Clone GH09173 Report

Search the DGRC for GH09173

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:91
Well:73
Vector:pOT2
Associated Gene/Transcriptkraken-RA
Protein status:GH09173.pep: gold
Preliminary Size:1300
Sequenced Size:1322

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3943 2001-01-01 Release 2 assignment
CG3943 2002-05-31 Blastp of sequenced clone
CG3943 2003-01-01 Sim4 clustering to Release 3
kraken 2008-04-29 Release 5.5 accounting
kraken 2008-08-15 Release 5.9 accounting
kraken 2008-12-18 5.12 accounting

Clone Sequence Records

GH09173.complete Sequence

1322 bp (1322 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118303

> GH09173.complete
CATATCTGTCAATAGCTATTGACAATCGAATTCCGTTGATCGGCAAAACT
TTGCGACTTTAGTTAGTCGCTTTTTGAGATTCCCCGAGGCAGGAGCTCGC
CCGATCCGCGTCCAGCATTACGGAGCACCATTTGCGAGCAGCAATTAGCC
ATGGGCCAGACACGCGTGGCAGCAACAACAGCGGCGCAATCTCCCGCGGC
GGAACTTTCGCCAGAGACAAATGGCCAGACGGAGGAGCCCCTGCAGCTGC
TGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGCGGTGCCCTGGGGAACC
GTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGCAGCCCATCATCGCCCT
GCACGGCTGGCAGGACAACTGCGGCAGCTTCGACAGGCTGTGCCCCCTGC
TACCGGCGGACACCTCCATCCTGGCCATCGATCTGCCCGGGCACGGCAAG
TCGTCGCACTATCCGATGGGCATGCAGTACTTCATCTTCTGGGACGGCAT
ATGCCTGATTCGCCGGATAGTCCGCAAGTATAACTGGAAGAACGTCACTC
TGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTTCATGTACGCGGCCAGC
TTTCCCACGGAGGTGGAGAAGCTGATCAACATCGATATCGCGGGTCCCAC
GGTGCGCGGCACCCAACGGATGGCGGAGGGCACTGGCAGGGCGCTGGACA
AGTTCCTGGACTACGAAACCCTGCCGGAGAGCAAGCAGCCCTGCTACTCG
TACGACGAGATGATCAAACTGGTGCTGGACGCGTACGATGGGTCCGTGGA
TGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGAATGAGGCACAATCCGA
GCAAGAATGGCTACCTCTTTGCCAGGGATCTGAGGCTAAAAGTAAGCCTG
CTGGGCATGTTCACCGCCGAGCAGACGTTGGCCTACGCACGCCAGATTCG
CTGTCGCGTGCTCAACATTCGGGGTATTCCCGGCATGAAGTTCGAGACGC
CACAGGTGTATGCGGATGTGATTGCCACGCTGCGGGAGAATGCCGCGAAG
GTGGTCTACGTTGAGGTGCCCGGCACCCATCATCTGCACCTGGTCACCCC
GGATCGAGTGGCGCCCCACATTATTCGATTCCTGAAGGAGGCGTAAGATT
CCATTACTTAAGTAGACGGCTAGATAGAGAGTACTGTGTGTGTATATAGT
TAGTGTATTTCATCCCACTTGTGATGTACAGTGATCAAAGGTATGTGCCC
GATTTGCACGGCTCTAAATGTTATAACAGATAATAAACACAAATTTATGA
CTAAAAAAAAAAAAAAAAAAAA

GH09173.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RA 1524 kraken-RA 71..1375 1..1305 6525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 853430..854425 307..1302 4860 99.2 Plus
chr2L 23010047 chr2L 852672..852891 1..220 1055 98.6 Plus
chr2L 23010047 chr2L 853078..853164 221..307 435 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854542 307..1305 4995 100 Plus
2L 23513712 2L 852786..853005 1..220 1100 100 Plus
2L 23513712 2L 853192..853278 221..307 435 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854542 307..1305 4995 100 Plus
2L 23513712 2L 852786..853005 1..220 1100 100 Plus
2L 23513712 2L 853192..853278 221..307 435 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:53:02 has no hits.

