Clone GH08776 Report

Search the DGRC for GH08776

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:87
Well:76
Vector:pOT2
Associated Gene/TranscriptCG33057-RA
Protein status:GH08776.pep: gold
Preliminary Size:2941
Sequenced Size:3123

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
mkg-p 2008-04-29 Release 5.5 accounting
CG33057 2008-08-15 Release 5.9 accounting
CG33057 2008-12-18 5.12 accounting

Clone Sequence Records

GH08776.complete Sequence

3123 bp (3123 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060662.1

> GH08776.complete
CATCGCCACCTCTAATAGAAACGCAATTAAACATATTGCATTGTTTTGCG
TAAATAAAAGTAAGTTTCGCAGGCAATGGCCTCGAATCAGCAAATCAATA
CGCAGCTAAGCAAAAAGCTATCCTGGCTGTTGCGGCACGGTGCGAAAACG
GAGGGAATCACGATCCGTGCTGATGGATTTGTTAGCGTTCCCGATTTGCA
GAAGCACCCACGCTACTTGTGCTTCACCTTAGAAAAACTGAAGGAGATTG
CCGCCGCGGATGCCAAGCAACGATATACTCTTCGCTGGAATCCAGAACTC
GGAGTCCATGAGATTCGCGCCAATCAGGGACACTCATTGGCGGTGCTGGA
AGGCGAAGCTGGCGGTCTCGAGAATATTACCCATGTGAGCCAGGTACCCC
TGGCAGTTCATGGCACCTATTACAGACATTGGGGGGCAATTAGAAGCCAA
GGGCTAAGTAGGATGAACCGCAACCATGTGCACTTTGCATGCAGCGATGA
GACCAATTCCACTCTGAGTGGATTCCGCAGCGATTGCCAGATTTTGATAT
ATCTAAACGTGGAAAAGGTGCTGGCGGACGGCATACCCATCTATCGATCC
AGCAATAATGTACTGCTCTGTCCGGGAATTGAAGGCTTCATACATAGTTC
CTACTTTCAGCGTGTAGTGGACAAGAAAACGGGGCAACCCTTACAAATTG
ATCATTGTTATTGAATAGAATAAACCTGGCCGTTAAGCAGTAATTAAAAC
GATTTTTTACAGAAATGCCGGCCCCTGCCTCGGAATCAACTTCTCCGCCT
GGGGATGGTGACGGTAATCTTGTGCTTTGCATGGTATGCGCTGCTCCCTT
CCGGAGTATGCAGGATTGCCTTGCCCACGAGCTGATCAAGCACGCCAGCA
AGCCACAAAAGCAACTGCGACAGCGATTGAACGCCATTACCAAGCTATTT
AACAGCGCACAAAGCCAATCCGAGCGTCAAGAGCTGCGGGAGGCTCTCGA
ATGGTCCGAGTCCGGCGGGCACTTGTGCACCGTATTGAATTTCTTTGCTT
GTGATCTCGAAAATATGAAAACCTGCTTCGGGCACGTCCGGAACTGCATA
GAGAAGGAGATGAGGGGCAGGGTTAGGGTGTTCCCCTTTGGTTCACTGGT
TACGGGTTTAGCACTGAAGGGTAAGTGATCACCAGTACAAGAAAAGCACA
TAATCCGAATCCTTTTCCGCAGAGAGCGACATCGATTTGTTTCTGGAGCC
CAACGGCAACCAGCCACCATTGTTCCATAATCAGCTATACAACAAGACCT
