Clone GH08941 Report

Search the DGRC for GH08941

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:89
Well:41
Vector:pOT2
Associated Gene/Transcriptqsm-RA
Protein status:GH08941.pep: gold
Preliminary Size:1876
Sequenced Size:1812

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13432 2001-01-01 Release 2 assignment
CG13433 2001-01-01 Release 2 assignment
CG13432 2001-09-19 Blastp of sequenced clone
CG13432 2003-01-01 Sim4 clustering to Release 3
l(2)05510 2008-04-29 Release 5.5 accounting
l(2)05510 2008-08-15 Release 5.9 accounting
l(2)05510 2008-12-18 5.12 accounting

Clone Sequence Records

GH08941.complete Sequence

1812 bp (1812 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058320

> GH08941.complete
AACAGCTTGGACGTGTGGTGTGCTCTTCGGTGTGGTTTCGAGTCTCGAGT
TCCGAGTTTTCCCCATATTGCAGCCGTCAAATCCGGAAATTTTGGAAAAT
GCTGCTCTCAATGCAAATGTGGCGCTCTCTGTGGCTGGCGGCCCTATTCT
GCGGATTAGCCCAGGCCAAAGGTTCCCACAAGGTGCACTGTTCGGAGGAT
CAGATGAGGGTTGACATCGGACTGCCGGATGCGGAGTCAAAGGATCAGAG
TGCTCCTCAGATCTATTTGGAGGGATTGAAGGGATATCCGGATGAACGAT
GCCAGCCGCAAATCGATGGATCCCTGGCCGTTTTTCGGCTTTCACTCAGC
GATTTTTACGAGTGCGGAGTAACTCGAATGGTCAACCAGCTAACGGGCAA
GAAGGTGTATTACCATAAAATCATCATCGAGTCAACCAGCGGCAAGGAGA
TCGTCAGCGTTAAGTGCATCACCACCGCCAGTCCCGCCTATAATGTGATG
ATGAATGCCACCACCGGGTCCAGTTCCACGTCCACTTCCAGCGGCGGCAT
CCACGGCCTGGTCAAGCGGGATGTGCTGCCGGCGGGATTCCAGGAACCCG
AGGATCTGGAGATCACCACATCGCTGACCAAGCGGGCCCCGGAGCCACGA
CTCTCAATTGGCGTTAGCCAGGATGGTCAGAAGTTCACCAGGGATTTGAC
TGTCAAGTCGGGCACACCTTTGACAATGGAAATCAATCTGGATGAGGACT
CTGCACCTGTTTATGGTCTGGGTGTCAACTATTTGGATGTGACGGATACG
CATACGTCATCGGAAACGTTGATCTTCAAGGGCTGCACAGTGGATCCCTA
TCTCTTCGAGAACTTCAACACCATTGATGGCGACATTTTGAGTGCCAAGT
TCAAGGCCTTCAAGTTCCCCGACTCGTCGTACGTGCAATTCCGTGCCACG
GTCAACGTGTGTTTGGACAAGTGCCTCGGCACCCAGTGCTCCAACAACCA
GGTGGGCTTCGGTCGACGCAAGCGAGAGATCAGCTCAGCGAACAAGGTCT
ACGAGATCTCGCTGGCCATGTTCCTGCAGGTTCAGGATATCGAGGGTGTC
AACAAGAATGAGGTCCTGCAGCTGGAGGAGAAGCTTAGGGAGCTGAAGCT
GGCCAACCAGCGCTTGGCCAGGAATAGTCGCGGCAACTTTGCCATGGAGC
AGACGCCCGCCAGTGCTCAGCCCGCCTTTGTCGTGGACGAGCGGGAGCTG
GGACATCTCAGTGCCGGATCGGGAGCCGCATCGAACGGCCTGTCGCTGGC
TCTCTGGACGATTCTGGGGGCATGGAGTTGGCGGCTGATGTAGAAGTTGT
AAATCTCTCAAGGCGTGAACGACGTGCGAGTGCGAGGAATGCTAATCAGG
GCGGAATTGCGTGCAGTGGCAATGAACGAAGGAGGGAATATTAATGTACT
ACCTAACTACTAAAATATACCTATACTTGATGTAACTGCCATTTACGGAA
CGTAATTAACTTTAAATGTATGCATAGCGTAGGTTTTCAACGACTTATGG
CAGCAGACATTGCGACAGAAACAGAAACAGAAACAGACAGACAACAGTGA
TTCTTATAAAAATACACAAAAAACACTTACATATAAATATATAAATATGC
ATATATATATATATATATTGGAGAACTTGAAGAACTCGGTCTAACTCATA
AGCACCTACTAGTCTCCTAAGTGTAACTGTTAAGCTAATTTAATTAACGC
GTAAACTAAACGAATTAATTGATTAAACGAAACTCTGATCTAAGAAAAAA
AAAAAAAAAAAA

