Clone GH08974 Report

Search the DGRC for GH08974

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:89
Well:74
Vector:pOT2
Associated Gene/TranscriptCG6950-RA
Protein status:GH08974.pep: gold
Preliminary Size:1300
Sequenced Size:1584

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6950 2001-01-01 Release 2 assignment
CG6950 2002-03-28 Blastp of sequenced clone
CG6950 2003-01-01 Sim4 clustering to Release 3
CG6950 2008-04-29 Release 5.5 accounting
CG6950 2008-08-15 Release 5.9 accounting
CG6950 2008-12-18 5.12 accounting

Clone Sequence Records

GH08974.complete Sequence

1584 bp (1584 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094691

> GH08974.complete
CAGCATTTAACTCAACAATTGCATTTAAAAGTAAACCAGTGATATAGTTT
ATTGTTACATTTGAGATCAGACATCAGACCCGCAGAGACGACAGGCAAAG
TGCGTGCTTATCGCGCAATAAACAATCCAGACACGCGGTGATAAGGCGAA
AGGGAGCGATCATTCACTAAAGTCACCTTTTTACAGATGCTACGCAGCTG
TCAGTTAACCCTCTCCGCCGCTAAGAGGAGCCTTCGCGAGCAGTTCCAGT
TGCAAGCCCTTCGTCACCAGCAGACTGCCATTAAAATGGAGAAATTCGAT
CTGCCCAAGCGATTGCAGGGTAGCACGCCCAGCGTCTGGAACGAGTACAT
TGCCCTGGCCATGCAATATAAGCCCCTGAACTTGGGACAGGGATTTCCCG
ATGATGCCGCTCCCGAGTACGTGACCCACTCGTTGGCCGACATTGCCAAG
GAGCAGAATCCTCTTCTGCATCAGTACACTCGCGGTTACGGTCACGTTCG
CCTGGTCAATGCGCTATCCAAGCTCTATAGCGGTCTCGTCGGCAAGGAGC
TAAATCCCCTCAGCGACATACTGATTACCTCAGGCGCCTATGAGGCTCTC
TACTCCACCATCATGGGCCATGTGGACGTGGGCGACGAGGTGATCATTAT
TGAACCATTCTTTGATTGCTACGAGCCTATGGTCAAGATGGCCGGTGGAG
TGCCCCGCTTTGTTCCCCTAAAATTGCGCAAGACAGAGGGACCAATAAGC
TCTGCCGATTGGGTGCTAGATGACGCTGAGTTCGAGAGTCTGTTCAACTC
TAAAACAAAGATGATTATCCTAAACACGCCCCACAACCCTATTGGAAAGG
TCTTCAACCGGAAAGAGCTAGAGAGGATAGCCGAGCTCTGCCGCAAGTGG
AATGTGCTGTGCGTCTCGGACGAGGTGTATGAGTGGTTGGTGTTCGACGG
AGCCGAGCACATCCGTATCTGCACGCTGCCGGGCATGTGGGATCGCACCA
TTACTCTGGGATCAGCGGGCAAGACCTTCTCAGTAACTGGTTGGAAAATA
GGCTGGGCCTACGGACCCGCTGAACTGATTCGAAACCTGCAGATGGTGCA
TCAGAACTCTGTGTACACCTGTCCAACGCCGCTCCAGGAGGGCGTCGCAC
GCAGTTTCGAGGTAGAACTGGCCCGTTTGGGTCAGCCGGAGAGCTACTTC
CTTAGCCTGCCGCGCGAGCTGAAGCAGAAGCGTGACTTCATGGCCAAGTT
CCTGTCCGAATCCGGTATGCGTCCCACCATTCCTGAGGGTGGCTACTTTA
TGCTGGCAGACTGGTCACCACTGGCGGGCAAGATTGATCTAAGCTCTGAG
CCAGACAAGCATCGGGATTACAAGTTTACCAAGTGGATGACCAAGAACAT
GGGCTTGCAGGGCATACCGCCAAGTGCCTTCTACAGCGAACCCAACAAAC
ATCTGGGGGAGGACTTTGTGCGCTACTGCTTCATCAAGAAGCAAGAGAAC
CTGGATAAGGCGGCCGAACTGCTGTCCAAATGGAAATAGTCGCCGGACAA
TAAACGAATTGCTATCAAAAAAAAAAAAAAAAAA