CACACTTTTTACGAAGATCCAAATGCTTTGCGGATGTCTTCACCATTCGT
CATGCCAGCGTGCCCATCATTAGATGTAAGCATCAGCTCACCGGACTCAA
CATAGACATCAATATGTCAAATCCGAATAGCATATATAACTCCCGATTTG
TGGGCGAACTGATGTTTCGCAATGAGCGGATACGCGAGCTCTGCCTGTTT
TTGAAAATTTGGGCCAAGAAGCTAAAATTGATTAGTCATGGCGGCATGAC
AAGCTATTGCTTAATATCCTTGATCATCGTTAACTTGCAAGTGAATCGAC
TAGTGCCCTCCGTCAAAGAGCTCCAGTCACTCTGTCCACCGGTTATTTTG
TCGGGCGTTAACTATGCCTACAGCCTGGACCTAACGCCGCCGATCCCAGC
ACGGCTCACCACGCTGGATTTACTTAAAAACTTCTTCATATACTACTGCA
CTGTCAACTTTGACAAAAGTGTATTGAGTCCGTTTCTGGGCGGCTGTGTG
GACAAGGAGACAACACTGGGCATGCCGGGAGGTTTTCCCGAGTACGATGA
GCAACAAAAGCTCGTGCATGATGCAATAGGTGCGCCGCCAGACGCTTTCC
AGCTGGATAGGGCCATGTGCGTACAGGATCCCTTCGAGCTCAGTCGCAAC
GTGGCCAAATCAGTGTCCATTTCAAATTTATGTTACTTTAGACAATGCCT
AGTCCTGGCAGCTCAAGCGTGCAGCGATCAGGAACTAACTTCGCAACCAG
AGAAGCTATACGACTACCTATTATTTGGCCTGGCGGATAAGTTAGTAGCC
GACAAAATAGTGGCAGATAAAAGATCAGAAAGGGCTACGCCGCGAAAGCA
ACAAAAAATTGAAAACGCCCATGTGCAACCGCCAATCGTCGATGAGACAC
AAGAAACAAAAGTCGCCGAAGTCGGAGTTTGTGGGACACCGCCCTTAGTG
CGATCACACGTCATCACGCCCACCACAAACGATGTCAAATGCCTGCGCTC
CATTGTGCTGGTCAAGAACACGGAGAACGATCAGAGCATATATTACTACT
GGTTGATCTGCTACGTGGACACTATAAAGGATGTGCTAACTCAACTGTAT
GCTTTGAATGTGGAACTTAAAGAATCGAAGGAGCCGAAACACTACAAGTG
GCTAATCAGCATTTCTTACGACACTTGGACAGGACGCTCTTTCCAACGTG
GCGCCGGTCAATCTTTCTTCGCCCACCAGTTGCAGCAGACGATTGAGTTT
ACGAAGACGAGAATGGGAAATCCGCAGTACGCAGTCAATTTGCGCGGCTA
TTTCACGCTGCAGGCCAGCGAGGATTACAAAGAGTTGCGCCTGGATGTGC
AGCCTCTTCAAGGAGATCTCCTCGGACTGCAGCGCAATAGTCCGCTAACA
AGGCTTTTTAAGGCGTTTAAGAATCTCCTGGGCAACTATAGTTTCAAAGA
GAAGGTCAGCACCTGGAAGTTTTGCGCCACAACTGACCAAATATGAATAT
CAACATGTCATGCTTTATGTACATACTTTTTGAATTCAATGGCAAATTGA
AAACACACCTTAATGACATTATTAACATTATTTTATTTGAATGTACAATA
TCACTATAGGCTAAACTAATACCTTAAATTATAAGTGTAACGACGACTAA
TCATATGTAAAGTTGACTAAACGATTTCTTGGCAAAAGTCTCTTGGAGCA
GGGAGAAATTATTTACAAGGGCGACAACAAAGCTTATCTAAATCATTTAC
AAGTGTGTGTCTGAAACTCCCCAAGAATAATAAAGAGGTTATAATTGTGT
AAAGTAAAAAAAAAAAAAAAAAA

