Clone GH09035 Report

Search the DGRC for GH09035

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:90
Well:35
Vector:pOT2
Associated Gene/TranscriptCG10424-RA
Protein status:GH09035.pep: gold
Preliminary Size:1300
Sequenced Size:1212

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10424 2001-01-01 Release 2 assignment
CG10424 2001-10-10 Blastp of sequenced clone
CG10424 2003-01-01 Sim4 clustering to Release 3
CG10424 2008-04-29 Release 5.5 accounting
CG10424 2008-08-15 Release 5.9 accounting
CG10424 2008-12-18 5.12 accounting

Clone Sequence Records

GH09035.complete Sequence

1212 bp (1212 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060665

> GH09035.complete
GGCACAGTCCACAAAGAAAACCATTGCCGCCGGTAGAGATGGCTGCAGTT
TCGGATATTCCAGTGCACCTGCCCAAGCTGCTGGCTCTGTTCAAGACGGT
GGTGCCCAAGCTGGTGAACAACAAGCACAAGGGACAGTACGGACGCATTG
GAGTGATCGGTGGGTCCCTGGAGTACACCGGAGCGCCGTACTTCGCGGCC
ATTTCCTCGATAAGAGTGGGCGCTGACCTGGCGCATGTGTTCTGCCATTC
AAATGCGTCGGCCATTATCAAGTCCTACAGTCCCGATCTTATCGTGCATC
CAGTGCTAGACTGTGTGGATGCAGTGGAGAGAATAGCGCCCTGGTTAGAG
CGACTTCACGTCGTTGTTATTGGACCTGGACTGGGTCGGGAGCCGGGCAT
CCTGAAGACGGCATCCAACGTACTCAAGCTGTGCATGGACACCAAGAAAC
CAGTTGTCATAGACGCCGATGGACTGTTTCTGCTCAACGACAATCTGAAT
CTGATCTGTGGACAGCCGAATGTCATACTCACGCCAAATGTCATGGAGTT
CCAGAGACTGTTTGGCGAGGATGACCAGGCGGCGCGCCAGAAAATGTCCC
TCCTGGGAGCCGGAGTAACTGTCCTGGAGAAGGGCGCCAACGACAAGATC
TATCTCCCTCACTGCAACGAAGTTCACTCAATGCCTAGCGGCGGTTCCGG
TCGCAGGTGCGGTGGACAAGGTGACCTGCTCTCCGGATCTTTGGCCACCT
TCTTCTCGTGGTCACTGCAGTCGGGTGAACCCAATCCCGCCCTGGTAGCT
GCATGTGCCTCTAGTTACTTTGTGAAAAAGTTAAACGCGGCTGCATTTCA
AAAGTTTGGCCGCAGCCTACTGGCCAGTGACATGGTCAATCAAATACCCA
GCGTATTTCAGACCGAGTTCGAAAACAGCGATCCTCAATAGTCATTTACT
GGACTTTGAACTAATTCCAGCTGTTTGTTTTTTAAAACAAGGCGACCATT
AACCGAATTTTCAATTATCGTGGGATTTTTAATGTCTTTAACAGAGAACA
TATTGGAATGGATAGAAATGTTATGGGAATTTTTTAATTGCATTTAAACA
ACGTAAGAACATCTGGTTCGTTAATTTGAAAGCTGCATCTTGTTACAGAT
AAAATGTTTCGGCATTCATAATAAAACCATATTGATTCAATTTTAAAAAA
AAAAAAAAAAAA

GH09035.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10424-RA 1306 CG10424-RA 85..1284 1..1200 5985 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19085962..19086790 1194..366 4100 99.6 Minus
chr3L 24539361 chr3L 19086872..19087235 367..1 1695 98.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19096393..19097227 1200..366 4160 99.9 Minus
3L 28110227 3L 19097304..19097670 367..1 1835 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19089493..19090327 1200..366 4160 99.8 Minus
3L 28103327 3L 19090404..19090770 367..1 1835 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:25:14 has no hits.

