Clone GH08894 Report

Search the DGRC for GH08894

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:88
Well:94
Vector:pOT2
Associated Gene/TranscriptCG11334-RA
Protein status:GH08894.pep: gold
Preliminary Size:1571
Sequenced Size:1455

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11334 2001-01-01 Release 2 assignment
CG11334 2001-10-10 Blastp of sequenced clone
CG11334 2003-01-01 Sim4 clustering to Release 3
CG11334 2008-04-29 Release 5.5 accounting
CG11334 2008-08-15 Release 5.9 accounting
CG11334 2008-12-18 5.12 accounting

Clone Sequence Records

GH08894.complete Sequence

1455 bp (1455 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060664

> GH08894.complete
CCTGGCAGTCGTTGTTAGGGAGCGTTTAAAGCTACGAATTTCAAACCGAA
ACCGAAACTGAAACTGATCGCCTTCGATTAATAACTGATTAGTTGGCAGC
GATTCGCCCACTAGTGGTCCAATTTCAGCACAATCCCCTGGAGAGATGAG
CCTGCAGTCGATCAAGTACTCGCGGGGCAGCCTGGAGATCCTCGACCAGC
TGCTCCTGCCCGGTCAGTCAAAGTACGTGGTGGTGCGAGGAGTGGAGGAT
GGCTGGAAGGTCATCAACAAGATGCAGGTGCGTGGTGCTCCGGCCATCGC
TATCGTTGGCTGCCTCTCCCTGGCCGTGGAAATCAACCCGGAGGATTTTG
AGAACAAGAAATCACTGCGGCAGGAGATTGAGGGAAAGTTGAACTATTTG
GTTTCCGCCAGGCCTACGGCGGTCAACATGAAGATCGCAGCCGACGAGCT
CATCACCCTGGCCAACGAACTTTACAAGGACGAGGCAATCGACGTGACCC
AAATGAAGCATAGATTTCTGGACGCGACCGAAGCTATGCTAAAAAAAGAC
ATTGCCGATAACCGTGCCATTGGAGCGAATGGAGCCCAGGCGATCCTACA
GGGCGTGGCGAAGGCAGGTAAAGCGCCCGCTGGATCGACGGGATCCGTCC
GGGTGCTTACCCACTGCAACACGGGTTCCCTGGCCACCGCCGGGTACGGT
ACAGCTCTGGGAGTGGTCCGCCAACTGGCCGAGCTGGGAAAACTGGAGCA
CGTTTATTGCACAGAGACTCGTCCTTACAATCAGGGAGCCCGCCTCACAG
CCTACGAACTGGTCCACGAGAAATTCCCCGCCACTCTGGTTCTGGATAGC
ATGGTGGCGGCTCTGCTGCGGGCCAAAAATGTGGCTGCTGTGGTTGTAGG
AGCAGATCGTGTGGCCTCCAATGGCGACACGGCCAACAAGATTGGTACCT
ACCAGATTGCCGTGGTTGCCAAGCACCACGACGTGCCATTTTACGTAGCC
GCCCCTCTGACTTCCATCGATCTAGCGATTCCCGGAGGCGATCACATCAT
CATTGAGGAGCGTCCCGACCGGGAAATGACGCACGTGGGAGAGCACCGCA
TCGCTGCCCCGGGCATTAACTGCTGGAACCCCGCCTTCGATGTGACCCCT
GCCTCTCTGATCACAGGCATCATCACGGAACGCGGTGTCTTCAAGCCGGC
GGAACTGAAAGAGGCCATCACTAAGTTGCTAGAGTCCTAACCGGCGCACA
GAAGTAGTTTACACATGCACTCCATACCCCCAAAAAAAGAAACCGCAGAA
ACCAGAGCACGCGCGCTCGGAATAGGCATTTTGCCAGCTGAGTTTTGTAT
ACAAACGTTTTCCCGCCTGCCAAGCAGATGTGGGTCGATCCGTTGGGAAG
CACAACGCACAATATACCTCCTACACATGTAAAAAAAAAAAAAAAAAAAA
AAAAA

GH08894.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-RB 1452 CG11334-RB 23..1452 1..1430 7150 100 Plus
CG11334-RA 1487 CG11334-RA 180..1487 123..1430 6540 100 Plus
lox.a 1855 lox.a 1..451 981..1431 2255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27282148..27282670 1430..911 2535 99.4 Minus
chr3R 27901430 chr3R 27283250..27283487 513..276 1190 100 Minus
chr3R 27901430 chr3R 27282959..27283193 746..512 1130 98.7 Minus
chr3R 27901430 chr3R 27282727..27282893 912..746 835 100 Minus
chr3R 27901430 chr3R 27284140..27284302 280..118 800 99.4 Minus
chr3R 27901430 chr3R 27284364..27284485 122..1 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31459821..31460341 1431..911 2605 100 Minus
3R 32079331 3R 31460921..31461158 513..276 1190 100 Minus
3R 32079331 3R 31460630..31460864 746..512 1175 100 Minus
3R 32079331 3R 31460398..31460564 912..746 835 100 Minus
3R 32079331 3R 31461811..31461973 280..118 800 99.4 Minus
3R 32079331 3R 31462035..31462156 122..1 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31200652..31201172 1431..911 2605 100 Minus
3R 31820162 3R 31201752..31201989 513..276 1190 100 Minus
3R 31820162 3R 31201461..31201695 746..512 1175 100 Minus
3R 31820162 3R 31201229..31201395 912..746 835 100 Minus
3R 31820162 3R 31202642..31202804 280..118 800 99.3 Minus
3R 31820162 3R 31202866..31202987 122..1 610 100 Minus
Blast to na_te.dros performed 2019-03-16 03:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3833..3877 461..417 117 73.3 Minus

