Clone GH09088 Report

Search the DGRC for GH09088

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:90
Well:88
Vector:pOT2
Associated Gene/TranscriptCG6304-RA
Protein status:GH09088.pep: gold
Preliminary Size:1506
Sequenced Size:1422

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6304 2001-01-01 Release 2 assignment
CG6304 2001-07-04 Blastp of sequenced clone
CG6304 2003-01-01 Sim4 clustering to Release 3
CG6304 2008-04-29 Release 5.5 accounting
CG6304 2008-08-15 Release 5.9 accounting
CG6304 2008-12-18 5.12 accounting

Clone Sequence Records

GH09088.complete Sequence

1422 bp (1422 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047579

> GH09088.complete
CATAAATATACAGGTACTGGTCTGAAACATTTATTACAAAAAATTCAAAA
AACAAAAATATAGCGAAGAAGGATAAAGACCATGTACAACAATATTAAGG
GCCTACACATAAATGAATACCAGAGGGAGAATGGAGATAATACCAGAAAG
CTGGCGTGTGAAGGTACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGT
GCCACGTTACAAGAGGGAACAACCAGCAAAAGATGATGCTATAGTTGGTA
ACAGTAACATGAGCAACACCAATAACGACGACCAAAAACCAAAATCTAAC
CTTATGTTGCCGTGGAAAGGATTTCCGAATAAATCTCAAAAACCTTCTCG
CAATGTGGACTACATAGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCA
TTGGCCAACAACTCGTGGAAAATGTTTCCACTACGCCCTCAAAAGTCCAT
TTAAATGATCCTGTTCCAGCTGGAAATCGCATTGATCACGAGGAAAGGCG
CCGCGAACACGATAGAAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAAC
AGCGTAGAATGAGGGATCCTGTCATTGCCCCCACGGAGGGCAATGAAAAC
TCAAAGAACGTGCCGCCAATTATAAATATCTCACGATCTCCAATAAAGTT
CACGCCAAATGAAAGGATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAG
AGCGTATCGAGCGTATCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAA
GTGAAGAAAGAGCAGCTCAAGGAGGAGAAGATTTGTTTTGATAATGCACC
CAATGAATCTAATAAGCCTAATGAACCTGCTAAACCTATGCCTCAGCATC
CGGAGAAGACAAATGAAGTGCCCATAGTTACCAAAAAGAGGTACATACCA
ACCACCAAGGAATGGGACGAGCGATGTCGTGCCAAACATTTGGCTAAGAT
GGAAGCTGAAAAGAAAAATCAGATGGGTGTTCAGGATGCGAACCCTTCGC
AATCTGCTGTGCCACCAAAACCATTGGTGACCTCCAATGTGGTGAACATA
TCTCCGTCGGGAGTTATTCGTCTGTGCGATCGCTTTAGTCCACCTGCTAA
ACAATGCGATACGGAGAAGCGCAGGGGAAATCTCACACACTTCCGACCCC
TTCAAAACTGGACAATCCGTCGAAATCCGCCGGTACCATTGAACAACCTG
TGCAATAAAAATGGAAAGATCGTGCAGCGCTATAGCATCGACCAACTGCT
GGTTTTGGAGCCTCAACCTGAAGAACTGAAAGTGCCTCAATTGGATAAGG
CCCTGTTAGGCTTGGGATTTCTGTACGATTCATTTGAGGGCTCTCCATAA
ATGTATTCGAATTTAATCTGAACTTATTGATTAAAAAACATTTTATCATT
TTCCAAAAAAAAAAAAAAAAAA

GH09088.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-RA 1536 CG6304-RA 67..1472 1..1406 7030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17010176..17011236 1404..344 5305 100 Minus
chr2L 23010047 chr2L 17011298..17011640 343..1 1715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17011550..17012612 1406..344 5315 100 Minus
2L 23513712 2L 17012674..17013016 343..1 1715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17011550..17012612 1406..344 5315 100 Minus
2L 23513712 2L 17012674..17013016 343..1 1715 100 Minus
Blast to na_te.dros performed 2019-03-16 12:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 906..1035 23..151 125 56.2 Plus