GH09173.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:49 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 852672..852891 1..220 98 -> Plus
chr2L 853078..853164 221..307 100 -> Plus
chr2L 853431..854425 308..1302 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:29:57 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 151..1146 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:54 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 151..1146 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:50 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 151..1146 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:26:29 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 151..1146 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:57 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 151..1146 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:06:15 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 20..1321 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:54 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 20..1321 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:50 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 19..1320 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:30 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 20..1321 1..1302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:57 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 19..1320 1..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:49 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 852786..853005 1..220 100 -> Plus
2L 853192..853278 221..307 100 -> Plus
2L 853545..854539 308..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:49 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 852786..853005 1..220 100 -> Plus
2L 853192..853278 221..307 100 -> Plus
2L 853545..854539 308..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:49 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 852786..853005 1..220 100 -> Plus
2L 853192..853278 221..307 100 -> Plus
2L 853545..854539 308..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:50 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 852786..853005 1..220 100 -> Plus
arm_2L 853192..853278 221..307 100 -> Plus
arm_2L 853545..854539 308..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:56 Download gff for GH09173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 852786..853005 1..220 100 -> Plus
2L 853192..853278 221..307 100 -> Plus
2L 853545..854539 308..1302 100   Plus

GH09173.pep Sequence

Translation from 150 to 1145

> GH09173.pep
MGQTRVAATTAAQSPAAELSPETNGQTEEPLQLLGEDSWEEFSIAVPWGT
VEAKWWGSKERQPIIALHGWQDNCGSFDRLCPLLPADTSILAIDLPGHGK
SSHYPMGMQYFIFWDGICLIRRIVRKYNWKNVTLLGHSLGGALTFMYAAS
FPTEVEKLINIDIAGPTVRGTQRMAEGTGRALDKFLDYETLPESKQPCYS
YDEMIKLVLDAYDGSVDEPSVRVLMNRGMRHNPSKNGYLFARDLRLKVSL
LGMFTAEQTLAYARQIRCRVLNIRGIPGMKFETPQVYADVIATLRENAAK
VVYVEVPGTHHLHLVTPDRVAPHIIRFLKEA*

