Clone GH09028 Report

Search the DGRC for GH09028

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:90
Well:28
Vector:pOT2
Associated Gene/TranscriptVap-33B-RC
Protein status:GH09028.pep: gold
Sequenced Size:1665

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33523 2002-11-11 Blastp of sequenced clone
CG33523 2008-04-29 Release 5.5 accounting
CG33523 2008-08-15 Release 5.9 accounting
CG33523 2008-12-18 5.12 accounting

Clone Sequence Records

GH09028.complete Sequence

1665 bp (1665 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001406

> GH09028.complete
ACAAGAGCCCAAAAGTCCGGCTTTGTCTATATGTCTTAGATCTTGAGTCT
GATTAAGGATATAAATTGTGTGTGGAGACTGGCGAATGTGACCAATGTCG
GAGGCAGGGCGTTTTAGTTACGTCACCTTTGTCGATTCCGCTCCCATGGT
GCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGCATGT
TGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAA
GCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGAT
CCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGCATCA
TCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGAGCAC
AAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGGTCGC
GCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGGAGCA
AATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTTC
GATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCAGTAA
GGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCAGCTA
CGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGTGACG
CTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGTACCA
GCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTATTCGT
GCGCTAAGCGCAAATAATATTTACTTAGCCCGTGCAATTTGACCAGGCAG
GAGCTAGACATTGCCGCTCGCGATAGCCACAACAATAACGAAGACGACTG
CGACTGTCCAGAGCTGGAGAACTGTGCCTGTGCTGTTGATTTGATGAATC
TAGGTCTGGACTGTGCCGATACGATGGACCAATACGATGGCGAATGCCTC
GAGGCACTGATACAGGCGCAGGGCACTGGTGATTGGCAGCTGGGCGGCGT
TGCTGCCGGCGGCCATTTGCTGGGATTCATCGCATTCGCAAGGAAGATGG
TGCGCGTCGTTCTTTCGCTATCGCTGCTGTGCGGCATCTTGTTCGTGAGC
TTCTACCTGGGAAGCAACTACGGCGGAAACTCCACCACCACTACCATAAC
CACCTCCCTAGCCACAGTCGACTCAGGCAGAGGCAATCGTCAGCCGTGTT
ACTACTCGTAGTGAAGCCAAAACCCTCAACTGTGCATGCCAGGGTGGTTC
GATTTGTTCAGCAGTAAATGCAACTTGTTCACCTCTGTACACGTAATAAT
CCATTTTGACCCTTGCCAGGTATGAAAACTACAAATATTAAAGCCTTCTT
ACATACTTCAATGGCTTGCATTCATGAATTCCCGGGTCCTGCGAATTGTT
TAGACACCTTTGCTTTTAAAGGTAATTTTAAGATGTTTCCCTTCATTGCA
AATCGAACCACCCTCCAAGCAAATACATATTTTTGTATAAATCTTAAGAC
CTACCATAAGAGTAACAATTTCGTGTTTCCTGATATTATTGAGTAAATGA
TGTCTCGCGCTTACGAGACAATCTCCCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

GH09028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-RC 1986 CG33523-RC 72..1091 1..1020 5100 100 Plus
CG33523.g 2671 CG33523.g 1003..1901 122..1020 4495 100 Plus
CG33523-RA 2150 CG33523-RA 357..1255 122..1020 4495 100 Plus
CG33523-RC 1986 CG33523-RC 1114..1724 1019..1629 3055 100 Plus
CG33523.g 2671 CG33523.g 1924..2534 1019..1629 3055 100 Plus
CG33523-RA 2150 CG33523-RA 1278..1888 1019..1629 3055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5922108..5922716 1019..1627 2955 99 Plus
chr3L 24539361 chr3L 5921700..5922085 635..1020 1885 99.2 Plus
chr3L 24539361 chr3L 5921298..5921636 297..635 1680 99.7 Plus
chr3L 24539361 chr3L 5920383..5920505 1..123 615 100 Plus
chr3L 24539361 chr3L 5921132..5921236 194..298 525 100 Plus
chr3L 24539361 chr3L 5920820..5920893 122..195 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5929512..5930122 1019..1629 3055 100 Plus
3L 28110227 3L 5929104..5929489 635..1020 1930 100 Plus
3L 28110227 3L 5928702..5929040 297..635 1695 100 Plus
3L 28110227 3L 5927787..5927909 1..123 615 100 Plus
3L 28110227 3L 5928536..5928640 194..298 525 100 Plus
3L 28110227 3L 5928224..5928297 122..195 370 100 Plus
3R 32079331 3R 8032017..8032061 18..62 195 95.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5922612..5923222 1019..1629 3055 100 Plus
3L 28103327 3L 5922204..5922589 635..1020 1930 100 Plus
3L 28103327 3L 5921802..5922140 297..635 1695 100 Plus
3L 28103327 3L 5920887..5921009 1..123 615 100 Plus
3L 28103327 3L 5921636..5921740 194..298 525 100 Plus
3L 28103327 3L 5921324..5921397 122..195 370 100 Plus
3R 31820162 3R 7772848..7772892 18..62 195 95.5 Plus
Blast to na_te.dros performed on 2019-03-16 12:01:46 has no hits.

