGCTCCA
GTCGATCGGCCTCCTGCTGTGTCACTGATATCACCGTCAGAGTTAGGCAG
TCACCGCCGGATTTGATCAGATCTACGACCTGTTTATGTGTGGCTCCCTC
GACGCTGACGCCATTTACTTCCAGGATGCGATCGCCCTTCTTGATGCCCG
CCTTCTCGGCCGCCCCATTCTCAAGGACGGCGCTCACGTGCTGAAGGGGG
GCGTACAGCTCGCCGTTGATCGAGCGCAGTTGACCCCCCTCGGAAACTTG
GCCGCGCACATTGAAGCCGAAGCCCGTTTCCGTTTTGTAAATGGTGACGA
CACGGGGTCCATTCGCTGTGGTCACGCCTACGCCGACGCCCATGACGACC
GCGCCGCCCCCACCGCCGCCCGATGATGCGGTGACTACGGCGCTGGCGGG
GGTTGGGGTTGGGAGGGGATGGTTTTCGCCAACGATGCTCATTGCGCCGG
TCGTTCGCTCTCGCTCGCACTCAGTGGTGATGGCTGCTCTTCTGCCTCCA
CCGCACACCCCTCTCCACCTCCTCCTCCTCCTACGCTACTGCTGCTGCTG
CTGCCCCTTTCCGACGTTCCTGCTTTCCGACTCACAGCAGCGCTGTGTTG
TTTGCACAATATCTTTTGTTGTGTTATGGTTATTTCGCTCTTTTATTTTG
CGTAATGTTTTCTGCAACTTCTTTTCGGCACACACACAGCACAACACACA
CACACACGTATAGAGACAGGCACCGCCACTTTTACTTTTTACGCTCCTCC
CTCAATCCGCTTCACCGCTGTGAACTGCGCTCCACCGAAACTCCTCTGGC
TGCTCTTTCGTTCGCACACACATACACGCGCACACACCGAAAAAAAATTT
ATTATTTATGTGGCTTATTTTATTTAACACACGCCTGTGTTTTCGCTCCT
TATTTTATTTTCGCGCTGCTGTGCGTGCGCTCACCTCTAGTAACGTAACC
GAAAAAGAACCAAATATTACTTGCAATAATACATAACAAAACAATGCGTG
TGGGCCAGCTGCTCCGCTTCCGGAGCACCAGCTTGCGCAGCTCCACCGCC
AGGCAGGAGTACGTGCCGCATCACAAGCCCGTCGTGGAGGACGACATCAA
ACGGCTGGAGGACTTTCTCCTGTCCAAACCGAATGTTTTGGTTCTCACGG
GCGCTGGCATCTCGACGGAATCGGGGATTCCCGATTACCGTTCCGAAGGC
GTGGGCCTCTACGCCCGCTCCAACCACAAGCCCGTCCAGCACATGGAGTT
CGTCAAGTCGTCGGCGGTGCGCAAGCGGTACTGGGCCAGGAACTTTGTGG
GCTGGCCCAAGTTTTCTGCCACACAGCCCAATGCCACGCATCACGCGCTG
GCCAGATTCGAGCGGGAGGAGCGGGTCCAGGCGGTGGTCACCCAGAACGT
GGACCGGCTGCACACGAAGGCGGGCAGCCGAAATGTTGTGGAGGTTCATG
GCAGTGGCTATGTGGTCAAGTGCCTGTCATGCGAGTACCGGATCGATCGT
CACGAGTTCCAGAGCATACTGGCGTCGCTAAATCCGGCCTTCAAAGATGC
CCCCGACATGATCCGGCCCGATGGCGATGTAGAGATACCGCTGGAGTACA
TCGAGAACTTCCGGATACCCGAGTGTACGCAGTGCGGCGGCGACTTGAAG
CCGGAAATTGTCTTCTTCGGAGATTCTGTGCCTCGGCCACGAGTGGATCA
GATTGCCGGCATGGTGTACAATAGCGATGGCCTGCTTGTCCTCGGGTCCA
GTCTCCTGGTCTTCTCCGGCTACCGCGTTGTCCTGCAGACCAAGGACCTC
AAGCTACCGGTGGGCATTGTTAATATTGGCGAAACGCGCGCCGATCACCT
GGCGGATATCAAGATATCCGCCAAGTGCGGCGATGTCATACCCAAACTGT
TCGACTTTCGCAATTCGAAAAGCGTCAGTTAATACTCACAGTTGTTATAT
GTTGACCCCCACTAAATTTGTAGTTATGGAAAGCCAGGCTTTCTATTTTA
GCTAAAAAATAAATGTTAATGATTACTATTTGCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH08671.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32758.f 4480 CG32758.f 411..2279 1869..1 9345 100 Minus
CG32758.e 4445 CG32758.e 121..1989 1869..1 9345 100 Minus
CG32758-RA 4231 CG32758-RA 162..2030 1869..1 9345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5557025..5557884 2983..2124 4255 99.7 Minus
chrX 22417052 chrX 5614641..5615479 44..882 4090 99.2 Plus
chrX 22417052 chrX 5629523..5630325 1067..1869 4015 100 Plus
chrX 22417052 chrX 5558084..5558339 2125..1870 1280 100 Minus
chrX 22417052 chrX 5615696..5615799 963..1066 520 100 Plus
chrX 22417052 chrX 5615551..5615635 881..965 410 98.8 Plus
chrX 22417052 chrX 5614531..5614575 1..45 225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5664625..5665487 2986..2124 4315 100 Minus
X 23542271 X 5722207..5723045 44..882 4195 100 Plus
X 23542271 X 5737099..5737901 1067..1869 4015 100 Plus
X 23542271 X 5665687..5665942 2125..1870 1280 100 Minus
X 23542271 X 5723259..5723362 963..1066 520 100 Plus
X 23542271 X 5723114..5723198 881..965 425 100 Plus
X 23542271 X 5722097..5722141 1..45 225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5672723..5673585 2986..2124 4315 100 Minus
X 23527363 X 5730305..5731143 44..882 4195 100 Plus
X 23527363 X 5745197..5745999 1067..1869 4015 100 Plus
X 23527363 X 5673785..5674040 2125..1870 1280 100 Minus
X 23527363 X 5731357..5731460 963..1066 520 100 Plus
X 23527363 X 5731212..5731296 881..965 425 100 Plus
X 23527363 X 5730195..5730239 1..45 225 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:44:40 has no hits.