GH08941.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)05510-RA 1935 l(2)05510-RA 95..1888 1..1794 8970 100 Plus
l(2)05510.a 1782 l(2)05510.a 70..1782 81..1793 8565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16449802..16450488 1794..1108 3435 100 Minus
chr2R 21145070 chr2R 16450557..16450837 1112..832 1390 99.6 Minus
chr2R 21145070 chr2R 16452044..16452270 396..170 1075 98.2 Minus
chr2R 21145070 chr2R 16451768..16451975 602..395 1025 99.5 Minus
chr2R 21145070 chr2R 16450898..16451020 832..710 615 100 Minus
chr2R 21145070 chr2R 16451090..16451199 711..602 550 100 Minus
chr2R 21145070 chr2R 16468296..16468388 173..81 435 97.8 Minus
chr2R 21145070 chr2R 16468767..16468846 80..1 400 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20563034..20563720 1794..1108 3435 100 Minus
2R 25286936 2R 20563789..20564069 1112..832 1390 99.6 Minus
2R 25286936 2R 20565277..20565503 396..170 1135 100 Minus
2R 25286936 2R 20565000..20565207 602..395 1040 100 Minus
2R 25286936 2R 20564130..20564252 832..710 615 100 Minus
2R 25286936 2R 20564322..20564431 711..602 550 100 Minus
2R 25286936 2R 20581559..20581651 173..81 465 100 Minus
2R 25286936 2R 20582030..20582109 80..1 400 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20564233..20564919 1794..1108 3435 100 Minus
2R 25260384 2R 20564988..20565268 1112..832 1390 99.6 Minus
2R 25260384 2R 20566476..20566702 396..170 1135 100 Minus
2R 25260384 2R 20566199..20566406 602..395 1040 100 Minus
2R 25260384 2R 20565329..20565451 832..710 615 100 Minus
2R 25260384 2R 20565521..20565630 711..602 550 100 Minus
2R 25260384 2R 20582758..20582850 173..81 465 100 Minus
2R 25260384 2R 20583229..20583308 80..1 400 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:07:19 has no hits.

GH08941.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:08:05 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16449802..16450488 1108..1794 94 <- Minus
chr2R 16450562..16450836 833..1107 100 <- Minus
chr2R 16450898..16451019 711..832 100 <- Minus
chr2R 16451091..16451199 602..710 100 <- Minus
chr2R 16451769..16451974 396..601 99 <- Minus
chr2R 16452045..16452268 172..395 98 <- Minus
chr2R 16468298..16468388 81..171 97 <- Minus
chr2R 16468767..16468846 1..80 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:19:03 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)05510-RA 1..1245 99..1343 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:51 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)05510-RA 1..1245 99..1343 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:37:47 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
qsm-RA 1..1245 99..1343 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:43 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)05510-RA 1..1245 99..1343 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:52:15 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
qsm-RA 1..1245 99..1343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:19:03 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)05510-RA 20..1812 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:51 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)05510-RA 20..1812 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:37:47 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
qsm-RA 24..1817 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:43 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)05510-RA 20..1812 1..1793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:15 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
qsm-RA 24..1817 1..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:08:05 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20564323..20564431 602..710 100 <- Minus
2R 20565001..20565206 396..601 100 <- Minus
2R 20563034..20563720 1108..1794 100 <- Minus
2R 20563794..20564068 833..1107 100 <- Minus
2R 20564130..20564251 711..832 100 <- Minus
2R 20565278..20565501 172..395 100 <- Minus
2R 20581561..20581651 81..171 100 <- Minus
2R 20582030..20582109 1..80 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:08:05 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20564323..20564431 602..710 100 <- Minus
2R 20565001..20565206 396..601 100 <- Minus
2R 20563034..20563720 1108..1794 100 <- Minus
2R 20563794..20564068 833..1107 100 <- Minus
2R 20564130..20564251 711..832 100 <- Minus
2R 20565278..20565501 172..395 100 <- Minus
2R 20581561..20581651 81..171 100 <- Minus
2R 20582030..20582109 1..80 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:08:05 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20564323..20564431 602..710 100 <- Minus
2R 20565001..20565206 396..601 100 <- Minus
2R 20563034..20563720 1108..1794 100 <- Minus
2R 20563794..20564068 833..1107 100 <- Minus
2R 20564130..20564251 711..832 100 <- Minus
2R 20565278..20565501 172..395 100 <- Minus
2R 20581561..20581651 81..171 100 <- Minus
2R 20582030..20582109 1..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:37:47 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16450539..16451225 1108..1794 100 <- Minus
arm_2R 16451299..16451573 833..1107 100 <- Minus
arm_2R 16451635..16451756 711..832 100 <- Minus
arm_2R 16451828..16451936 602..710 100 <- Minus
arm_2R 16452506..16452711 396..601 100 <- Minus
arm_2R 16452783..16453006 172..395 100 <- Minus
arm_2R 16469066..16469156 81..171 100 <- Minus
arm_2R 16469535..16469614 1..80 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:11 Download gff for GH08941.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20566477..20566700 172..395 100 <- Minus
2R 20566200..20566405 396..601 100 <- Minus
2R 20582760..20582850 81..171 100 <- Minus
2R 20565329..20565450 711..832 100 <- Minus
2R 20565522..20565630 602..710 100 <- Minus
2R 20583229..20583308 1..80 100   Minus
2R 20564233..20564919 1108..1794 100 <- Minus
2R 20564993..20565267 833..1107 100 <- Minus

