Clone GH08754 Report

Search the DGRC for GH08754

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:87
Well:54
Vector:pOT2
Associated Gene/TranscriptCG45078-RA
Protein status:GH08754.pep: gold
Sequenced Size:1912

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
fau-RD 2009-07-27 Manual selection by Sue Celniker

Clone Sequence Records

GH08754.complete Sequence

1912 bp assembled on 2010-01-08

GenBank Submission: BT120109.1

> GH08754.complete
AACAACACGCAACGACGATATATCCGAACCAAAATCCAACGAACAATTCT
ATTTGAAAACTCTCAAAGCATCCAAATCTAAAAATCTCAACATGGTTTAC
GAAAGTGGATTTACGACCCGCAGAACCTACTCCTCGAGGCCGGTGACAAC
TTCCTACGCAGTTACGAGAACGAAGAGAACACCAATTGACTGGGAGAAAG
TTCCGTTCGTGCCGCGGCCGTCGCTCATCTCGGATCCGGTGACCGCCTTC
GGAGTGCGGCGTCCCGATCTCGAGCGGCGCCAGCGGTCGATCCTCGATCC
GATCAATCGGGCCTCCATCAAGCCCGACTACAAGCTGGCCTACGAGCCCA
TTGAGCCGTATGTCTCCACCCGGGACAAGAACCGGACGCGGATCCTGGGC
ATGGTGCGCCAGCACATCGACACCGTGGAGGCGGGTGGCAATACCGCCGG
CCGCACCTTCCGCGACAGTCTGGACGCCCAGCTGCCGCGACTCCATCGCG
CCGTCTCCGAGTCCTTGCCAGTTCGCCGGGAGACCTACCGCAACGAGAGG
TCGGGCGCGATGGTCACCAAGTACTCCTACTAGGGGAGCATCATCCTATT
CACCCAACCGATAACCCGAACCCAATCGAAGCCTAGTCGAACGAACCTAG
TCGTATCTAAGGACACATAACCAACTAAAACAGACAAAAAAAAAACTGAA
AATGCATTCAAAATAATGATAGGCCTACATATAGTCTAGCCATAGTCCAT
ATAATCTTGTGTTAACCCACTAAACACTGAACAAGTTTTTACTCTACACA
GAGAAAAAGTAGAACTTTTAGACATTCTATCCAGAATACGTTGTAATCGA
AATATTTCCATTTTAGCAGTACGCTCTATAGAAATTGTTCAATGAGATTC
CAACTACAAACGGTCAGTGCTTTTTTCTCTGTGTACCCATGTATCTAACG
TTTCATTCATAGACTCATAGCATTTGTGTGCATAGATGGTTGCATTAAGC
TCTTAACTCTAAAGTAAAACAGTTCGAACATGTTTCAATTTCCCCAATTG
AGTCGCCTTGCGTTCTTTGGCCATTTGCATACAGCAGTTCGTGGAGCAGC
AGGAGCAAGTTTAATCCTTTTATGATGCTTGTGCTGCCAATGCCGAAATA
GAAACCAAAACCAAAACCAAACCAAACCTTATCTCTATATCACTATCAAA
TCGGAATTTATAGACTCCACGCTTAGACCTGTGCACGGACAGACCGGGCT
CGCACCGCAGCCGGGCCTCCTCGGACTACTCGTACACCTCGAAGTCGTCC
GTGGAGAAGAGCAGCTACGACTCGAGCAACCCGCACTCGTACCGCCCGGA
GCGCTCCACGTACACGTCGACTGTGGAGAAGACGTCGCGCAGCGGTCCCG
GCGGCTCGTACAACTACAGCACAGAGCGGACCAGCACCACTGGCGCCGGA
CCCGGTGGCTACAGCTATTCTTCGACCACCAGCGGCAACCTGCCCGGCGG
CACCAAGTACCGCCACTTCTCCTACCACGTGTAGGAGACGCACAGCGTCA
AAGGATCGGCGTTGGCTGTCCACGGCTTTGAATGTTATGGTGCCCACTAA
TACGTCATTGTTCTGAATTTATATATATATATAAATATATACATTTTGCA
AATAATCCACTTAACCCGCTAACCTTGAGTGCCCATATATATATATATAT
ATTTGTATACGAAGTTTTCAATGATGATGTATTTTCGTTTTGACTTGGAC
TAATCACCACTAATGCCCAAATAGTTTCGCATATAGACTAGATTAACCGA
ACAAGATCAACAATTTCTGTGTGTATTTGCAACCTTCAAGAAGTCATGTT
AAAACATATTTGTGATACAATAAAATAAACACGGTCTTATCTCAAAAAAA
AAAAAAAAAAAA