GH09035.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:26:14 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19085962..19086790 366..1194 99 <- Minus
chr3L 19086874..19087235 1..365 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:24 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 1..903 39..941 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:49 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 1..903 39..941 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:35:43 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 1..903 39..941 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:44 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 1..903 39..941 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:11 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 1..903 39..941 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:42 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 43..1236 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:49 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 40..1233 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:35:43 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 40..1233 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:44 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 43..1236 1..1194 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:11 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG10424-RA 40..1233 1..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:14 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19096399..19097227 366..1194 100 <- Minus
3L 19097306..19097670 1..365 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:14 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19096399..19097227 366..1194 100 <- Minus
3L 19097306..19097670 1..365 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:14 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19096399..19097227 366..1194 100 <- Minus
3L 19097306..19097670 1..365 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:35:43 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19090406..19090770 1..365 100   Minus
arm_3L 19089499..19090327 366..1194 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:45 Download gff for GH09035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19089499..19090327 366..1194 100 <- Minus
3L 19090406..19090770 1..365 100   Minus

GH09035.hyp Sequence

Translation from 2 to 940

> GH09035.hyp
HSPQRKPLPPVEMAAVSDIPVHLPKLLALFKTVVPKLVNNKHKGQYGRIG
VIGGSLEYTGAPYFAAISSIRVGADLAHVFCHSNASAIIKSYSPDLIVHP
VLDCVDAVERIAPWLERLHVVVIGPGLGREPGILKTASNVLKLCMDTKKP
VVIDADGLFLLNDNLNLICGQPNVILTPNVMEFQRLFGEDDQAARQKMSL
LGAGVTVLEKGANDKIYLPHCNEVHSMPSGGSGRRCGGQGDLLSGSLATF
FSWSLQSGEPNPALVAACASSYFVKKLNAAAFQKFGRSLLASDMVNQIPS
VFQTEFENSDPQ*

GH09035.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10424-PA 300 CG10424-PA 1..300 13..312 1553 100 Plus

GH09035.pep Sequence

Translation from 38 to 940

> GH09035.pep
MAAVSDIPVHLPKLLALFKTVVPKLVNNKHKGQYGRIGVIGGSLEYTGAP
YFAAISSIRVGADLAHVFCHSNASAIIKSYSPDLIVHPVLDCVDAVERIA
PWLERLHVVVIGPGLGREPGILKTASNVLKLCMDTKKPVVIDADGLFLLN
DNLNLICGQPNVILTPNVMEFQRLFGEDDQAARQKMSLLGAGVTVLEKGA
NDKIYLPHCNEVHSMPSGGSGRRCGGQGDLLSGSLATFFSWSLQSGEPNP
ALVAACASSYFVKKLNAAAFQKFGRSLLASDMVNQIPSVFQTEFENSDPQ
*

GH09035.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15143-PA 212 GF15143-PA 1..192 1..192 707 66.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13426-PA 300 GG13426-PA 1..300 1..300 1450 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13567-PA 300 GH13567-PA 1..298 1..298 1201 71.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10424-PA 300 CG10424-PA 1..300 1..300 1553 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19565-PA 300 GI19565-PA 1..297 1..297 1244 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26101-PA 300 GL26101-PA 1..298 1..298 1261 74.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25285-PA 300 GA25285-PA 1..298 1..298 1253 74.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14893-PA 300 GM14893-PA 1..300 1..300 1556 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12303-PA 544 GD12303-PA 1..262 1..262 1263 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22066-PA 302 GJ22066-PA 1..298 1..298 1219 71.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18910-PA 304 GK18910-PA 1..297 1..297 1134 67.3 Plus
Dwil\GK19232-PA 176 GK19232-PA 1..168 129..296 630 64.3 Plus
Dwil\GK19231-PA 113 GK19231-PA 1..110 1..110 411 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22782-PA 300 GE22782-PA 1..300 1..300 1456 94 Plus
Dyak\GE22522-PA 300 GE22522-PA 1..300 1..300 1453 93.7 Plus