Clone GH09096 Report

Search the DGRC for GH09096

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:90
Well:96
Vector:pOT2
Associated Gene/TranscriptCG32066-RB
Protein status:GH09096.pep: gold
Preliminary Size:2317
Sequenced Size:2217

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6487 2001-01-01 Release 2 assignment
CG6491 2001-01-01 Release 2 assignment
CG32066 2001-11-02 Blastp of sequenced clone
CG32066 2003-01-01 Sim4 clustering to Release 3
CG32066 2008-04-29 Release 5.5 accounting
CG32066 2008-08-15 Release 5.9 accounting
CG32066 2008-12-18 5.12 accounting

Clone Sequence Records

GH09096.complete Sequence

2217 bp (2217 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069073

> GH09096.complete
CCCAACCATCTGTGTTATTTTTTCCCATCTTCGAAGGGGGCTGAAAACAT
AGAAAACGCGGGGTTTTGTTGTCACCGCCTTTTCCCACCCTTGAAACTGC
CCTTTTCCATTGTCCTCCGAAAGATGAAACAAGTTCCTGAATTGAATGCA
GCTTCCCCCACCATCAACCTCCACAATCCACTATCCACTATCCCTAGCAA
CTTTTGCAGCTGCCTTTTGGGTAACCAGCCCATTTATTAGGCCCTTTTTT
CGTGACAACAGGTGCAACAGCTGCTATATCTTCTGTATTCTTTGTGTTCC
CACTCCCTTTCAGTGCTCCAAATAAATAAAACAACAAATTCCAAAAAAGT
GCTAATTAATAACGCAACGAAATAGAAGCAAACACCAATACTACGAAATC
CCCCAAAACTACAAGTATTAGTTAATCAAAGAAAATGGGAAAGCTGCTGA
GCCTGCTGTCACGCGACGACTCCAATTGTTGCGCCGCCAAATCCTACGAT
GTCTTCCTGGATTTCGAGAACGCCGCGCCCACGGAAACGGAGCGTGCCGT
CTACGACGAGGTGGAGCGGGTACTCCGGGAATCGGAGGTGGTGCTCGACG
AGATACAGATCTATCGGGGTGCCGGCAAGGAAATCCGAGAAGCCATCGCC
GATCCATCGCCGGAGGTGACCGCCAAAGCCTGGGCGGCGGTGCTGCCGTT
GGTGAACAAGCTGAAGCGCTGCTACGAGCATTCCATGGAGCTGGACAAGA
TTGTGCCCAAGCTGCTGGGCCAGCTGGTGGGCGGAAAACTGAATCCGACA
CAGCATCTGGAGACGCAGCAGGCGCTGGTCAAGCAGCTGGCCGAGATCTT
GGAGTTCGTGCTGAAGTTCGATGAGTACAAGATGAAAACCCCCGCCATAC
AGAATGATTTTAGCTACTACAGACGCATCGTCAGCCGACAGCGTGTGGAT
TCCACGGAGAATATGCTGGTCAGCACGGAACTGGCCAACCGGATGTCCCT
GTTCTACGCCCACGCCACGCCCATGCTCAAGGTGCTGAGCGAGGCGACCT
CAAAGTTTGTCAATGACAATGCCGATGATGTCCAGAACACGACGGAAACG
CTGGGCACCATGGCCAAGGTGTGCCTGAGGATGCTGGAAAATCCAAAACT
CCTGCAACAGATCGAGCGTGAGGACACGAAAATGCTGGTGCTGCGCGTAA
TGGTCGGCCTGGTGATCCTCTACGACCATGTGCATCCGGAGGGAGCCTTC
GTGCGTGGCGCCCATGTGGATGTGAAGGGGTGCGTCCGACTGCTGCAGGC
GCAACCGGCCATCAAGGCGGAGCCGCTGCTGAATGCCCTGCGATACACGA
CGAAGCATTTGAATGGGGAGAACACGCCGAAGAATATACAGCGTTTGTTG
GCCGCATAATATTGGAGGGGATCGGTGGGCGCGGCCGGTGTGGGCGGAGA
GTTCATTAACGTTAATTTCTATGTGTATGCGTATCGATTTAAATGGTTTT
TTACCTTTATTTATGTAATTAGTAGGCTTCTGTATTATTTGTAAAAAATT
GTGAGCGAGTGTTGTGCTAGCAGGAGGCAACCTCTAGTTTTATTTTTACC
CTGTGTGCATTTCCAGCATTTGTTTCGTACTGTTTTAGACTCCAGCCTCC
GCGTAACGTAGCAAAGAAGTCGGACAAAAAGTGGGACGCATATATCAGCA
GCAACAATATTTAGTTGTTAATCTAGCCCTAATTTTAAGTAATGCAAGGA
ACCCAATTAACCTAAAAACAAATTAGCGCAAAGTTTAAACTGATGTTTGG
GTATACGAGATGTATGAGATAAATCCTAAATTCCACTAATGCAGAGATTA
TAAATATAAAACAAAAAAAAAAAAACATTTTTAAATCAAATCTAAAGTAT
TTTTTTGTACATGACAATGTGTTTAGAACGTGGTGTAAAGATCTAAAGAA
TGCATAAACTAATTGATTACTATAACAAACGAATTGTACGACCTAAAATG
CCTACACACAACTGAACCACAAGCTAAAAAGCGGATGCATTTATATATTT
TCACGCCGTCAACTTTGATAAACGTATTTAAACAAATCTACAACAGAATA
AACTTGAGCTGCGCAATAATAATAATTTTTAAGATTTACAAATAGAAATA
AAGGATTAATAAAATGGCAAAACTTAACGCATACAATTTGTACCAAAAAA
AAAAAAAAAAAAAAAAA