GH09028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:02:44 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5920383..5920503 1..121 100 -> Plus
chr3L 5920820..5920892 122..194 100 -> Plus
chr3L 5921133..5921236 195..298 100 -> Plus
chr3L 5921300..5921635 299..634 99 -> Plus
chr3L 5921700..5922716 635..1627 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:23 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 1..723 95..817 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:06:32 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 1..723 95..817 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:20:01 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RF 802..1707 122..1026 99 <- Plus
CG33523-RF 1731..1965 1027..1261 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:56:21 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 1..723 95..817 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:45 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RF 802..1707 122..1026 99 <- Plus
Vap-33B-RF 1731..1965 1027..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:26:11 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 6..1032 1..1026 99 <- Plus
CG33523-RC 1056..1656 1027..1627 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:06:32 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 6..1032 1..1026 99 <- Plus
CG33523-RC 1056..1656 1027..1627 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:20:01 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 6..1032 1..1026 99 <- Plus
CG33523-RC 1056..1656 1027..1627 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:56:22 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 6..1032 1..1026 99 <- Plus
CG33523-RC 1056..1656 1027..1627 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:45 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 6..1032 1..1026 99 <- Plus
Vap-33B-RC 1056..1656 1027..1627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:44 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5928704..5929039 299..634 100 -> Plus
3L 5927787..5927907 1..121 100 -> Plus
3L 5928224..5928296 122..194 100 -> Plus
3L 5928537..5928640 195..298 100 -> Plus
3L 5929104..5930120 635..1627 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:44 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5928704..5929039 299..634 100 -> Plus
3L 5927787..5927907 1..121 100 -> Plus
3L 5928224..5928296 122..194 100 -> Plus
3L 5928537..5928640 195..298 100 -> Plus
3L 5929104..5930120 635..1627 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:44 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5928704..5929039 299..634 100 -> Plus
3L 5927787..5927907 1..121 100 -> Plus
3L 5928224..5928296 122..194 100 -> Plus
3L 5928537..5928640 195..298 100 -> Plus
3L 5929104..5930120 635..1627 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:20:01 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5920887..5921007 1..121 100 -> Plus
arm_3L 5921324..5921396 122..194 100 -> Plus
arm_3L 5921637..5921740 195..298 100 -> Plus
arm_3L 5921804..5922139 299..634 100 -> Plus
arm_3L 5922204..5923220 635..1627 97   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:50 Download gff for GH09028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5921804..5922139 299..634 100 -> Plus
3L 5922204..5923220 635..1627 97   Plus
3L 5920887..5921007 1..121 100 -> Plus
3L 5921324..5921396 122..194 100 -> Plus
3L 5921637..5921740 195..298 100 -> Plus

GH09028.pep Sequence

Translation from 94 to 816

> GH09028.pep
MSEAGRFSYVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKN
AEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKS
EHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVC
RFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQY
VTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

GH09028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24005-PA 662 GF24005-PA 269..503 10..234 803 69.4 Plus
Dana\GF23828-PA 176 GF23828-PA 26..142 35..151 184 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15302-PA 497 GG15302-PA 268..497 10..240 1039 90 Plus
Dere\GG13971-PA 166 GG13971-PA 8..122 36..150 194 32.2 Plus
Dere\GG14468-PA 232 GG14468-PA 1..172 28..197 147 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14689-PA 482 GH14689-PA 260..482 14..240 503 45.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PC 240 CG33523-PC 1..240 1..240 1243 100 Plus
CG33523-PA 234 CG33523-PA 4..234 10..240 1197 100 Plus
CG33523-PD 498 CG33523-PD 268..498 10..240 1197 100 Plus
CG33523-PF 654 CG33523-PF 268..498 10..240 1197 100 Plus
CG33523-PB 206 CG33523-PB 1..206 35..240 1068 100 Plus
CG6527-PB 166 CG6527-PB 8..141 36..169 186 28.4 Plus
CG6527-PA 166 CG6527-PA 8..141 36..169 186 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13304-PA 504 GI13304-PA 266..504 3..240 502 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21079-PA 498 GL21079-PA 270..497 10..240 605 54.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28323-PA 498 GA28323-PA 270..497 10..240 599 54.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14735-PA 497 GM14735-PA 267..497 10..240 1224 97.8 Plus
Dsec\GM24808-PA 162 GM24808-PA 8..141 36..169 192 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13915-PA 240 GD13915-PA 1..240 1..240 1267 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12072-PA 487 GJ12072-PA 273..487 10..240 432 44.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16664-PA 638 GK16664-PA 280..429 10..152 432 55.6 Plus
Dwil\GK12362-PA 144 GK12362-PA 3..122 33..151 157 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21523-PA 641 GE21523-PA 268..493 10..235 1053 92.9 Plus
Dyak\GE20270-PA 174 GE20270-PA 8..122 36..150 191 31.3 Plus

GH09028.hyp Sequence

Translation from 94 to 816

> GH09028.hyp
MSEAGRFSYVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKN
AEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKS
EHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVC
RFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQY
VTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

GH09028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PC 240 CG33523-PC 1..240 1..240 1243 100 Plus
Vap-33B-PA 234 CG33523-PA 4..234 10..240 1197 100 Plus
Vap-33B-PD 498 CG33523-PD 268..498 10..240 1197 100 Plus
Vap-33B-PF 654 CG33523-PF 268..498 10..240 1197 100 Plus
Vap-33B-PB 206 CG33523-PB 1..206 35..240 1068 100 Plus