Clone GH09073 Report

Search the DGRC for GH09073

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:90
Well:73
Vector:pOT2
Associated Gene/TranscriptFbw5-RA
Protein status:GH09073.pep: gold
Preliminary Size:2179
Sequenced Size:2271

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9144 2002-01-01 Sim4 clustering to Release 2
CG9144 2002-05-18 Blastp of sequenced clone
CG9144 2003-01-01 Sim4 clustering to Release 3
CG9144 2008-04-29 Release 5.5 accounting
CG9144 2008-08-15 Release 5.9 accounting
CG9144 2008-12-18 5.12 accounting

Clone Sequence Records

GH09073.complete Sequence

2271 bp (2271 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118759

> GH09073.complete
CAAACAATAACAATAAGGGGGAAAGTTATCTTTAATCGCGAAGCCGCGGA
AACAAGGCAAGCTAAACCAGTTATTACCCAAGGGCACACTGACGGCGAAA
CATCAGTTTGGCCGTAACTTGCTCGAAAAAGACGAAGATCTAGCTTCTCT
ATCCCCATGGAAGTGACCTTCAAGAAGGCCCGACTGGGAAAGGAGAGACT
GGTGGAACAATCGGAGGAGGAGGAACGCGATGAGGGCTCCTCTGGCCAAG
ATTTGTTTGGGTGGTGGGCCCTGCCGGAGCCAGCGCTCTTGATGATCTTT
GAGCGCCTGAGTGTGCCCGATCTGCTGAGGGCGAGTCGCTGCTGTGTGCG
GTGGCACAGCATCGCCAAGGACGACTTATTGTGGCGCCACAAGTTCCAGG
AGCACTTCAAAGCCTCTCCGAGCATTCCGCTCAAGCCGGGGTCCGAAAGC
TGGCGAGCGGAGTACAAGCGCCTGTCCATGCACATACCCTTTGTCCAGGC
ACAGCGACTGGAGCCCACTGTGGAGAACAACCACGGCCACACGCACCAAG
TGCTGCATGTAAGCTTTGCCCACAACGGGGAAATGTTTGCCACCTGCTCC
AAGGACGGATATGTGATAATCTGGAACGCCCAGCATCCGTGTTCGGAGAA
GTATGCGCACAACATGAAGCAGTTCAGCTGGAAGTACTCCCAATACTCGC
AGTTCAATCAAAGCGACACCTTGCTTCTCGTCTCCGGTGTTCACTTTGGT
TCGCCCCAATCCACTTCCGGGGAGATTGCTGTATTCTATTTGGGAGCAAC
AGAGTCACACCTACGCTGCCGGGTGGTAAATCGTCCGTATGACATCTTTG
GCACCTGGTTCAGTGACCAATATCTGATCTCAGGCGACCTGCACTGGCTG
GCGCACTTGGTGAGCACCTCGGTTCTGTGGCTGAACAAGGCCAACCAAGA
AATTGACTCGGAGCATGTGCCGATCATGAGCCAGCTATATAAGTTTTACA
ACCGAAATGCTAGTTCGGTTCGAGCTATAATGGTGGCCAGGTGTCCATGG
CTGGACGAGAGTAACGATCCCCTGGCCACTACTGCCGACCAAGAAAGTCA
CAGCTCAGTGCTCTCGCCACCCACTGGAGATCAGGGATCTACCTCGCAGG
CCAGTGGCAATCCAGTGTCCCACGCTGCCAGCATACTACGCACAAGAAGC
TCAACACCCGAAGAAAACTACTTGCCGGACATCAGTGAGCGCCGTTCTAG
AGCGAGACTCGGCGATGCCACCATTCACTACTTAGATGAATACAGGACAG
CAGTGGCCACCACTAATGAATCGAACGATGACGACGACGAGGAGTACGAC
TCTATGGACGTACAAGAGGAATACGACGAAATGGAGAACAGTATACCCAA
ATATCTAATTTTTTCAACGGGCTCCACCACCTTCACGCCTCACCAAATTG
GATTCAAGCGCATACGCAACGTGTTCTTTCCCAAAAAGCTTGATCCTGGG
CCAAGTCTTAAAGAAAGAATAGCTGCAAAGCGCGCTGCCGAACAGCAACA
GCAGCAGACCCCGCGGACTGATCCAGACTGGTGGGATTATGAGTCAGTCA
AGGATAGATTCGACAAGGTGGACAAGGTAATTGACTTGCACGGACATATT
ATTGGCATGGCACTGAGCCCGGACCACCGCTACTTGTACGTCAACACACG
TCCCTGGCCAAAGAACTACGTGATCACCAACCCTCTGGAGCCGCCACCAA
TTGCTCAAGAGATTGACATCCACGTAATTGACCTAATGACTCTCAAGCGG
GTGGGCAACATGCTGCGCGCCCACAAGGCCTACACTCCCAGCGCGGAGTG
CTTCTTTATCTTCCTTGATGTTTGCGAGGAGTACGTGGCCAGTGGAGCGG
AAGATCAACATGCCTACCTGTGGGATAGGTACTACGGCATCAGCCTAGCA
AAGTTTAAGCACTCGGATGTGGTTAACAGTGTGGCCTTCAATCCTCGCGA
CTCGGAGATGCTGGTCACCACCAGCGACGACTACACAATTAAGGTCTGGC
GATCACGAGCAAAGGCAAAGGAGTTCAATATCCCCATTAACGTCAGCGAA
TCCTTTGAGTTGAAGCCGAAAAACTAATGACTGCATACGATTTCAAATCC
CCAAGTGGTTCTTACTGCCTAAAAACACCGTCTTTGTAGATCTGAGTGCT
TGCTAGTTGGTTCCATGTTGTTAACGTTTATAATTATATATATACATTCT
ACGAAAAAAAAAAAAAAAAAA