GH09096.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-RB 2406 CG32066-RB 85..2289 1..2205 11025 100 Plus
CG32066-RC 2257 CG32066-RC 245..2138 312..2205 9470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10631805..10632855 2194..1145 4965 98.6 Minus
chr3L 24539361 chr3L 10650751..10651368 618..1 3000 99 Minus
chr3L 24539361 chr3L 10638238..10638506 885..617 1315 99.3 Minus
chr3L 24539361 chr3L 10632922..10633186 1144..880 1310 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:39:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10640405..10641465 2205..1145 5305 100 Minus
3L 28110227 3L 10659364..10659981 618..1 3090 100 Minus
3L 28110227 3L 10646859..10647127 885..617 1330 99.6 Minus
3L 28110227 3L 10641532..10641796 1144..880 1325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10633505..10634565 2205..1145 5305 100 Minus
3L 28103327 3L 10652464..10653081 618..1 3090 100 Minus
3L 28103327 3L 10639959..10640227 885..617 1330 99.6 Minus
3L 28103327 3L 10634632..10634896 1144..880 1325 100 Minus
Blast to na_te.dros performed 2019-03-15 17:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 694..804 2080..2188 126 60.7 Plus
transib4 2656 transib4 TRANSIB4 2656bp 2551..2614 1821..1885 124 67.7 Plus
roo 9092 roo DM_ROO 9092bp 569..620 1837..1886 120 73.1 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 2563..2624 2129..2193 119 69.2 Plus

