Clone GH08708 Report

Search the DGRC for GH08708

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:87
Well:8
Vector:pOT2
Associated Gene/TranscriptPex5-RA
Protein status:GH08708.pep: gold
Preliminary Size:1680
Sequenced Size:2176

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14815 2002-01-01 Sim4 clustering to Release 2
CG14815 2002-05-18 Blastp of sequenced clone
CG14815 2003-01-01 Sim4 clustering to Release 3
CG14815 2008-04-29 Release 5.5 accounting
CG14815 2008-08-15 Release 5.9 accounting
CG14803 2008-08-15 Release 5.9 accounting
CG14815 2008-12-18 5.12 accounting
CG14803 2008-12-18 5.12 accounting

Clone Sequence Records

GH08708.complete Sequence

2176 bp (2176 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118757

> GH08708.complete
GCAAGTGTAGACCGTCGACTAGGTCCTCTTCGCTATCGTCCACGTCTATT
TGCGCGCTCAGGGTTTCCTGCTTCTGTGTCGCCTGTATGAAGGTAGCCAG
GATCTCCTCGTCATCCGACTGAAAAAGGTCGTAGTCCATGGTGCAGTCGG
GGATTTGGCGTTCGAAACCAATTCTCTGGCGGATAAGATTTTGCGCGGCG
ATATATTTTATTATTATTAGAGCGCTGTGCAACACTGTCACAAAGCCGAT
AGCTTCGATAACGGCCGATAAACAGTTACGTAGCATCTCCACTTCGAACA
CCATGTCTTTCCGCCCATTGGTCGAGGGCGACTGCGGTGGAGTTAATCCT
CTCATGCAACTGGGCGGACAGTTCACCCGCGATGTTGCCCACAAGGATGA
GGGCTATGTGCAGCGACACTTCGAGCGCGCTGCTCGTCCCGAGGACCAGT
TGATCAACGAGTTCCTGGGACAGGTCACTGCCCCACCGCAGTCATTTCAG
ATGGACACTCTGCTCCAGGAGATGCGGGACATAAATATTCACGGAAATCC
GCAGCAGCAGATGCACTCTCAGCAGGCGGAGCAGTGGGGACAGGACTTTG
CCCGCGGACTGGCACCCGCCCTGCCCAACAAGATGATCCACATGCAGGCA
CAGCAGCAGGACCTGCAGCATGCCCAGGAGTTCTTCGACGAGCCCCTGAT
CAGTAGCCAGAACTTTCGGTCCCTGCCGCCATTGCGTCAGCCTTTGATGC
CCATTGCGGCAGGACAGCAACAGGACCCCTTCTTTGACTCCGCCATGGAA
ACTATAATCACAGATCATCTGCCACAGGCGCCACAGGGGGAATCGCTGGA
CGACTGGATCAGCGACTACCAGCGCAGCACCGAACAAAAAGAGCAAACCG
CCGCCAACTTCAACGAAAAGTTCTGGGAGCGGCTGCAAGACGAGTGGCAG
AAGCTGGCCGACGAGAACGAGCATCCGTGGCTGTCGGAGTACAACGACAA
TATGGACGCTTATAAGGAGTACGAGTTCGCCGAGGGCAACCCCATGTCTG
ATGTGGAGAACCCGTTTGAAAAGGGTAAGGAGTACCTGTCCAAAGGGGAT
ATACCCAGCGCAGTTCTATGTTTCGAGGTGGCGGCCAAAAAGCAACCGGA
GCGCGCTGAGGTCTGGCAGTTGCTGGGCACTTCGCAGACAGAGAACGAAA
TGGATCCCCAGGCCATTGCGGCACTTAAGCGGGCTTACGACTTGCAACCG
GACAACCAACAGGTCCTGATGGCCCTGGCCGCGTGCTACACCAACGAGGG
CCTGCAGAACAACGCCGTGCGCATGCTGTGCAACTGGCTGACAGTGCATC
CCAAGTATCAGCACCTGGTCGCAGCCCATCCGGAGCTGCAGGCCGAGGGC
ACTTCGTTGGCTTCGTCGCTGATTGGTCCGAGTAAGCTGCGCGATCTGCA
GCAGATCTACTTGGAAGCCGTTCGACAGCACCCTTCGGAGGTGGATGCCG
AAGTCCAGGATGCCCTCGGCGTGCTCTACAATCTATCTGGGGAGTTCGAC
AAGGCGGTGGACTGCTACCAGTCCGCTCTGCAGGTGGATCCCCAAAATGC
GAAGACATGGAACCGATTGGGGGCCAGTTTGGCCAACGGCTCGCGCTCCG
TGGAGGCGGTGGAGGCTTATCAGCAGGCGCTGCAGCTCCAACCGGGCTTC
ATCCGTGTGCGTTACAACGTGGGCGTATGTTGCATGAACCTTAAGGCCTA
CAAGGAAGCTGTGGAGCACTTACTCACAGCGCTTACCATGCAGGCTCACA
CTAACGCCGCCCGAGAGCTGCCCAATGCGGCGATGGCGGCTACCTTTAGA
GGACAGAACCAGATGTCCGAGTCTATTTGGAGTACGCTGAAGATGGTCAT
TTCGCTGATGGGCCGCAGCGATCTCCAGAGTTATGTGAGCGATCGCAATC
TGGCGGCTCTTAATGAGGCCTTTAAGGATTAACCGCCCCGCAGCTTCTTT
ATCACTGCTTTGGGAAAGTCCGTTGTTGTCGTGTCATGTGGGTGTGTAAG
GTTGAATTTGAGATATTTTTTACTCTGGCAGTGTAATCATTCCCTCTCGG
TTCTTTTCTGTAAATTTGTATATTTTCTTACATTTAAGAAATTAAATAAC
TGTTGGATAAAAAAAAAAAAAAAAAA