GH08754.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
fau.j 2101 fau.j 67..1962 1..1896 9480 100 Plus
fau.h 949 fau.h 252..949 1..698 3490 100 Plus
fau.d 1364 fau.d 542..1225 1213..1896 3420 100 Plus
fau.d 1364 fau.d 377..543 1..167 835 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6598859..6600586 1893..166 8640 100 Minus
chr3R 27901430 chr3R 6602697..6602862 166..1 830 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10773336..10775066 1896..166 8655 100 Minus
3R 32079331 3R 10777177..10777342 166..1 830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10514167..10515897 1896..166 8655 100 Minus
3R 31820162 3R 10518008..10518173 166..1 830 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:42:57 has no hits.

GH08754.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:44:11 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6598859..6600585 167..1893 98 <- Minus
chr3R 6602697..6602862 1..166 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-08 11:04:09 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RB 1..492 92..583 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:52:07 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RB 1..492 92..583 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:29 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RB 1..492 92..583 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:39 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
CG45078-RA 1..492 92..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 11:04:09 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RB 20..707 1..688 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:52:07 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RB 27..714 1..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:29 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RB 33..1925 1..1893 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:39 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
CG45078-RA 33..1925 1..1893 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:11 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10777177..10777342 1..166 100   Minus
3R 10773339..10775065 167..1893 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:11 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10777177..10777342 1..166 100   Minus
3R 10773339..10775065 167..1893 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:11 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10777177..10777342 1..166 100   Minus
3R 10773339..10775065 167..1893 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:29 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6599061..6600787 167..1893 100 <- Minus
arm_3R 6602899..6603064 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:28:15 Download gff for GH08754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10514170..10515896 167..1893 100 <- Minus
3R 10518008..10518173 1..166 100   Minus

GH08754.hyp Sequence

Translation from 1 to 582

> GH08754.hyp
TTRNDDISEPKSNEQFYLKTLKASKSKNLNMVYESGFTTRRTYSSRPVTT
SYAVTRTKRTPIDWEKVPFVPRPSLISDPVTAFGVRRPDLERRQRSILDP
INRASIKPDYKLAYEPIEPYVSTRDKNRTRILGMVRQHIDTVEAGGNTAG
RTFRDSLDAQLPRLHRAVSESLPVRRETYRNERSGAMVTKYSY*

GH08754.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG45078-PA 163 CG45078-PA 1..163 31..193 842 100 Plus

GH08754.pep Sequence

Translation from 1 to 582

> GH08754.pep
TTRNDDISEPKSNEQFYLKTLKASKSKNLNMVYESGFTTRRTYSSRPVTT
SYAVTRTKRTPIDWEKVPFVPRPSLISDPVTAFGVRRPDLERRQRSILDP
INRASIKPDYKLAYEPIEPYVSTRDKNRTRILGMVRQHIDTVEAGGNTAG
RTFRDSLDAQLPRLHRAVSESLPVRRETYRNERSGAMVTKYSY*

GH08754.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17091-PA 851 GF17091-PA 1..157 31..187 761 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19567-PA 895 GH19567-PA 1..157 31..187 746 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG45078-PA 163 CG45078-PA 1..163 31..193 842 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23863-PA 912 GI23863-PA 1..157 31..187 729 86 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21932-PA 798 GL21932-PA 1..167 31..193 665 77.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19674-PC 163 GA19674-PC 1..163 31..193 739 85.3 Plus
Dpse\GA19674-PF 827 GA19674-PF 1..167 31..193 668 77.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10576-PA 887 GJ10576-PA 1..167 31..193 679 79 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13394-PA 891 GK13394-PA 1..157 31..187 748 89.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fau-PA 907 GE24668-PA 1..157 31..187 841 99.4 Plus