GH08894.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:23:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27284364..27284485 1..122 100   Minus
chr3R 27282148..27282670 911..1430 99 <- Minus
chr3R 27282729..27282892 747..910 100 <- Minus
chr3R 27282959..27283191 514..746 98 <- Minus
chr3R 27283250..27283485 278..513 100 <- Minus
chr3R 27284143..27284297 123..277 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:00 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 1..1095 146..1240 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:04 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 1..1095 146..1240 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 1..1095 146..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:10 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 1..1095 146..1240 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:48 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RA 1..1095 146..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:43 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 1..1428 1..1428 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:04 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 23..1452 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 23..1452 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:10 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 1..1428 1..1428 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:48 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
CG11334-RB 23..1452 1..1430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31461814..31461968 123..277 100 <- Minus
3R 31462035..31462156 1..122 100   Minus
3R 31460630..31460862 514..746 100 <- Minus
3R 31460921..31461156 278..513 100 <- Minus
3R 31459822..31460341 911..1430 100 <- Minus
3R 31460400..31460563 747..910 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31461814..31461968 123..277 100 <- Minus
3R 31462035..31462156 1..122 100   Minus
3R 31460630..31460862 514..746 100 <- Minus
3R 31460921..31461156 278..513 100 <- Minus
3R 31459822..31460341 911..1430 100 <- Minus
3R 31460400..31460563 747..910 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31461814..31461968 123..277 100 <- Minus
3R 31462035..31462156 1..122 100   Minus
3R 31460630..31460862 514..746 100 <- Minus
3R 31460921..31461156 278..513 100 <- Minus
3R 31459822..31460341 911..1430 100 <- Minus
3R 31460400..31460563 747..910 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:07 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27285544..27286063 911..1430 100 <- Minus
arm_3R 27286122..27286285 747..910 100 <- Minus
arm_3R 27286352..27286584 514..746 100 <- Minus
arm_3R 27286643..27286878 278..513 100 <- Minus
arm_3R 27287536..27287690 123..277 100 <- Minus
arm_3R 27287757..27287878 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:19 Download gff for GH08894.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31201231..31201394 747..910 100 <- Minus
3R 31201461..31201693 514..746 100 <- Minus
3R 31200653..31201172 911..1430 100 <- Minus
3R 31201752..31201987 278..513 100 <- Minus
3R 31202645..31202799 123..277 100 <- Minus
3R 31202866..31202987 1..122 100   Minus

GH08894.pep Sequence

Translation from 145 to 1239

> GH08894.pep
MSLQSIKYSRGSLEILDQLLLPGQSKYVVVRGVEDGWKVINKMQVRGAPA
IAIVGCLSLAVEINPEDFENKKSLRQEIEGKLNYLVSARPTAVNMKIAAD
ELITLANELYKDEAIDVTQMKHRFLDATEAMLKKDIADNRAIGANGAQAI
LQGVAKAGKAPAGSTGSVRVLTHCNTGSLATAGYGTALGVVRQLAELGKL
EHVYCTETRPYNQGARLTAYELVHEKFPATLVLDSMVAALLRAKNVAAVV
VGADRVASNGDTANKIGTYQIAVVAKHHDVPFYVAAPLTSIDLAIPGGDH
IIIEERPDREMTHVGEHRIAAPGINCWNPAFDVTPASLITGIITERGVFK
PAELKEAITKLLES*

GH08894.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17194-PA 364 GF17194-PA 1..364 1..364 1734 90.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11866-PA 364 GG11866-PA 1..364 1..364 1855 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21593-PA 363 GH21593-PA 1..362 1..363 1649 86.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-PC 364 CG11334-PC 1..364 1..364 1835 100 Plus
CG11334-PB 364 CG11334-PB 1..364 1..364 1835 100 Plus
CG11334-PA 364 CG11334-PA 1..364 1..364 1835 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10562-PA 362 GI10562-PA 1..361 1..363 1649 87.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27236-PA 362 GL27236-PA 1..362 1..364 1672 87.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10928-PA 362 GA10928-PA 1..362 1..364 1673 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12085-PA 364 GM12085-PA 1..364 1..364 1900 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16414-PA 364 GD16414-PA 1..364 1..364 1906 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22917-PA 362 GJ22917-PA 1..361 1..363 1624 86.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22419-PA 365 GK22419-PA 1..363 1..362 1692 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23315-PA 364 GE23315-PA 1..364 1..364 1867 97 Plus

GH08894.hyp Sequence

Translation from 145 to 1239

> GH08894.hyp
MSLQSIKYSRGSLEILDQLLLPGQSKYVVVRGVEDGWKVINKMQVRGAPA
IAIVGCLSLAVEINPEDFENKKSLRQEIEGKLNYLVSARPTAVNMKIAAD
ELITLANELYKDEAIDVTQMKHRFLDATEAMLKKDIADNRAIGANGAQAI
LQGVAKAGKAPAGSTGSVRVLTHCNTGSLATAGYGTALGVVRQLAELGKL
EHVYCTETRPYNQGARLTAYELVHEKFPATLVLDSMVAALLRAKNVAAVV
VGADRVASNGDTANKIGTYQIAVVAKHHDVPFYVAAPLTSIDLAIPGGDH
IIIEERPDREMTHVGEHRIAAPGINCWNPAFDVTPASLITGIITERGVFK
PAELKEAITKLLES*

GH08894.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11334-PC 364 CG11334-PC 1..364 1..364 1835 100 Plus
CG11334-PB 364 CG11334-PB 1..364 1..364 1835 100 Plus
CG11334-PA 364 CG11334-PA 1..364 1..364 1835 100 Plus