Clone GH08991 Report

Search the DGRC for GH08991

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:89
Well:91
Vector:pOT2
Associated Gene/TranscriptCG4287-RA
Protein status:GH08991.pep: gold
Preliminary Size:2200
Sequenced Size:1648

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4287 2001-01-01 Release 2 assignment
CG4287 2001-09-19 Blastp of sequenced clone
CG4287 2003-01-01 Sim4 clustering to Release 3
CG4287 2008-04-29 Release 5.5 accounting
CG4287 2008-08-15 Release 5.9 accounting
CG4287 2008-12-18 5.12 accounting

Clone Sequence Records

GH08991.complete Sequence

1648 bp (1648 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058321

> GH08991.complete
ATCGAACTCAACAGCTGCTTGCCTAATTTGTGTCTACCTGGTTTATGTTG
AAATGTCTGAATTTTAAAGTTAATTAAGCCAAAATTTAAGTGCATTATGC
ATGGTCGTAAAAAAAATAAGAAATAAGCAACAGCTGACAGCTATTTCACC
CTTAATTGACTGGCACAAATTGCTTGGTCAAACAATAACAAAAGCGCTGT
GCTGACTAAGCGGCGAAAGTGGTTGCAACAAAGTCCAATCACTATCAATC
GCTAGCCATGGACAACAGCGCGTTGATGCCACAGGCGAGCGGACGTCATA
TGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAGCTTTACAAG
TCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGTGGAGCAGGT
GTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGCGAGAGTTGG
AGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTTTATCAACGC
TTCGTGCCCAATATGTGGGTGGGCATCACCTATGGGAGTTACGGAAGTTA
CCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCTGGACAGAGA
TGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAGACCCTTCGC
TTCCGGGACCATGAAGTCCAGTTCAAACTGAAGATGATAAGGCCCGTGGA
GCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTAATAGAAGTA
GCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCCTCCAAGCCG
GATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTTTTTGGCTGT
GCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACGACTTCATGA
CCAACGATGTCAACAAGAGGAACATTTTGGGCACCATTCGGTTTCTGGGT
CTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCTACGATTCCT
AGGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTTTCACACATA
CAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAACAAGATTGTG
GGTGCTATCTTCATACTTTTGACCATGATTTGGAAAGACATTGTCACTCG
TGGACATCCGGAACCGAAACAGCAGCAGCTGCATCTGGAGGCAAGTAGCC
GCTTCAAGAGCATCCAATACGAGCGTTCCGAACCAAATCGACGTAGTCCC
CGGTGGTGACCCGCCACTAAAAGCACATTAATGTCTAGCAAAGTGTTCCG
AGGTGTAAGGGCAACGAAAAATCATTGAAATTGTGTTACTAGCCGTAAGC
AAAGCGAAGCCAATCCCAATCCCCGCTTCGAGTCCGAGGGTATTTGCCCT
GCAAATATGGGGACACCTATGAGATTTACAGATTTTAGTCAATTGCAATA
TTGTAAATTATTAATTGGCGTGCCACTGGCGCACAATCGCATGCTTATTA
ACCCCACTGTTAATTCATTGTGTATTGTCCAAAAATATGTTTTATTAAAT
CCGTTTAGTGTTAGATCCTGTAATTTATGTATCGAAAATTATTGTGAATA
AATTGAATGCAATATGCGAAAATCGAAATGAAAAAAAAAAAAAAAAAA

GH08991.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4287-RA 1650 CG4287-RA 9..1641 1..1633 8165 100 Plus
CG4287-RB 1643 CG4287-RB 6..1634 1..1633 8080 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11786765..11788144 1630..251 6870 99.9 Minus
chr3R 27901430 chr3R 11788197..11788447 251..1 1255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15962164..15963546 1633..251 6915 100 Minus
3R 32079331 3R 15963599..15963849 251..1 1255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15702995..15704377 1633..251 6915 100 Minus
3R 31820162 3R 15704430..15704680 251..1 1255 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:34:36 has no hits.

