Clone GH09123 Report

Search the DGRC for GH09123

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:91
Well:23
Vector:pOT2
Associated Gene/TranscriptCG3987-RA
Protein status:GH09123.pep: gold
Preliminary Size:1504
Sequenced Size:1484

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3987 2001-01-01 Release 2 assignment
CG3987 2001-11-02 Blastp of sequenced clone
CG3987 2003-01-01 Sim4 clustering to Release 3
CG3987 2008-04-29 Release 5.5 accounting
CG3987 2008-08-15 Release 5.9 accounting
CG3987 2008-12-18 5.12 accounting

Clone Sequence Records

GH09123.complete Sequence

1484 bp (1484 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069074

> GH09123.complete
TTCACACTGCACTTTACGCATAGCCGGTCGTCCCAGAAATTTGAAGAGCC
AAACAGTTGATAATGGCACATTCAATGCTGAAACTGGGGATGATGTGTGG
AATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTGAAAA
ACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACCCAAT
CTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCAATGT
TTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCGGACC
TGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATATAGTG
GCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGACCAA
CGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAGGTCA
ATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGGACTG
GGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATCGCGA
GTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAGCGGA
TCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGTGGTG
CAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAATATGT
GCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACACGGT
GTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAATCCA
GGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTATCTG
CGAGCACTGCCTCAATTATCCCTACGGATACATTCTGCAAAATGGTCTGC
CCGCCCAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCCCTCATGTAT
AATCCTCCTTGGATGTACAATCCATATTATGTGGCATATCCAGCCTTTAA
CAATATACCGGCCATACAGAACAATAATAATGGCAACAGCGGTGACACCA
GTGTAGATAAAACCATTGCAGATGATGATGACGATGGATGGACTCTATGT
GACGACATCGAAAAATGCCTAGACGCGGAATACAAAGGCTCGCAGAACAG
CGGGTCACCTGAACATCTGGTCGACGACGACGACTACAACGTTTCAGTTC
AGCGAAGGAGACGCCGTCCAAGCCGTCACCACTTTGTGAGATCAGCCTAC
AGCAAACGCAATCGCAAGCACAACTGATCAATTCCAGATGAAACCACAAA
CTCTTTAGATTTTCTGCAAACCTTTTGCTTCAGAAAGAAATAGTCTAGAA
ATATTGTATTTCTGATTAACCAAAACTAAGGTGTCTTCATATAACTACTA
CATTTCTCTACATATTTTACTGAATAAAAGTGTTTTTGCTAACCAAATGA
ATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH09123.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-RA 1607 CG3987-RA 132..1592 1..1461 7290 99.9 Plus
CG6904-RC 2794 CG6904-RC 2741..2794 1461..1408 255 98.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10964981..10966360 77..1456 6855 99.8 Plus
chr3R 27901430 chr3R 10964630..10964710 1..81 390 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15140336..15141720 77..1461 6910 99.9 Plus
3R 32079331 3R 15139985..15140065 1..81 390 98.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14881167..14882551 77..1461 6910 99.9 Plus
3R 31820162 3R 14880816..14880896 1..81 390 98.7 Plus
Blast to na_te.dros performed 2019-03-15 13:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 4442..4484 1043..1001 116 74.4 Minus

GH09123.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:04:05 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10964630..10964706 1..77 100 -> Plus
chr3R 10964982..10966360 78..1456 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:51 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1215 63..1277 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:48 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1215 63..1277 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:56:23 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1215 63..1277 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:39 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1215 63..1277 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:20:09 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1215 63..1277 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:54 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:48 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:56:23 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 28..1483 1..1456 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:39 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1456 1..1456 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:20:09 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 28..1483 1..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:05 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15139985..15140061 1..77 100 -> Plus
3R 15140337..15141715 78..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:05 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15139985..15140061 1..77 100 -> Plus
3R 15140337..15141715 78..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:05 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15139985..15140061 1..77 100 -> Plus
3R 15140337..15141715 78..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:56:23 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10965707..10965783 1..77 100 -> Plus
arm_3R 10966059..10967437 78..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:33 Download gff for GH09123.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14881168..14882546 78..1456 100   Plus
3R 14880816..14880892 1..77 100 -> Plus

GH09123.pep Sequence

Translation from 62 to 1276

> GH09123.pep
MAHSMLKLGMMCGILHLLTFGVIAEDQLKNNTIVVHTPLQNYDQPNLQDY
EECQVNRDNCINVCAGKQSCEDECPVCPDLYVKPLMVQGINDTNIVAPPQ
VPINTTNIIRLTNDINNIIEHQIQNRNEVNVQVNQNVSKVGGRFGLGYTD
KGSCCYVVRLDRECKNEDGRDCRERSRQRICGEKCQARVMLAKIVVQCEA
EDSDRCHETIEYVPRRRRTLQRRTPKATRCHYTGNSWPYFNCGQNPGQNS
DFAQPTRPKTSICEHCLNYPYGYILQNGLPAQCAGCFQGYGAPLMYNPPW
MYNPYYVAYPAFNNIPAIQNNNNGNSGDTSVDKTIADDDDDGWTLCDDIE
KCLDAEYKGSQNSGSPEHLVDDDDYNVSVQRRRRRPSRHHFVRSAYSKRN
RKHN*

GH09123.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17832-PA 389 GF17832-PA 30..388 30..403 975 55.6 Plus
Dana\GF17834-PA 391 GF17834-PA 30..390 30..403 926 54.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16890-PA 406 GG16890-PA 1..405 1..401 1364 70.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17384-PA 414 GH17384-PA 37..354 33..355 844 53.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-PA 404 CG3987-PA 1..404 1..404 2244 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23928-PA 406 GI23928-PA 29..405 31..399 778 45.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22136-PA 406 GL22136-PA 25..406 24..400 1008 59.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17826-PA 406 GA17826-PA 25..406 24..400 1018 59.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24199-PA 412 GM24199-PA 1..412 1..404 1842 86.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18989-PA 412 GD18989-PA 1..412 1..404 1848 87.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24024-PA 430 GJ24024-PA 28..430 31..402 894 47.7 Plus
Dvir\GJ24022-PA 430 GJ24022-PA 28..430 31..402 884 47.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13299-PA 394 GK13299-PA 2..390 14..400 971 52.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24272-PA 412 GE24272-PA 1..412 1..404 1477 74.6 Plus

GH09123.hyp Sequence

Translation from 62 to 1276

> GH09123.hyp
MAHSMLKLGMMCGILHLLTFGVIAEDQLKNNTIVVHTPLQNYDQPNLQDY
EECQVNRDNCINVCAGKQSCEDECPVCPDLYVKPLMVQGINDTNIVAPPQ
VPINTTNIIRLTNDINNIIEHQIQNRNEVNVQVNQNVSKVGGRFGLGYTD
KGSCCYVVRLDRECKNEDGRDCRERSRQRICGEKCQARVMLAKIVVQCEA
EDSDRCHETIEYVPRRRRTLQRRTPKATRCHYTGNSWPYFNCGQNPGQNS
DFAQPTRPKTSICEHCLNYPYGYILQNGLPAQCAGCFQGYGAPLMYNPPW
MYNPYYVAYPAFNNIPAIQNNNNGNSGDTSVDKTIADDDDDGWTLCDDIE
KCLDAEYKGSQNSGSPEHLVDDDDYNVSVQRRRRRPSRHHFVRSAYSKRN
RKHN*

GH09123.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-PA 404 CG3987-PA 1..404 1..404 2244 100 Plus