GH08776.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33057-RA 3106 CG33057-RA 1..3106 1..3106 15530 100 Plus
mkg-p-RA 2211 mkg-p-RA 467..2211 1222..2966 8725 100 Plus
mkg-p-RB 2198 mkg-p-RB 454..2198 1222..2966 8725 100 Plus
mkg-p-RB 2198 mkg-p-RB 1..454 717..1170 2270 100 Plus
mkg-p-RA 2211 mkg-p-RA 60..467 763..1170 2040 100 Plus
mkg-p-RA 2211 mkg-p-RA 1..59 1..59 295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8394185..8397286 3105..1 15220 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8402166..8405272 3107..1 15535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8395266..8398372 3107..1 15535 100 Minus
Blast to na_te.dros performed 2019-03-16 08:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3051..3165 2829..2940 135 60 Plus

GH08776.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:16:17 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8394185..8397286 1..3105 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:28:23 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 1..405 765..1169 100 == Plus
mkg-p-RB 406..1980 1222..2796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:00 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 1..405 765..1169 100 == Plus
mkg-p-RB 406..1980 1222..2796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:42:23 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RA 1..405 765..1169 100 == Plus
mkg-p-RA 406..1980 1222..2796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:03 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RB 1..405 765..1169 100 == Plus
mkg-p-RB 406..1980 1222..2796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:37:44 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
mkg-p-RA 1..405 765..1169 100 == Plus
mkg-p-RA 406..1980 1222..2796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-27 15:32:30 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
CG33057-RA 1..3105 1..3105 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:00 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
CG33057-RA 1..3105 1..3105 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:42:23 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
CG33057-RA 6..3110 1..3105 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:04 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
CG33057-RA 1..3105 1..3105 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:37:44 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
CG33057-RA 6..3110 1..3105 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:17 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8402168..8405272 1..3105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:17 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8402168..8405272 1..3105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:17 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8402168..8405272 1..3105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:42:23 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8395268..8398372 1..3105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:14 Download gff for GH08776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8395268..8398372 1..3105 100   Minus

GH08776.pep Sequence

Translation from 75 to 713

> GH08776.pep
MASNQQINTQLSKKLSWLLRHGAKTEGITIRADGFVSVPDLQKHPRYLCF
TLEKLKEIAAADAKQRYTLRWNPELGVHEIRANQGHSLAVLEGEAGGLEN
ITHVSQVPLAVHGTYYRHWGAIRSQGLSRMNRNHVHFACSDETNSTLSGF
RSDCQILIYLNVEKVLADGIPIYRSSNNVLLCPGIEGFIHSSYFQRVVDK
KTGQPLQIDHCY*

GH08776.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20109-PA 207 GF20109-PA 1..206 1..206 776 67.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15085-PA 208 GG15085-PA 1..206 1..206 974 87.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16409-PA 211 GH16409-PA 7..209 8..206 602 56.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33057-PB 212 CG33057-PB 1..212 1..212 1123 100 Plus
CG33057-PA 212 CG33057-PA 1..212 1..212 1123 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12490-PA 210 GI12490-PA 1..208 1..206 646 59.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22571-PA 206 GA22571-PA 1..204 1..206 714 64.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24941-PA 212 GM24941-PA 1..212 1..212 1073 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12992-PA 212 GD12992-PA 1..212 1..212 1091 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12394-PA 209 GJ12394-PA 7..208 8..206 601 55.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21308-PA 208 GE21308-PA 1..206 1..206 978 87.9 Plus

GH08776.hyp Sequence

Translation from 1413 to 2795

> GH08776.hyp
MSNPNSIYNSRFVGELMFRNERIRELCLFLKIWAKKLKLISHGGMTSYCL
ISLIIVNLQVNRLVPSVKELQSLCPPVILSGVNYAYSLDLTPPIPARLTT
LDLLKNFFIYYCTVNFDKSVLSPFLGGCVDKETTLGMPGGFPEYDEQQKL
VHDAIGAPPDAFQLDRAMCVQDPFELSRNVAKSVSISNLCYFRQCLVLAA
QACSDQELTSQPEKLYDYLLFGLADKLVADKIVADKRSERATPRKQQKIE
NAHVQPPIVDETQETKVAEVGVCGTPPLVRSHVITPTTNDVKCLRSIVLV
KNTENDQSIYYYWLICYVDTIKDVLTQLYALNVELKESKEPKHYKWLISI
SYDTWTGRSFQRGAGQSFFAHQLQQTIEFTKTRMGNPQYAVNLRGYFTLQ
ASEDYKELRLDVQPLQGDLLGLQRNSPLTRLFKAFKNLLGNYSFKEKVST
WKFCATTDQI*

GH08776.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
mkg-p-PD 659 CG7163-PD 200..659 1..460 2409 100 Plus
mkg-p-PB 659 CG7163-PB 200..659 1..460 2409 100 Plus
mkg-p-PA 659 CG7163-PA 200..659 1..460 2409 100 Plus