GH08671.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:45:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5615697..5615799 964..1066 100 <- Plus
chrX 5614531..5614574 1..44 100 <- Plus
chrX 5614642..5615477 45..880 99 <- Plus
chrX 5615551..5615633 881..963 98 <- Plus
chrX 5629523..5630325 1067..1869 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:57:55 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
Sirt4-RC 1..939 1944..2882 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:42 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
Sirt4-RC 1..939 1944..2882 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:27:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
Sirt4-RC 1..939 1944..2882 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:20 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
Sirt4-RC 1..939 1944..2882 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:22:55 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
Sirt4-RC 1..939 1944..2882 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:55 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG32758-RA 139..2007 1..1869 100   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:42 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG32758-RA 139..2007 1..1869 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG32758-RA 131..1999 1..1869 100   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:22 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG32758-RA 139..2007 1..1869 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:22:55 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
CG32758-RA 131..1999 1..1869 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
X 5722097..5722140 1..44 100 <- Plus
X 5722208..5723043 45..880 100 <- Plus
X 5723114..5723196 881..963 100 <- Plus
X 5723260..5723362 964..1066 100 <- Plus
X 5737099..5737901 1067..1869 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
X 5722097..5722140 1..44 100 <- Plus
X 5722208..5723043 45..880 100 <- Plus
X 5723114..5723196 881..963 100 <- Plus
X 5723260..5723362 964..1066 100 <- Plus
X 5737099..5737901 1067..1869 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
X 5722097..5722140 1..44 100 <- Plus
X 5722208..5723043 45..880 100 <- Plus
X 5723114..5723196 881..963 100 <- Plus
X 5723260..5723362 964..1066 100 <- Plus
X 5737099..5737901 1067..1869 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:48 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5616130..5616173 1..44 100 <- Plus
arm_X 5616241..5617076 45..880 100 <- Plus
arm_X 5617147..5617229 881..963 100 <- Plus
arm_X 5617293..5617395 964..1066 100 <- Plus
arm_X 5631132..5631934 1067..1869 100 == Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:52 Download gff for GH08671.complete
Subject Subject Range Query Range Percent Splice Strand
X 5730306..5731141 45..880 100 <- Plus
X 5731212..5731294 881..963 100 <- Plus
X 5731358..5731460 964..1066 100 <- Plus
X 5745197..5745999 1067..1869 100 == Plus
X 5730195..5730238 1..44 100 <- Plus

GH08671.hyp Sequence

Translation from 1240 to 1662

> GH08671.hyp
MVTTRGPFAVVTPTPTPMTTAPPPPPPDDAVTTALAGVGVGRGWFSPTML
IAPVVRSRSHSVVMAALLPPPHTPLHLLLLLRYCCCCCPFPTFLLSDSQQ
RCVVCTISFVVLWLFRSFILRNVFCNFFSAHTQHNTHTHV*
Sequence GH08671.hyp has no blast hits.