GH08974.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-RB 1675 CG6950-RB 107..1673 1..1567 7835 100 Plus
CG6950.b 1560 CG6950.b 137..1558 146..1567 7110 100 Plus
CG6950-RA 1668 CG6950-RA 286..1666 187..1567 6905 100 Plus
CG6950-RA 1668 CG6950-RA 187..289 1..103 500 99 Plus
CG6950.b 1560 CG6950.b 107..137 1..31 155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7645903..7646743 1566..726 4175 99.8 Minus
chr3R 27901430 chr3R 7646798..7647523 726..1 3600 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11820380..11821221 1567..726 4210 100 Minus
3R 32079331 3R 11821280..11822005 726..1 3630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11561211..11562052 1567..726 4210 100 Minus
3R 31820162 3R 11562111..11562836 726..1 3630 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:21:30 has no hits.

GH08974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:22:36 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7645903..7646742 727..1566 99 <- Minus
chr3R 7646798..7647523 1..726 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:17 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1353 187..1539 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:22:01 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1353 187..1539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:38 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 1..1353 187..1539 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:58:56 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1353 187..1539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:23 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RA 1..1353 187..1539 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:49:01 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1563 4..1566 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:22:01 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1563 4..1566 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:38 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 73..1638 1..1566 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:58:57 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 1..1563 4..1566 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:23 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
CG6950-RB 73..1638 1..1566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:36 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11820381..11821220 727..1566 100 <- Minus
3R 11821280..11822005 1..726 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:36 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11820381..11821220 727..1566 100 <- Minus
3R 11821280..11822005 1..726 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:36 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11820381..11821220 727..1566 100 <- Minus
3R 11821280..11822005 1..726 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:38 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7646103..7646942 727..1566 100 <- Minus
arm_3R 7647002..7647727 1..726 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:31:37 Download gff for GH08974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11561212..11562051 727..1566 100 <- Minus
3R 11562111..11562836 1..726 100   Minus

GH08974.pep Sequence

Translation from 186 to 1538

> GH08974.pep
MLRSCQLTLSAAKRSLREQFQLQALRHQQTAIKMEKFDLPKRLQGSTPSV
WNEYIALAMQYKPLNLGQGFPDDAAPEYVTHSLADIAKEQNPLLHQYTRG
YGHVRLVNALSKLYSGLVGKELNPLSDILITSGAYEALYSTIMGHVDVGD
EVIIIEPFFDCYEPMVKMAGGVPRFVPLKLRKTEGPISSADWVLDDAEFE
SLFNSKTKMIILNTPHNPIGKVFNRKELERIAELCRKWNVLCVSDEVYEW
LVFDGAEHIRICTLPGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRN
LQMVHQNSVYTCPTPLQEGVARSFEVELARLGQPESYFLSLPRELKQKRD
FMAKFLSESGMRPTIPEGGYFMLADWSPLAGKIDLSSEPDKHRDYKFTKW
MTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFIKKQENLDKAAELLSKWK
*