GH09073.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Fbw5-RA 2369 Fbw5-RA 60..2313 1..2254 11270 100 Plus
CG13994-RA 762 CG13994-RA 647..762 2254..2139 580 100 Minus
CG13994.a 789 CG13994.a 674..789 2254..2139 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6062875..6064301 2045..619 7135 100 Minus
chr2L 23010047 chr2L 6064355..6064972 618..1 3090 100 Minus
chr2L 23010047 chr2L 6062613..6062824 2253..2042 1060 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063824..6065250 2045..619 7135 100 Minus
2L 23513712 2L 6065304..6065921 618..1 3090 100 Minus
2L 23513712 2L 6063561..6063773 2254..2042 1065 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063824..6065250 2045..619 7135 100 Minus
2L 23513712 2L 6065304..6065921 618..1 3090 100 Minus
2L 23513712 2L 6063561..6063773 2254..2042 1065 100 Minus
Blast to na_te.dros performed 2019-03-15 19:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 3627..3658 1418..1387 115 84.4 Minus

GH09073.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:27:30 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6062613..6062822 2044..2253 100 <- Minus
chr2L 6062877..6064301 619..2043 100 <- Minus
chr2L 6064355..6064972 1..618 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:38 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9144-RA 1..1971 157..2127 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:46:34 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
Fbw5-RA 1..1971 157..2127 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:44 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
Fbw5-RA 1..1971 157..2127 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:48 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9144-RA 1..1971 157..2127 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:33 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
Fbw5-RA 1..1971 157..2127 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:22:14 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9144-RA 29..2281 1..2253 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:46:34 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
Fbw5-RA 29..2281 1..2253 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:44 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
Fbw5-RA 33..2285 1..2253 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:48 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9144-RA 29..2281 1..2253 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:33 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
Fbw5-RA 33..2285 1..2253 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:30 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6063562..6063771 2044..2253 100 <- Minus
2L 6063826..6065250 619..2043 100 <- Minus
2L 6065304..6065921 1..618 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:30 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6063562..6063771 2044..2253 100 <- Minus
2L 6063826..6065250 619..2043 100 <- Minus
2L 6065304..6065921 1..618 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:30 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6063562..6063771 2044..2253 100 <- Minus
2L 6063826..6065250 619..2043 100 <- Minus
2L 6065304..6065921 1..618 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:44 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063562..6063771 2044..2253 100 <- Minus
arm_2L 6063826..6065250 619..2043 100 <- Minus
arm_2L 6065304..6065921 1..618 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:14 Download gff for GH09073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6063562..6063771 2044..2253 100 <- Minus
2L 6063826..6065250 619..2043 100 <- Minus
2L 6065304..6065921 1..618 100   Minus