GH09173.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15079-PA 331 GF15079-PA 1..328 1..328 1523 85.2 Plus
Dana\GF10275-PA 330 GF10275-PA 34..326 39..330 533 37 Plus
Dana\GF24201-PA 348 GF24201-PA 35..325 39..328 507 36.9 Plus
Dana\GF24932-PA 342 GF24932-PA 4..302 34..330 452 36.7 Plus
Dana\GF24933-PA 344 GF24933-PA 10..305 40..330 416 35.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24750-PA 331 GG24750-PA 1..331 1..331 1708 95.2 Plus
Dere\GG16172-PA 330 GG16172-PA 20..324 23..328 521 35 Plus
Dere\GG13244-PA 349 GG13244-PA 36..327 39..329 504 36.1 Plus
Dere\GG14532-PA 344 GG14532-PA 9..303 39..330 451 33.9 Plus
Dere\GG14531-PA 335 GG14531-PA 4..300 34..330 403 31.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11247-PA 299 GH11247-PA 4..296 34..328 1354 84.1 Plus
Dgri\GH16159-PA 359 GH16159-PA 45..337 38..329 511 36.3 Plus
Dgri\GH16485-PA 353 GH16485-PA 12..312 22..328 401 31.9 Plus
Dgri\GH16488-PA 343 GH16488-PA 4..301 34..329 397 33.1 Plus
Dgri\GH23210-PA 318 GH23210-PA 4..302 34..330 395 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-PB 331 CG3943-PB 1..331 1..331 1752 100 Plus
kraken-PA 331 CG3943-PA 1..331 1..331 1752 100 Plus
CG7632-PA 330 CG7632-PA 25..324 29..328 518 35.7 Plus
CG7632-PB 312 CG7632-PB 15..306 38..328 516 36.1 Plus
CG11309-PF 348 CG11309-PF 37..326 41..329 495 37.3 Plus
CG11309-PE 348 CG11309-PE 37..326 41..329 495 37.3 Plus
CG11309-PD 348 CG11309-PD 37..326 41..329 495 37.3 Plus
CG11309-PC 348 CG11309-PC 37..326 41..329 495 37.3 Plus
CG11309-PB 348 CG11309-PB 37..326 41..329 495 37.3 Plus
CG11309-PA 358 CG11309-PA 47..336 41..329 495 37.3 Plus
CG15879-PA 342 CG15879-PA 6..300 39..329 425 33.2 Plus
CG5707-PA 357 CG5707-PA 24..311 44..328 404 34.5 Plus
CG5707-PC 361 CG5707-PC 28..315 44..328 404 34.5 Plus
CG5707-PB 361 CG5707-PB 28..315 44..328 404 34.5 Plus
CG5704-PB 335 CG5704-PB 4..299 34..329 398 31.8 Plus
CG5704-PA 335 CG5704-PA 4..299 34..329 398 31.8 Plus
CG15820-PA 308 CG15820-PA 7..298 39..329 389 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21853-PA 307 GI21853-PA 1..304 19..328 1382 81.6 Plus
Dmoj\GI12011-PA 336 GI12011-PA 40..332 39..330 531 37.7 Plus
Dmoj\GI13311-PA 352 GI13311-PA 38..329 38..328 489 35.8 Plus
Dmoj\GI12160-PA 342 GI12160-PA 4..302 34..330 431 32.7 Plus
Dmoj\GI12161-PA 343 GI12161-PA 4..301 34..329 401 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19501-PA 186 GL19501-PA 1..185 146..330 895 88.6 Plus
Dper\GL24680-PA 330 GL24680-PA 18..326 22..330 547 36.6 Plus
Dper\GL24589-PA 348 GL24589-PA 35..326 39..329 507 36.1 Plus
Dper\GL24627-PA 331 GL24627-PA 4..300 34..328 427 33.9 Plus
Dper\GL24626-PA 348 GL24626-PA 8..305 38..330 418 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17793-PA 330 GA17793-PA 1..329 1..330 1515 83.7 Plus
Dpse\GA20494-PA 330 GA20494-PA 26..326 30..330 544 37.6 Plus
Dpse\GA10906-PA 348 GA10906-PA 35..326 39..329 507 36.1 Plus
Dpse\GA23368-PA 332 GA23368-PA 4..300 34..328 424 33.6 Plus
Dpse\GA23367-PA 348 GA23367-PA 8..305 38..330 417 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16772-PA 331 GM16772-PA 1..331 1..331 1747 97.3 Plus
Dsec\GM22356-PA 329 GM22356-PA 24..324 29..329 524 35.3 Plus
Dsec\GM26924-PA 355 GM22149-PA 23..333 16..329 506 35.6 Plus
Dsec\GM14139-PA 345 GM14139-PA 9..304 39..330 408 32.3 Plus
Dsec\GM14136-PA 308 GM14136-PA 7..298 39..329 395 32.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23051-PA 331 GD23051-PA 1..331 1..331 1761 98.8 Plus
Dsim\GD14950-PA 330 GD14950-PA 25..324 29..328 526 35.7 Plus
Dsim\GD12125-PA 360 GD12125-PA 47..338 39..329 508 36.7 Plus
Dsim\GD13410-PA 345 GD13410-PA 9..304 39..330 414 32.3 Plus
Dsim\GD13408-PA 335 GD13408-PA 4..300 34..330 399 32 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17799-PA 297 GJ17799-PA 1..294 33..328 1374 83.4 Plus
Dvir\GJ13282-PA 336 GJ13282-PA 40..326 39..325 528 39.4 Plus
Dvir\GJ12081-PA 357 GJ12081-PA 43..335 38..329 489 35.7 Plus
Dvir\GJ11632-PA 343 GJ11632-PA 4..302 34..330 450 35.2 Plus
Dvir\GJ13439-PA 340 GJ13439-PA 9..302 39..330 432 34.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24439-PA 338 GK24439-PA 1..337 1..330 1392 77.4 Plus
Dwil\GK20467-PA 335 GK20467-PA 22..331 20..330 548 37 Plus
Dwil\GK20424-PA 352 GK20424-PA 29..330 33..330 508 36.6 Plus
Dwil\GK12602-PA 346 GK12602-PA 4..302 34..329 408 31.1 Plus
Dwil\GK12598-PA 358 GK12598-PA 23..310 44..328 370 33.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17144-PA 331 GE17144-PA 1..331 1..331 1715 95.5 Plus
Dyak\GE19742-PA 330 GE19742-PA 25..324 29..328 524 35.1 Plus
Dyak\GE23049-PA 330 GE23049-PA 25..324 29..328 524 35.1 Plus
Dyak\GE22964-PA 348 GE22964-PA 35..326 39..329 507 36.7 Plus
Dyak\GE20884-PA 341 GE20884-PA 6..300 39..330 434 33.2 Plus

GH09173.hyp Sequence

Translation from 150 to 1145

> GH09173.hyp
MGQTRVAATTAAQSPAAELSPETNGQTEEPLQLLGEDSWEEFSIAVPWGT
VEAKWWGSKERQPIIALHGWQDNCGSFDRLCPLLPADTSILAIDLPGHGK
SSHYPMGMQYFIFWDGICLIRRIVRKYNWKNVTLLGHSLGGALTFMYAAS
FPTEVEKLINIDIAGPTVRGTQRMAEGTGRALDKFLDYETLPESKQPCYS
YDEMIKLVLDAYDGSVDEPSVRVLMNRGMRHNPSKNGYLFARDLRLKVSL
LGMFTAEQTLAYARQIRCRVLNIRGIPGMKFETPQVYADVIATLRENAAK
VVYVEVPGTHHLHLVTPDRVAPHIIRFLKEA*

GH09173.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-PB 331 CG3943-PB 1..331 1..331 1752 100 Plus
kraken-PA 331 CG3943-PA 1..331 1..331 1752 100 Plus
CG7632-PA 330 CG7632-PA 25..324 29..328 518 35.7 Plus
CG7632-PB 312 CG7632-PB 15..306 38..328 516 36.1 Plus
CG11309-PF 348 CG11309-PF 37..326 41..329 495 37.3 Plus