GH08974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23062-PA 417 GF23062-PA 1..417 34..450 2134 93.3 Plus
Dana\GF22556-PA 502 GF22556-PA 121..451 63..415 239 24.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17186-PA 450 GG17186-PA 1..450 1..450 2394 98.2 Plus
Dere\GG17840-PA 508 GG17840-PA 126..456 63..415 232 23.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19404-PA 417 GH19404-PA 1..417 34..450 2041 89 Plus
Dgri\GH12929-PA 483 GH12929-PA 158..431 126..415 236 24.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-PD 450 CG6950-PD 1..450 1..450 2387 100 Plus
CG6950-PB 450 CG6950-PB 1..450 1..450 2387 100 Plus
CG6950-PA 450 CG6950-PA 1..450 1..450 2387 100 Plus
CG6950-PC 450 CG6950-PC 1..450 1..450 2387 100 Plus
CG1461-PB 501 CG1461-PB 176..449 126..415 225 23.5 Plus
CG1461-PA 501 CG1461-PA 176..449 126..415 225 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22608-PA 417 GI22608-PA 1..415 34..448 2050 90.4 Plus
Dmoj\GI15439-PA 479 GI15439-PA 125..392 97..373 230 25.3 Plus
Dmoj\GI13866-PA 421 GI13866-PA 22..407 61..445 187 26.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12368-PA 457 GL12368-PA 1..457 1..450 2171 89.3 Plus
Dper\GL14927-PA 501 GL14927-PA 174..447 126..415 246 24.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19977-PA 457 GA19977-PA 1..457 1..450 2154 88.8 Plus
Dpse\GA13109-PA 497 GA13109-PA 170..443 126..415 246 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26066-PA 450 GM26066-PA 1..450 1..450 2405 98.9 Plus
Dsec\GM17670-PA 503 GM17670-PA 178..451 126..415 229 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20629-PA 450 GD20629-PA 1..450 1..450 2400 98.7 Plus
Dsim\GD17166-PA 395 GD17166-PA 111..343 126..415 201 23.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23853-PA 417 GJ23853-PA 1..416 34..449 2091 91.6 Plus
Dvir\GJ19064-PA 470 GJ19064-PA 121..423 97..415 236 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12747-PA 448 GK12747-PA 1..448 1..450 2086 85 Plus
Dwil\GK20156-PA 513 GK20156-PA 125..455 63..415 229 23.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10079-PA 450 GE10079-PA 1..450 1..450 2366 97.1 Plus
Dyak\GE17134-PA 500 GE17134-PA 175..448 126..415 226 24.4 Plus
Dyak\GE20247-PA 418 GE20247-PA 22..412 61..450 154 24.3 Plus
Dyak\GE20248-PA 416 GE20248-PA 22..410 61..450 153 24.1 Plus

GH08974.hyp Sequence

Translation from 186 to 1538

> GH08974.hyp
MLRSCQLTLSAAKRSLREQFQLQALRHQQTAIKMEKFDLPKRLQGSTPSV
WNEYIALAMQYKPLNLGQGFPDDAAPEYVTHSLADIAKEQNPLLHQYTRG
YGHVRLVNALSKLYSGLVGKELNPLSDILITSGAYEALYSTIMGHVDVGD
EVIIIEPFFDCYEPMVKMAGGVPRFVPLKLRKTEGPISSADWVLDDAEFE
SLFNSKTKMIILNTPHNPIGKVFNRKELERIAELCRKWNVLCVSDEVYEW
LVFDGAEHIRICTLPGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRN
LQMVHQNSVYTCPTPLQEGVARSFEVELARLGQPESYFLSLPRELKQKRD
FMAKFLSESGMRPTIPEGGYFMLADWSPLAGKIDLSSEPDKHRDYKFTKW
MTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFIKKQENLDKAAELLSKWK
*

GH08974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6950-PD 450 CG6950-PD 1..450 1..450 2387 100 Plus
CG6950-PB 450 CG6950-PB 1..450 1..450 2387 100 Plus
CG6950-PA 450 CG6950-PA 1..450 1..450 2387 100 Plus
CG6950-PC 450 CG6950-PC 1..450 1..450 2387 100 Plus
CG1461-PB 501 CG1461-PB 176..449 126..415 225 23.5 Plus