GH08708.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14815-RA 2158 CG14815-RA 1..2158 1..2158 10790 100 Plus
CG14815-RB 1928 CG14815-RB 43..1928 273..2158 9430 100 Plus
CG14803.b 3431 CG14803.b 1..274 274..1 1370 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1760675..1762560 2158..273 9430 100 Minus
chrX 22417052 chrX 1762630..1762904 275..1 1375 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:38:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866829..1868717 2161..273 9445 100 Minus
X 23542271 X 1868787..1869061 275..1 1375 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1874927..1876815 2161..273 9445 100 Minus
X 23527363 X 1876885..1877159 275..1 1375 100 Minus
Blast to na_te.dros performed 2019-03-15 19:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 684..787 2144..2036 118 60.6 Minus

GH08708.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:11:01 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1760675..1762557 276..2158 100 <- Minus
chrX 1762630..1762904 1..275 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:28:10 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14815-RA 1..1845 138..1982 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:46:31 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14815-RA 1..1845 138..1982 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:44:21 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
Pex5-RA 1..1845 138..1982 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:47 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14815-RA 1..1845 138..1982 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:13 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
Pex5-RA 1..1845 138..1982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:22:12 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14815-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:46:31 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14815-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:44:21 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
Pex5-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:47 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14815-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:13 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
Pex5-RA 1..2158 1..2158 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:11:01 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866832..1868714 276..2158 100 <- Minus
X 1868787..1869061 1..275 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:11:01 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866832..1868714 276..2158 100 <- Minus
X 1868787..1869061 1..275 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:11:01 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866832..1868714 276..2158 100 <- Minus
X 1868787..1869061 1..275 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:44:21 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1762820..1763094 1..275 100   Minus
arm_X 1760865..1762747 276..2158 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:12 Download gff for GH08708.complete
Subject Subject Range Query Range Percent Splice Strand
X 1874930..1876812 276..2158 100 <- Minus
X 1876885..1877159 1..275 100   Minus