GH08671.pep Sequence

Translation from 1943 to 2881

> GH08671.pep
MRVGQLLRFRSTSLRSSTARQEYVPHHKPVVEDDIKRLEDFLLSKPNVLV
LTGAGISTESGIPDYRSEGVGLYARSNHKPVQHMEFVKSSAVRKRYWARN
FVGWPKFSATQPNATHHALARFEREERVQAVVTQNVDRLHTKAGSRNVVE
VHGSGYVVKCLSCEYRIDRHEFQSILASLNPAFKDAPDMIRPDGDVEIPL
EYIENFRIPECTQCGGDLKPEIVFFGDSVPRPRVDQIAGMVYNSDGLLVL
GSSLLVFSGYRVVLQTKDLKLPVGIVNIGETRADHLADIKISAKCGDVIP
KLFDFRNSKSVS*

GH08671.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20910-PA 312 GF20910-PA 1..312 1..312 1456 89.4 Plus
Dana\GF16275-PA 762 GF16275-PA 107..348 30..305 218 27 Plus
Dana\GF23025-PA 394 GF23025-PA 82..267 48..256 204 26.6 Plus
Dana\GF14221-PA 835 GF14221-PA 229..445 40..256 196 29.4 Plus
Dana\GF17531-PA 332 GF17531-PA 30..150 31..169 168 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18482-PA 312 GG18482-PA 1..312 1..312 1633 97.8 Plus
Dere\GG11640-PA 769 GG11640-PA 100..347 21..305 210 26.6 Plus
Dere\GG23867-PA 385 GG23867-PA 80..265 48..256 199 25.7 Plus
Dere\GG23816-PA 828 GG23816-PA 221..429 48..256 194 30 Plus
Dere\GG17292-PA 325 GG17292-PA 29..144 30..163 158 32.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12046-PA 304 GH12046-PA 1..304 1..310 1312 81.6 Plus
Dgri\GH18681-PA 810 GH18681-PA 90..339 21..307 206 26.9 Plus
Dgri\GH11392-PA 886 GH11392-PA 248..457 47..256 200 29.4 Plus
Dgri\GH13301-PA 340 GH13301-PA 29..266 30..302 170 23.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sirt4-PC 312 CG3187-PC 1..312 1..312 1620 100 Plus
Sirt4-PB 229 CG3187-PB 1..229 84..312 1195 100 Plus
Sirt4-PA 229 CG3187-PA 1..229 84..312 1195 100 Plus
Sirt1-PA 823 CG5216-PA 224..432 48..256 196 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16299-PA 303 GI16299-PA 1..300 1..306 1301 80.7 Plus
Dmoj\GI24191-PA 802 GI24191-PA 88..337 21..307 217 27.8 Plus
Dmoj\GI10678-PA 345 GI10678-PA 50..236 47..256 215 27.5 Plus
Dmoj\GI18096-PA 891 GI18096-PA 239..455 40..256 199 28.9 Plus
Dmoj\GI18164-PA 334 GI18164-PA 29..266 30..302 167 23.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18326-PA 315 GL18326-PA 1..312 1..312 1348 81.4 Plus
Dper\GL24255-PA 797 GL24255-PA 89..338 21..307 208 26.8 Plus
Dper\GL24742-PA 864 GL24742-PA 228..444 40..256 193 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16538-PA 315 GA16538-PA 1..312 1..312 1348 81.4 Plus
Dpse\GA10903-PA 797 GA10903-PA 89..338 21..307 212 27.1 Plus
Dpse\GA18743-PA 864 GA18743-PA 228..444 40..256 193 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12631-PA 312 GM12631-PA 1..312 1..312 1635 98.7 Plus
Dsec\GM23107-PA 386 GM23107-PA 81..266 48..256 200 26.3 Plus
Dsec\GM10169-PA 824 GM10169-PA 221..429 48..256 199 30 Plus
Dsec\GM26176-PA 325 GM26176-PA 30..144 31..163 155 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16246-PA 312 GD16246-PA 1..312 1..312 1635 98.7 Plus
Dsim\GD19348-PA 386 GD19348-PA 81..266 48..256 201 25.7 Plus
Dsim\GD23867-PA 826 GD23867-PA 223..431 48..256 196 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16687-PA 303 GJ16687-PA 1..302 1..308 1321 82.1 Plus
Dvir\GJ23031-PA 345 GJ23031-PA 50..236 47..256 214 27.4 Plus
Dvir\GJ10538-PA 800 GJ10538-PA 88..337 21..307 213 27.3 Plus
Dvir\GJ16866-PA 860 GJ16866-PA 248..456 48..256 198 29.5 Plus
Dvir\GJ14596-PA 340 GJ14596-PA 29..266 30..302 170 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19907-PA 312 GK19907-PA 1..309 1..308 1413 86.7 Plus
Dwil\GK22445-PA 354 GK22445-PA 51..236 48..256 209 28.1 Plus
Dwil\GK22570-PA 778 GK22570-PA 86..346 8..307 206 26.1 Plus
Dwil\GK15314-PA 795 GK15314-PA 211..427 40..256 206 29.8 Plus
Dwil\GK15262-PA 337 GK15262-PA 26..152 27..171 172 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16799-PA 312 GE16799-PA 1..312 1..312 1636 97.4 Plus
Dyak\GE23831-PA 769 GE23831-PA 100..347 21..305 212 26.9 Plus
Dyak\GE25662-PA 385 GE25662-PA 79..265 47..256 206 26.3 Plus
Dyak\GE18618-PA 828 GE18618-PA 221..429 48..256 193 30 Plus
Dyak\GE24693-PA 325 GE24693-PA 29..144 30..163 156 31.4 Plus