GH08991.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:35:29 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11786765..11788143 252..1630 99 <- Minus
chr3R 11788197..11788447 1..251 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:18 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1002 258..1259 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:53 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RB 1..1002 258..1259 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:47 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1002 258..1259 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:45 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1002 258..1259 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:19 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1002 258..1259 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:35 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1630 1..1630 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:52 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1630 1..1630 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:47 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1630 1..1630 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:46 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 1..1630 1..1630 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:19 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
CG4287-RA 19..1648 1..1630 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:35:29 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15962167..15963545 252..1630 100 <- Minus
3R 15963599..15963849 1..251 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:35:29 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15962167..15963545 252..1630 100 <- Minus
3R 15963599..15963849 1..251 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:35:29 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15962167..15963545 252..1630 100 <- Minus
3R 15963599..15963849 1..251 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:47 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11787889..11789267 252..1630 100 <- Minus
arm_3R 11789321..11789571 1..251 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:13 Download gff for GH08991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15702998..15704376 252..1630 100 <- Minus
3R 15704430..15704680 1..251 100   Minus

GH08991.pep Sequence

Translation from 257 to 1258

> GH08991.pep
MDNSALMPQASGRHMPPEELAMQALTKQLYKSRLFRGYYMERCLVEQVSG
YRDVVVLQRSERELEKLLHSSAGQLQKFYQRFVPNMWVGITYGSYGSYQH
KADPGQLETCIWTEMNDLAFGEYWFSIKTLRFRDHEVQFKLKMIRPVEPE
LMATPRRSLILNRSSPVKAITAGGENSSSKPDEVAEQIQLGLNDFLAVLQ
QWGDGVKQTVYDFMTNDVNKRNILGTIRFLGLLIFSALGGAALALRFLGV
FAVRFLFELSRFTHTATPIVFKLIEFLNKIVGAIFILLTMIWKDIVTRGH
PEPKQQQLHLEASSRFKSIQYERSEPNRRSPRW*

GH08991.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16467-PA 329 GF16467-PA 1..329 1..333 1401 79 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20245-PA 331 GG20245-PA 1..331 1..333 1622 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13487-PA 357 GH13487-PA 27..351 13..333 1190 68.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4287-PB 333 CG4287-PB 1..333 1..333 1726 100 Plus
CG4287-PA 333 CG4287-PA 1..333 1..333 1726 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24636-PA 340 GI24636-PA 16..334 10..333 1153 68 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21722-PA 327 GL21722-PA 2..325 3..328 1147 65.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18083-PA 328 GA18083-PA 1..326 1..328 1155 65.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25741-PA 333 GM25741-PA 1..333 1..333 1689 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20315-PA 333 GD20315-PA 1..333 1..333 1703 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23458-PA 349 GJ23458-PA 12..343 3..333 1187 66.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11223-PA 242 GK11223-PA 1..242 1..244 620 49.2 Plus
Dwil\GK24916-PA 108 GK24916-PA 1..91 214..303 312 64.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26344-PA 332 GE26344-PA 1..332 1..333 1613 90.7 Plus

GH08991.hyp Sequence

Translation from 257 to 1258

> GH08991.hyp
MDNSALMPQASGRHMPPEELAMQALTKQLYKSRLFRGYYMERCLVEQVSG
YRDVVVLQRSERELEKLLHSSAGQLQKFYQRFVPNMWVGITYGSYGSYQH
KADPGQLETCIWTEMNDLAFGEYWFSIKTLRFRDHEVQFKLKMIRPVEPE
LMATPRRSLILNRSSPVKAITAGGENSSSKPDEVAEQIQLGLNDFLAVLQ
QWGDGVKQTVYDFMTNDVNKRNILGTIRFLGLLIFSALGGAALALRFLGV
FAVRFLFELSRFTHTATPIVFKLIEFLNKIVGAIFILLTMIWKDIVTRGH
PEPKQQQLHLEASSRFKSIQYERSEPNRRSPRW*

GH08991.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4287-PB 333 CG4287-PB 1..333 1..333 1726 100 Plus
CG4287-PA 333 CG4287-PA 1..333 1..333 1726 100 Plus