GH09096.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:28:16 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10638242..10638505 618..881 99 <- Minus
chr3L 10631805..10632855 1145..2194 94 <- Minus
chr3L 10632922..10633184 882..1144 99 <- Minus
chr3L 10650752..10651368 1..617 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:07:59 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..975 435..1409 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:47 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..975 435..1409 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:32 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 1..975 435..1409 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:36 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..975 435..1409 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:44 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RC 1..975 435..1409 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:59 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..2194 1..2194 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:47 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..2194 1..2194 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:32 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..2194 1..2194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:36 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..2194 1..2194 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:44 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
CG32066-RB 1..2194 1..2194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:16 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10640416..10641465 1145..2194 100 <- Minus
3L 10641532..10641794 882..1144 100 <- Minus
3L 10646863..10647126 618..881 100 <- Minus
3L 10659365..10659981 1..617 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:16 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10640416..10641465 1145..2194 100 <- Minus
3L 10641532..10641794 882..1144 100 <- Minus
3L 10646863..10647126 618..881 100 <- Minus
3L 10659365..10659981 1..617 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:16 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10640416..10641465 1145..2194 100 <- Minus
3L 10641532..10641794 882..1144 100 <- Minus
3L 10646863..10647126 618..881 100 <- Minus
3L 10659365..10659981 1..617 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:32 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10633516..10634565 1145..2194 100 <- Minus
arm_3L 10634632..10634894 882..1144 100 <- Minus
arm_3L 10639963..10640226 618..881 100 <- Minus
arm_3L 10652465..10653081 1..617 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:31 Download gff for GH09096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10633516..10634565 1145..2194 100 <- Minus
3L 10634632..10634894 882..1144 100 <- Minus
3L 10639963..10640226 618..881 100 <- Minus
3L 10652465..10653081 1..617 100   Minus

GH09096.pep Sequence

Translation from 434 to 1408

> GH09096.pep
MGKLLSLLSRDDSNCCAAKSYDVFLDFENAAPTETERAVYDEVERVLRES
EVVLDEIQIYRGAGKEIREAIADPSPEVTAKAWAAVLPLVNKLKRCYEHS
MELDKIVPKLLGQLVGGKLNPTQHLETQQALVKQLAEILEFVLKFDEYKM
KTPAIQNDFSYYRRIVSRQRVDSTENMLVSTELANRMSLFYAHATPMLKV
LSEATSKFVNDNADDVQNTTETLGTMAKVCLRMLENPKLLQQIEREDTKM
LVLRVMVGLVILYDHVHPEGAFVRGAHVDVKGCVRLLQAQPAIKAEPLLN
ALRYTTKHLNGENTPKNIQRLLAA*

GH09096.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23824-PA 324 GF23824-PA 1..324 1..324 1691 97.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13967-PA 324 GG13967-PA 1..324 1..324 1713 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16543-PA 324 GH16543-PA 1..324 1..324 1606 92.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-PB 324 CG32066-PB 1..324 1..324 1639 100 Plus
CG32066-PC 324 CG32066-PC 1..324 1..324 1639 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13832-PA 324 GI13832-PA 1..324 1..324 1639 94.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15589-PA 324 GL15589-PA 1..324 1..324 1670 96.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16653-PA 324 GA16653-PA 1..324 1..324 1670 96.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24803-PA 324 GM24803-PA 1..324 1..324 1721 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12855-PA 210 GD12855-PA 1..177 1..177 935 99.4 Plus
Dsim\GD12856-PA 99 GD12856-PA 1..99 226..324 523 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11698-PA 324 GJ11698-PA 1..324 1..324 1629 93.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12357-PA 324 GK12357-PA 1..324 1..324 1568 94.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20264-PA 324 GE20264-PA 1..324 1..324 1721 99.4 Plus

GH09096.hyp Sequence

Translation from 434 to 1408

> GH09096.hyp
MGKLLSLLSRDDSNCCAAKSYDVFLDFENAAPTETERAVYDEVERVLRES
EVVLDEIQIYRGAGKEIREAIADPSPEVTAKAWAAVLPLVNKLKRCYEHS
MELDKIVPKLLGQLVGGKLNPTQHLETQQALVKQLAEILEFVLKFDEYKM
KTPAIQNDFSYYRRIVSRQRVDSTENMLVSTELANRMSLFYAHATPMLKV
LSEATSKFVNDNADDVQNTTETLGTMAKVCLRMLENPKLLQQIEREDTKM
LVLRVMVGLVILYDHVHPEGAFVRGAHVDVKGCVRLLQAQPAIKAEPLLN
ALRYTTKHLNGENTPKNIQRLLAA*

GH09096.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32066-PB 324 CG32066-PB 1..324 1..324 1639 100 Plus
CG32066-PC 324 CG32066-PC 1..324 1..324 1639 100 Plus