GH08941.hyp Sequence

Translation from 2 to 1342

> GH08941.hyp
QLGRVVCSSVWFRVSSSEFSPYCSRQIRKFWKMLLSMQMWRSLWLAALFC
GLAQAKGSHKVHCSEDQMRVDIGLPDAESKDQSAPQIYLEGLKGYPDERC
QPQIDGSLAVFRLSLSDFYECGVTRMVNQLTGKKVYYHKIIIESTSGKEI
VSVKCITTASPAYNVMMNATTGSSSTSTSSGGIHGLVKRDVLPAGFQEPE
DLEITTSLTKRAPEPRLSIGVSQDGQKFTRDLTVKSGTPLTMEINLDEDS
APVYGLGVNYLDVTDTHTSSETLIFKGCTVDPYLFENFNTIDGDILSAKF
KAFKFPDSSYVQFRATVNVCLDKCLGTQCSNNQVGFGRRKREISSANKVY
EISLAMFLQVQDIEGVNKNEVLQLEEKLRELKLANQRLARNSRGNFAMEQ
TPASAQPAFVVDERELGHLSAGSGAASNGLSLALWTILGAWSWRLM*

GH08941.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
qsm-PB 414 CG13432-PB 1..414 33..446 2134 100 Plus
qsm-PA 414 CG13432-PA 1..414 33..446 2134 100 Plus
nompA-PF 1306 CG13207-PF 810..1053 106..376 171 25.4 Plus
nompA-PD 1549 CG13207-PD 1061..1304 106..376 171 25.4 Plus
nompA-PC 1549 CG13207-PC 1061..1304 106..376 171 25.4 Plus

GH08941.pep Sequence

Translation from 98 to 1342

> GH08941.pep
MLLSMQMWRSLWLAALFCGLAQAKGSHKVHCSEDQMRVDIGLPDAESKDQ
SAPQIYLEGLKGYPDERCQPQIDGSLAVFRLSLSDFYECGVTRMVNQLTG
KKVYYHKIIIESTSGKEIVSVKCITTASPAYNVMMNATTGSSSTSTSSGG
IHGLVKRDVLPAGFQEPEDLEITTSLTKRAPEPRLSIGVSQDGQKFTRDL
TVKSGTPLTMEINLDEDSAPVYGLGVNYLDVTDTHTSSETLIFKGCTVDP
YLFENFNTIDGDILSAKFKAFKFPDSSYVQFRATVNVCLDKCLGTQCSNN
QVGFGRRKREISSANKVYEISLAMFLQVQDIEGVNKNEVLQLEEKLRELK
LANQRLARNSRGNFAMEQTPASAQPAFVVDERELGHLSAGSGAASNGLSL
ALWTILGAWSWRLM*

