Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH09161.complete Sequence
992 bp (992 high quality bases) assembled on 2002-06-10
GenBank Submission: AY060666
> GH09161.complete
ATTATCCCTAAATCCGTACAGGGCAACGATGAGTCTAAAGGATCTCAATC
TGACCAAGGAGCAAATGATCAAGCTTCAGCAGTTGCTGGCACAGGAAATA
GAGGACGAAAGCCAGCAGGAGCGGAATGAGCTATCAAACGATGATTTCAT
AGCCAATGCACTGGATAAAGTGCAAGTTTATGTGGAGGCTGGTAAGCCAG
AGGCTTTTGTCCAGCTCAAAGAACCGCTATTATACAAATTTAAGATTACC
TCAAATGGAGTAGCTACTGGATCTTCGGAATCGGATAAGTTTCAACGCGC
AGACGCCAAGGAAATTGCTCGCTGGAAATCTGACCATGTAATAAATTTGG
ATTGCATTTCAGACGAGGACTACGAGCAGTTAAGCCAAATTCAAACCGAT
GAAAGTACTGGAGAAACCTACATGCTCGTGCCCATTGATATAAACATACT
CATTGACGATACCGAAATAACTCCTGATACTTCCACAAAGCGTATCACCG
AAAATGACGCCTACAATGCGACGGGAGCGGGACACACCATCTATATGCAT
CCCGAACAAGAGGGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAA
ACACGCTTGCCCGGCTCCGCCAGAAGAGCAGACCAACTACGACTACCACA
TGCACACTTTCGAGGTGCCCAAGCTGAGTTTTCCCTTTGAACTCAAGTTT
GGTATTGATACTGATCGATTGGTGGGTGGCAATGTGGATAAATCGGCTGA
GGACTCGGGAAAATCAGATCACGACGACGATCTGGGGGTAGCTACCGAGC
TTCAGGACGTCCTAGAGGATTTAGAGGTATAAAGATCATCTTGCTTTTTA
ACGCCATCAAGGAAATCATTTAGAACAACAAAATTTGTAACTAGCTTTCC
AAGTTAGGTGCCTCTCGTTAACTAAATCTTTGTCTTAAATTATAAATATT
TTATGAAATTATGTACAAGCTAAAAAAAAAAAAAAAAAAAAA
GH09161.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-RA | 985 | CG8508-RA | 15..985 | 1..971 | 4855 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 9010642..9011612 | 971..1 | 4840 | 99.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13185522..13186496 | 975..1 | 4875 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 12926353..12927327 | 975..1 | 4875 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 23:45:07 has no hits.
GH09161.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:46:15 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 9010682..9011612 | 1..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:55 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..804 | 29..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:14 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..804 | 29..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:04 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..804 | 29..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:52 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..804 | 29..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:50 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..804 | 29..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:51:39 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 15..985 | 1..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:14 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 15..985 | 1..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:04 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 15..985 | 1..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:52 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 15..985 | 1..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:50 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8508-RA | 1..971 | 1..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:15 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13185526..13186496 | 1..971 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:15 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13185526..13186496 | 1..971 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:15 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13185526..13186496 | 1..971 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:04 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9011248..9012218 | 1..971 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:52 Download gff for
GH09161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12926357..12927327 | 1..971 | 100 | | Minus |
GH09161.hyp Sequence
Translation from 1 to 831
> GH09161.hyp
LSLNPYRATMSLKDLNLTKEQMIKLQQLLAQEIEDESQQERNELSNDDFI
ANALDKVQVYVEAGKPEAFVQLKEPLLYKFKITSNGVATGSSESDKFQRA
DAKEIARWKSDHVINLDCISDEDYEQLSQIQTDESTGETYMLVPIDINIL
IDDTEITPDTSTKRITENDAYNATGAGHTIYMHPEQEGHQTGLDRNPQAK
HACPAPPEEQTNYDYHMHTFEVPKLSFPFELKFGIDTDRLVGGNVDKSAE
DSGKSDHDDDLGVATELQDVLEDLEV*
GH09161.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-PA | 267 | CG8508-PA | 1..267 | 10..276 | 1388 | 100 | Plus |
GH09161.pep Sequence
Translation from 28 to 831
> GH09161.pep
MSLKDLNLTKEQMIKLQQLLAQEIEDESQQERNELSNDDFIANALDKVQV
YVEAGKPEAFVQLKEPLLYKFKITSNGVATGSSESDKFQRADAKEIARWK
SDHVINLDCISDEDYEQLSQIQTDESTGETYMLVPIDINILIDDTEITPD
TSTKRITENDAYNATGAGHTIYMHPEQEGHQTGLDRNPQAKHACPAPPEE
QTNYDYHMHTFEVPKLSFPFELKFGIDTDRLVGGNVDKSAEDSGKSDHDD
DLGVATELQDVLEDLEV*
GH09161.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF22340-PA | 339 | GF22340-PA | 49..302 | 41..242 | 335 | 31.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17076-PA | 259 | GG17076-PA | 1..259 | 1..263 | 864 | 67.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8508-PA | 267 | CG8508-PA | 1..267 | 1..267 | 1388 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL16567-PA | 592 | GL16567-PA | 23..132 | 36..147 | 183 | 36.2 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23104-PA | 845 | GA23104-PA | 25..132 | 38..147 | 178 | 39.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25959-PA | 269 | GM25959-PA | 1..268 | 1..266 | 1245 | 88.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20519-PA | 269 | GD20519-PA | 1..268 | 1..266 | 1228 | 87.3 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ18866-PA | 223 | GJ18866-PA | 29..212 | 40..226 | 176 | 27.8 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK19957-PA | 203 | GK19957-PA | 35..141 | 40..143 | 164 | 33.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE24464-PA | 261 | GE24464-PA | 1..258 | 1..261 | 927 | 69 | Plus |