GH08708.pep Sequence

Translation from 137 to 1981

> GH08708.pep
MVQSGIWRSKPILWRIRFCAAIYFIIIRALCNTVTKPIASITADKQLRSI
STSNTMSFRPLVEGDCGGVNPLMQLGGQFTRDVAHKDEGYVQRHFERAAR
PEDQLINEFLGQVTAPPQSFQMDTLLQEMRDINIHGNPQQQMHSQQAEQW
GQDFARGLAPALPNKMIHMQAQQQDLQHAQEFFDEPLISSQNFRSLPPLR
QPLMPIAAGQQQDPFFDSAMETIITDHLPQAPQGESLDDWISDYQRSTEQ
KEQTAANFNEKFWERLQDEWQKLADENEHPWLSEYNDNMDAYKEYEFAEG
NPMSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQ
TENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNW
LTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPS
EVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLAN
GSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALT
MQAHTNAARELPNAAMAATFRGQNQMSESIWSTLKMVISLMGRSDLQSYV
SDRNLAALNEAFKD*

GH08708.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21075-PA 565 GF21075-PA 1..565 56..614 2457 82.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12676-PA 557 GG12676-PA 1..557 56..614 2909 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24299-PA 559 GH24299-PA 1..559 56..614 2192 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pex5-PA 614 CG14815-PA 1..614 1..614 3213 100 Plus
Pex5-PB 559 CG14815-PB 1..559 56..614 2932 100 Plus
sxc-PB 1059 CG10392-PB 227..465 313..558 167 24.7 Plus
sxc-PA 1059 CG10392-PA 227..465 313..558 167 24.7 Plus
sxc-PC 1059 CG10392-PC 227..465 313..558 167 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11045-PA 476 GI11045-PA 1..456 56..504 1577 64.9 Plus
Dmoj\GI11045-PA 476 GI11045-PA 262..476 461..614 259 35.8 Plus
Dmoj\GI18858-PA 1052 GI18858-PA 219..457 313..558 161 25.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20216-PA 552 GL20216-PA 1..552 56..614 2581 85.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13268-PA 552 GA13268-PA 1..552 56..614 2573 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18948-PA 614 GM18948-PA 1..614 1..614 3217 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24623-PA 237 GD24623-PA 1..237 378..614 1247 98.7 Plus
Dsim\GD24622-PA 215 GD24622-PA 1..195 1..195 1007 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17042-PA 553 GJ17042-PA 1..553 56..614 2310 76.8 Plus
Dvir\GJ20442-PA 1050 GJ20442-PA 218..456 313..558 156 25.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25053-PA 574 GK25053-PA 3..574 57..614 2181 75.4 Plus
Dwil\GK21381-PA 1059 GK21381-PA 224..462 313..558 155 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16506-PA 557 GE16506-PA 1..557 56..614 2904 96.6 Plus

GH08708.hyp Sequence

Translation from 137 to 1981

> GH08708.hyp
MVQSGIWRSKPILWRIRFCAAIYFIIIRALCNTVTKPIASITADKQLRSI
STSNTMSFRPLVEGDCGGVNPLMQLGGQFTRDVAHKDEGYVQRHFERAAR
PEDQLINEFLGQVTAPPQSFQMDTLLQEMRDINIHGNPQQQMHSQQAEQW
GQDFARGLAPALPNKMIHMQAQQQDLQHAQEFFDEPLISSQNFRSLPPLR
QPLMPIAAGQQQDPFFDSAMETIITDHLPQAPQGESLDDWISDYQRSTEQ
KEQTAANFNEKFWERLQDEWQKLADENEHPWLSEYNDNMDAYKEYEFAEG
NPMSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQ
TENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNW
LTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPS
EVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLAN
GSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALT
MQAHTNAARELPNAAMAATFRGQNQMSESIWSTLKMVISLMGRSDLQSYV
SDRNLAALNEAFKD*

GH08708.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pex5-PA 614 CG14815-PA 1..614 1..614 3213 100 Plus
Pex5-PB 559 CG14815-PB 1..559 56..614 2932 100 Plus
sxc-PB 1059 CG10392-PB 227..465 313..558 167 24.7 Plus
sxc-PA 1059 CG10392-PA 227..465 313..558 167 24.7 Plus
sxc-PC 1059 CG10392-PC 227..465 313..558 167 24.7 Plus