GH08941.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12759-PA 612 GF12759-PA 1..381 1..384 1889 91.8 Plus
Dana\GF18555-PA 770 GF18555-PA 529..678 190..331 169 32 Plus
Dana\GF12409-PA 1608 GF12409-PA 1029..1325 31..369 166 23.6 Plus
Dana\GF18669-PA 757 GF18669-PA 488..652 148..313 160 28.1 Plus
Dana\GF18556-PA 805 GF18556-PA 403..734 61..409 157 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20849-PA 415 GG20849-PA 1..415 1..414 2143 96.9 Plus
Dere\GG22667-PA 1602 GG22667-PA 1043..1321 31..344 170 25.7 Plus
Dere\GG11810-PA 790 GG11810-PA 549..698 190..331 165 31.4 Plus
Dere\GG11699-PA 744 GG11699-PA 475..641 148..315 152 27.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22115-PA 433 GH22115-PA 8..433 5..414 1791 80.9 Plus
Dgri\GH19340-PA 768 GH19340-PA 530..695 190..347 166 29 Plus
Dgri\GH19351-PA 817 GH19351-PA 418..688 61..347 161 26.8 Plus
Dgri\GH19913-PA 1545 GH19913-PA 1034..1286 31..311 161 25.9 Plus
Dgri\GH24267-PA 738 GH24267-PA 504..652 164..316 154 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
qsm-PB 414 CG13432-PB 1..414 1..414 2134 100 Plus
qsm-PA 414 CG13432-PA 1..414 1..414 2134 100 Plus
nompA-PF 1306 CG13207-PF 810..1053 74..344 171 25.4 Plus
nompA-PD 1549 CG13207-PD 1061..1304 74..344 171 25.4 Plus
nompA-PC 1549 CG13207-PC 1061..1304 74..344 171 25.4 Plus
nompA-PB 1557 CG13207-PB 1061..1304 74..344 171 25.4 Plus
nompA-PA 1557 CG13207-PA 1061..1304 74..344 171 25.4 Plus
mey-PB 774 CG12063-PB 533..682 190..331 160 29.4 Plus
mey-PA 774 CG12063-PA 533..682 190..331 160 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19250-PA 426 GI19250-PA 1..426 1..414 1796 81 Plus
Dmoj\GI19870-PA 1504 GI19870-PA 1033..1263 74..324 170 26.3 Plus
Dmoj\GI22208-PA 935 GI22208-PA 699..848 190..331 164 31.4 Plus
Dmoj\GI22209-PA 818 GI22209-PA 415..649 61..311 159 28.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17441-PA 421 GL17441-PA 7..421 4..414 1934 90.9 Plus
Dper\GL27255-PA 252 GL27255-PA 5..147 190..324 166 32.2 Plus
Dper\GL17345-PA 1614 GL17345-PA 1047..1319 31..312 163 25.4 Plus
Dper\GL14072-PA 753 GL14072-PA 413..681 61..336 155 24.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12284-PA 421 GA12284-PA 7..421 4..414 1942 90.9 Plus
Dpse\GA26780-PA 800 GA26780-PA 553..695 190..324 163 32.2 Plus
Dpse\GA24220-PE 1563 GA24220-PE 1033..1286 31..312 161 25.8 Plus
Dpse\GA24220-PD 1596 GA24220-PD 1033..1286 31..312 161 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19777-PA 414 GM19777-PA 1..414 1..414 2216 99.5 Plus
Dsec\GM12947-PA 780 GM12947-PA 539..688 190..331 164 31.4 Plus
Dsec\GM12828-PA 739 GM12828-PA 470..636 148..315 153 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25268-PA 412 GD25268-PA 1..412 1..414 2199 99.3 Plus
Dsim\GD25914-PA 1372 GD25914-PA 1026..1304 31..344 167 25.7 Plus
Dsim\GD21581-PA 780 GD21581-PA 539..688 190..331 165 31.4 Plus
Dsim\GD21471-PA 744 GD21471-PA 475..641 148..315 153 26.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20328-PA 425 GJ20328-PA 1..425 1..414 1817 81.1 Plus
Dvir\GJ19005-PA 1538 GJ19005-PA 1016..1269 31..312 165 26.1 Plus
Dvir\GJ24329-PA 749 GJ24329-PA 513..662 190..331 163 31.4 Plus
Dvir\GJ24330-PA 809 GJ24330-PA 407..641 61..311 157 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21832-PA 415 GK21832-PA 6..415 5..414 1776 84.7 Plus
Dwil\GK22105-PA 1531 GK22105-PA 1054..1292 74..336 174 26.2 Plus
Dwil\GK13522-PA 753 GK13522-PA 516..665 190..331 160 31.4 Plus
Dwil\GK11653-PA 765 GK11653-PA 427..711 61..354 155 25.6 Plus
Dwil\GK13524-PA 805 GK13524-PA 408..670 61..340 155 27.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13788-PA 412 GE13788-PA 1..412 1..414 2151 96.6 Plus
Dyak\GE13023-PA 1553 GE13023-PA 1030..1308 31..344 168 25.7 Plus
Dyak\GE10944-PA 783 GE10944-PA 542..691 190..331 164 31.4 Plus
Dyak\GE23889-PA 745 GE23889-PA 471..642 143..315 155 25.9 Plus
Dyak\GE10945-PA 829 GE10945-PA 405..667 61..340 151 27.1 Plus