Clone GH09161 Report

Search the DGRC for GH09161

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:91
Well:61
Vector:pOT2
Associated Gene/TranscriptCG8508-RA
Protein status:GH09161.pep: gold
Preliminary Size:1205
Sequenced Size:992

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8508 2001-01-01 Release 2 assignment
CG8508 2002-06-10 Blastp of sequenced clone
CG8508 2003-01-01 Sim4 clustering to Release 3
CG8508 2008-04-29 Release 5.5 accounting
CG8508 2008-08-15 Release 5.9 accounting
CG8508 2008-12-18 5.12 accounting

Clone Sequence Records

GH09161.complete Sequence

992 bp (992 high quality bases) assembled on 2002-06-10

GenBank Submission: AY060666

> GH09161.complete
ATTATCCCTAAATCCGTACAGGGCAACGATGAGTCTAAAGGATCTCAATC
TGACCAAGGAGCAAATGATCAAGCTTCAGCAGTTGCTGGCACAGGAAATA
GAGGACGAAAGCCAGCAGGAGCGGAATGAGCTATCAAACGATGATTTCAT
AGCCAATGCACTGGATAAAGTGCAAGTTTATGTGGAGGCTGGTAAGCCAG
AGGCTTTTGTCCAGCTCAAAGAACCGCTATTATACAAATTTAAGATTACC
TCAAATGGAGTAGCTACTGGATCTTCGGAATCGGATAAGTTTCAACGCGC
AGACGCCAAGGAAATTGCTCGCTGGAAATCTGACCATGTAATAAATTTGG
ATTGCATTTCAGACGAGGACTACGAGCAGTTAAGCCAAATTCAAACCGAT
GAAAGTACTGGAGAAACCTACATGCTCGTGCCCATTGATATAAACATACT
CATTGACGATACCGAAATAACTCCTGATACTTCCACAAAGCGTATCACCG
AAAATGACGCCTACAATGCGACGGGAGCGGGACACACCATCTATATGCAT
CCCGAACAAGAGGGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAA
ACACGCTTGCCCGGCTCCGCCAGAAGAGCAGACCAACTACGACTACCACA
TGCACACTTTCGAGGTGCCCAAGCTGAGTTTTCCCTTTGAACTCAAGTTT
GGTATTGATACTGATCGATTGGTGGGTGGCAATGTGGATAAATCGGCTGA
GGACTCGGGAAAATCAGATCACGACGACGATCTGGGGGTAGCTACCGAGC
TTCAGGACGTCCTAGAGGATTTAGAGGTATAAAGATCATCTTGCTTTTTA
ACGCCATCAAGGAAATCATTTAGAACAACAAAATTTGTAACTAGCTTTCC
AAGTTAGGTGCCTCTCGTTAACTAAATCTTTGTCTTAAATTATAAATATT
TTATGAAATTATGTACAAGCTAAAAAAAAAAAAAAAAAAAAA

GH09161.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-RA 985 CG8508-RA 15..985 1..971 4855 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9010642..9011612 971..1 4840 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13185522..13186496 975..1 4875 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12926353..12927327 975..1 4875 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:45:07 has no hits.

GH09161.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:46:15 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9010682..9011612 1..931 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:55 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..804 29..832 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:14 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..804 29..832 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:04 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..804 29..832 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:52 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..804 29..832 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:50 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..804 29..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:51:39 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 15..985 1..971 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:14 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 15..985 1..971 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:04 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 15..985 1..971 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:52 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 15..985 1..971 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:50 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
CG8508-RA 1..971 1..971 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:15 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13185526..13186496 1..971 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:15 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13185526..13186496 1..971 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:15 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13185526..13186496 1..971 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:04 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9011248..9012218 1..971 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:52 Download gff for GH09161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12926357..12927327 1..971 100   Minus

GH09161.hyp Sequence

Translation from 1 to 831

> GH09161.hyp
LSLNPYRATMSLKDLNLTKEQMIKLQQLLAQEIEDESQQERNELSNDDFI
ANALDKVQVYVEAGKPEAFVQLKEPLLYKFKITSNGVATGSSESDKFQRA
DAKEIARWKSDHVINLDCISDEDYEQLSQIQTDESTGETYMLVPIDINIL
IDDTEITPDTSTKRITENDAYNATGAGHTIYMHPEQEGHQTGLDRNPQAK
HACPAPPEEQTNYDYHMHTFEVPKLSFPFELKFGIDTDRLVGGNVDKSAE
DSGKSDHDDDLGVATELQDVLEDLEV*

GH09161.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-PA 267 CG8508-PA 1..267 10..276 1388 100 Plus

GH09161.pep Sequence

Translation from 28 to 831

> GH09161.pep
MSLKDLNLTKEQMIKLQQLLAQEIEDESQQERNELSNDDFIANALDKVQV
YVEAGKPEAFVQLKEPLLYKFKITSNGVATGSSESDKFQRADAKEIARWK
SDHVINLDCISDEDYEQLSQIQTDESTGETYMLVPIDINILIDDTEITPD
TSTKRITENDAYNATGAGHTIYMHPEQEGHQTGLDRNPQAKHACPAPPEE
QTNYDYHMHTFEVPKLSFPFELKFGIDTDRLVGGNVDKSAEDSGKSDHDD
DLGVATELQDVLEDLEV*

GH09161.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22340-PA 339 GF22340-PA 49..302 41..242 335 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17076-PA 259 GG17076-PA 1..259 1..263 864 67.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8508-PA 267 CG8508-PA 1..267 1..267 1388 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16567-PA 592 GL16567-PA 23..132 36..147 183 36.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23104-PA 845 GA23104-PA 25..132 38..147 178 39.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25959-PA 269 GM25959-PA 1..268 1..266 1245 88.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20519-PA 269 GD20519-PA 1..268 1..266 1228 87.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18866-PA 223 GJ18866-PA 29..212 40..226 176 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19957-PA 203 GK19957-PA 35..141 40..143 164 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24464-PA 261 GE24464-PA 1..258 1..261 927 69 Plus