GH09073.pep Sequence

Translation from 156 to 2126

> GH09073.pep
MEVTFKKARLGKERLVEQSEEEERDEGSSGQDLFGWWALPEPALLMIFER
LSVPDLLRASRCCVRWHSIAKDDLLWRHKFQEHFKASPSIPLKPGSESWR
AEYKRLSMHIPFVQAQRLEPTVENNHGHTHQVLHVSFAHNGEMFATCSKD
GYVIIWNAQHPCSEKYAHNMKQFSWKYSQYSQFNQSDTLLLVSGVHFGSP
QSTSGEIAVFYLGATESHLRCRVVNRPYDIFGTWFSDQYLISGDLHWLAH
LVSTSVLWLNKANQEIDSEHVPIMSQLYKFYNRNASSVRAIMVARCPWLD
ESNDPLATTADQESHSSVLSPPTGDQGSTSQASGNPVSHAASILRTRSST
PEENYLPDISERRSRARLGDATIHYLDEYRTAVATTNESNDDDDEEYDSM
DVQEEYDEMENSIPKYLIFSTGSTTFTPHQIGFKRIRNVFFPKKLDPGPS
LKERIAAKRAAEQQQQQTPRTDPDWWDYESVKDRFDKVDKVIDLHGHIIG
MALSPDHRYLYVNTRPWPKNYVITNPLEPPPIAQEIDIHVIDLMTLKRVG
NMLRAHKAYTPSAECFFIFLDVCEEYVASGAEDQHAYLWDRYYGISLAKF
KHSDVVNSVAFNPRDSEMLVTTSDDYTIKVWRSRAKAKEFNIPINVSESF
ELKPKN*

GH09073.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15406-PA 661 GF15406-PA 1..661 1..656 2900 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10138-PA 656 GG10138-PA 1..656 1..656 3332 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10935-PA 676 GH10935-PA 1..676 1..656 2793 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fbw5-PA 656 CG9144-PA 1..656 1..656 3511 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13488-PA 662 GI13488-PA 1..662 1..656 2756 80.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19079-PA 658 GL19079-PA 1..657 1..655 3051 86.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21573-PA 658 GA21573-PA 1..657 1..655 3051 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17963-PA 656 GM17963-PA 1..656 1..656 3466 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22601-PA 656 GD22601-PA 1..656 1..656 3447 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12129-PA 673 GJ12129-PA 1..672 1..655 2885 81.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15391-PA 676 GK15391-PA 1..676 1..656 2810 78.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18949-PA 627 GE18949-PA 1..627 1..656 3125 90.1 Plus

GH09073.hyp Sequence

Translation from 156 to 2126

> GH09073.hyp
MEVTFKKARLGKERLVEQSEEEERDEGSSGQDLFGWWALPEPALLMIFER
LSVPDLLRASRCCVRWHSIAKDDLLWRHKFQEHFKASPSIPLKPGSESWR
AEYKRLSMHIPFVQAQRLEPTVENNHGHTHQVLHVSFAHNGEMFATCSKD
GYVIIWNAQHPCSEKYAHNMKQFSWKYSQYSQFNQSDTLLLVSGVHFGSP
QSTSGEIAVFYLGATESHLRCRVVNRPYDIFGTWFSDQYLISGDLHWLAH
LVSTSVLWLNKANQEIDSEHVPIMSQLYKFYNRNASSVRAIMVARCPWLD
ESNDPLATTADQESHSSVLSPPTGDQGSTSQASGNPVSHAASILRTRSST
PEENYLPDISERRSRARLGDATIHYLDEYRTAVATTNESNDDDDEEYDSM
DVQEEYDEMENSIPKYLIFSTGSTTFTPHQIGFKRIRNVFFPKKLDPGPS
LKERIAAKRAAEQQQQQTPRTDPDWWDYESVKDRFDKVDKVIDLHGHIIG
MALSPDHRYLYVNTRPWPKNYVITNPLEPPPIAQEIDIHVIDLMTLKRVG
NMLRAHKAYTPSAECFFIFLDVCEEYVASGAEDQHAYLWDRYYGISLAKF
KHSDVVNSVAFNPRDSEMLVTTSDDYTIKVWRSRAKAKEFNIPINVSESF
ELKPKN*

GH09073.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Fbw5-PA 656 CG9144-PA 1..656 1..656 3511 100 Plus