GH09088.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:39 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17010176..17011236 344..1404 100 <- Minus
chr2L 17011298..17011640 1..343 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:43 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 1..1269 82..1350 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:39 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 1..1269 82..1350 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:07 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 1..1269 82..1350 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:46 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 1..1269 82..1350 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:28:44 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 39..1442 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:39 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 39..1442 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:07 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 39..1442 1..1404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:01 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 39..1442 1..1404 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:46 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 119..1522 1..1404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:39 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17011552..17012612 344..1404 100 <- Minus
2L 17012674..17013016 1..343 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:39 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17011552..17012612 344..1404 100 <- Minus
2L 17012674..17013016 1..343 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:39 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17011552..17012612 344..1404 100 <- Minus
2L 17012674..17013016 1..343 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:07 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17011552..17012612 344..1404 100 <- Minus
arm_2L 17012674..17013016 1..343 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:58 Download gff for GH09088.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17011552..17012612 344..1404 100 <- Minus
2L 17012674..17013016 1..343 100   Minus

GH09088.pep Sequence

Translation from 81 to 1349

> GH09088.pep
MYNNIKGLHINEYQRENGDNTRKLACEGTVKLNANAQEFVPRYKREQPAK
DDAIVGNSNMSNTNNDDQKPKSNLMLPWKGFPNKSQKPSRNVDYIVLPST
KRFKKPIGQQLVENVSTTPSKVHLNDPVPAGNRIDHEERRREHDRKIAVE
ALKLAEQRRMRDPVIAPTEGNENSKNVPPIINISRSPIKFTPNERIRVDR
LRAAKRERIERILREMTNSKQSQVKKEQLKEEKICFDNAPNESNKPNEPA
KPMPQHPEKTNEVPIVTKKRYIPTTKEWDERCRAKHLAKMEAEKKNQMGV
QDANPSQSAVPPKPLVTSNVVNISPSGVIRLCDRFSPPAKQCDTEKRRGN
LTHFRPLQNWTIRRNPPVPLNNLCNKNGKIVQRYSIDQLLVLEPQPEELK
VPQLDKALLGLGFLYDSFEGSP*

GH09088.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15113-PA 444 GF15113-PA 26..444 18..416 769 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21759-PA 448 GG21759-PA 1..444 1..418 1354 63.5 Plus
Dere\GG18241-PA 1786 GG18241-PA 227..523 48..296 357 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-PB 422 CG6304-PB 1..422 1..422 2228 100 Plus
CG6304-PA 422 CG6304-PA 1..422 1..422 2228 100 Plus
CG9777-PA 413 CG9777-PA 76..410 46..409 320 30.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14283-PA 532 GI14283-PA 70..532 31..416 338 30.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16045-PA 522 GL16045-PA 22..521 3..415 431 30.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26113-PA 524 GA26113-PA 31..523 16..415 411 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17143-PA 431 GM17143-PA 1..430 1..421 1680 81.9 Plus
Dsec\GM13385-PA 990 GM13385-PA 248..493 121..411 233 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21884-PA 322 GD21884-PA 1..234 1..226 942 84.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16242-PA 477 GJ16242-PA 60..475 31..414 387 32.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23795-PA 435 GK23795-PA 48..435 31..416 472 35.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13149-PA 438 GE13149-PA 1..438 1..422 1406 67 Plus
Dyak\GE15957-PA 1885 GE15957-PA 261..629 67..370 400 31.4 Plus

GH09088.hyp Sequence

Translation from 81 to 1349

> GH09088.hyp
MYNNIKGLHINEYQRENGDNTRKLACEGTVKLNANAQEFVPRYKREQPAK
DDAIVGNSNMSNTNNDDQKPKSNLMLPWKGFPNKSQKPSRNVDYIVLPST
KRFKKPIGQQLVENVSTTPSKVHLNDPVPAGNRIDHEERRREHDRKIAVE
ALKLAEQRRMRDPVIAPTEGNENSKNVPPIINISRSPIKFTPNERIRVDR
LRAAKRERIERILREMTNSKQSQVKKEQLKEEKICFDNAPNESNKPNEPA
KPMPQHPEKTNEVPIVTKKRYIPTTKEWDERCRAKHLAKMEAEKKNQMGV
QDANPSQSAVPPKPLVTSNVVNISPSGVIRLCDRFSPPAKQCDTEKRRGN
LTHFRPLQNWTIRRNPPVPLNNLCNKNGKIVQRYSIDQLLVLEPQPEELK
VPQLDKALLGLGFLYDSFEGSP*

GH09088.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-PB 422 CG6304-PB 1..422 1..422 2228 100 Plus
CG6304-PA 422 CG6304-PA 1..422 1..422 2228 100 Plus
CG9777-PA 413 CG9777-PA 76..410 46..409 320 30.3 Plus