Clone GH09240 Report

Search the DGRC for GH09240

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:92
Well:40
Vector:pOT2
Associated Gene/Transcriptwol-RA
Protein status:GH09240.pep: gold
Preliminary Size:1300
Sequenced Size:1339

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7870 2001-01-01 Release 2 assignment
CG7870 2002-03-19 Blastp of sequenced clone
CG7870 2003-01-01 Sim4 clustering to Release 3
CG7870 2008-04-29 Release 5.5 accounting
CG7870 2008-08-15 Release 5.9 accounting
CG7870 2008-12-18 5.12 accounting

Clone Sequence Records

GH09240.complete Sequence

1339 bp (1339 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094692

> GH09240.complete
CCCTAATCAGCTGCGGCATTTCGGTCTAAAATTCTTGGAATTAAATACGT
GGCTCTGTTTATCTCGCACAAATTGGAGAAGTAATGTCTGCTGGCAGGTA
GCAGGCGCACCTGTTCATACAAACTAGTTGCTAAAAAAAGCCCTACAATG
TGGACCTGCCTCTGCCAGCTCTGTTTCTATCTACTCTCGACGCTTGCAGT
CGCTGCGCTGTCGATTGCGGCTCTGGTGCTCTACAAGACGAAGCCCTATC
CCAACATCAAGCGGCACAAGGATGAGGAGACCTTCCTGGACCCGCACACC
ATTAAAACAGTGACTTTTCCCAGTCTCGAGGACTCGCCAAGTTTGGAGCT
CAGTGTCATCGTACCAGCTTACAATGAGGAGCAGCGCTTGCCTTCTATGC
TGGACGAGTGCTTGGCCTTTCTGGAACAGAAATCTGCTGGCACTCCCAAT
TTCACATACGAGGTCATCGTGGTCAGTGACGGCAGTCAGGATGCCACCGT
ATCCGTCGCCTTGGGTTACTCGAAAAAGCACGGAGCAGAAAAGGTACGCG
TGCTGGAACTCATCGAAAATCGTGGGAAAGGAGGTGCCGTTCGCATGGGT
ATGCTAAGTGCACGGGGTCGTAATCTGCTCTTCGCTGATGCGGATGGAGC
CACCAAGTTTCCCGACTACGATAAACTGGAGGTGGCCCTCAAGCAATTAG
CTCCCGAATGGCGAGACGATGGCATTGCCATTGGATCGAGAGCACATCTG
GAGAACGATGCGATTGCAACAAGGAGTTTCTTCAGAACAATTTTGATGCA
CGGCTTTCATTTCCTCGTCTGGCTGTTTGCCGTGCGCTCCATTCGCGATA
CCCAGTGTGGCTTCAAGCTGTTCACCCGAACGACGGCCAGGAAACTCTTC
ACCAGTCTGCATGTGGAGCGCTGGGCCTTTGATGTTGAGCTGCTGTACCT
CGCTGAGAATTTGAAGCTACCAATGTCCGAGGTTGCCGTTCGATGGACGG
AGATCGATGGTTCGAAACTGACACCATTTTGGTCGTGGCTGCAAATGGGC
AGGGATTTGTTCATGATCTGGGTGCGATATTTGGTGGGCGCCTGGCGGAT
TGCCTCCATACAGAAGAAGGAAAAGTGATGTGGACTTGGAGGGCATCTCA
TTCCCAATATTAACTAGCATTTTGTGTCGAACTTACTCCGCTGTCGTGCA
TTACCAAAACTCTTTTAACTCTAAACTCTATTTTTGTAGGCCTGATAAAG
TGTAACGAATTCTAGCTAGTTAAGTACTTAAGTACAGTATTTTTTCAAAT
AAAAAATAATTGATTTGAATAAAAAAAAAAAAAAAAAAA

GH09240.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1588 wol-RA 72..1395 1..1324 6620 100 Plus
wol.a 1361 wol.a 430..1361 389..1320 4660 100 Plus
wol.a 1361 wol.a 15..402 1..388 1940 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8300288..8300825 1320..783 2690 100 Minus
chr2L 23010047 chr2L 8300879..8301275 785..389 1985 100 Minus
chr2L 23010047 chr2L 8301701..8301913 213..1 1050 99.5 Minus
chr2L 23010047 chr2L 8301467..8301642 388..213 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301341..8301882 1324..783 2710 100 Minus
2L 23513712 2L 8301936..8302332 785..389 1985 100 Minus
2L 23513712 2L 8302758..8302970 213..1 1065 100 Minus
2L 23513712 2L 8302524..8302699 388..213 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301341..8301882 1324..783 2710 100 Minus
2L 23513712 2L 8301936..8302332 785..389 1985 100 Minus
2L 23513712 2L 8302758..8302970 213..1 1065 100 Minus
2L 23513712 2L 8302524..8302699 388..213 880 100 Minus
Blast to na_te.dros performed 2019-03-16 17:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2011..2063 1267..1320 123 72.2 Plus

GH09240.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:43:12 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8300288..8300822 786..1320 100 <- Minus
chr2L 8300879..8301275 389..785 100 <- Minus
chr2L 8301467..8301641 214..388 100 <- Minus
chr2L 8301701..8301913 1..213 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:30:05 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 1..981 148..1128 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:24 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 1..981 148..1128 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:29 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 1..981 148..1128 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:40 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 1..981 148..1128 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:14 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 1..981 148..1128 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:28 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 14..1333 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:23 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 14..1333 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:29 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 16..1335 1..1320 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:41 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 14..1333 1..1320 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:14 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 16..1335 1..1320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:43:12 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8302758..8302970 1..213 100   Minus
2L 8301345..8301879 786..1320 100 <- Minus
2L 8301936..8302332 389..785 100 <- Minus
2L 8302524..8302698 214..388 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:43:12 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8302758..8302970 1..213 100   Minus
2L 8301345..8301879 786..1320 100 <- Minus
2L 8301936..8302332 389..785 100 <- Minus
2L 8302524..8302698 214..388 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:43:12 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8302758..8302970 1..213 100   Minus
2L 8301345..8301879 786..1320 100 <- Minus
2L 8301936..8302332 389..785 100 <- Minus
2L 8302524..8302698 214..388 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:29 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301345..8301879 786..1320 100 <- Minus
arm_2L 8301936..8302332 389..785 100 <- Minus
arm_2L 8302524..8302698 214..388 100 <- Minus
arm_2L 8302758..8302970 1..213 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:25 Download gff for GH09240.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8301345..8301879 786..1320 100 <- Minus
2L 8301936..8302332 389..785 100 <- Minus
2L 8302524..8302698 214..388 100 <- Minus
2L 8302758..8302970 1..213 100   Minus

GH09240.pep Sequence

Translation from 147 to 1127

> GH09240.pep
MWTCLCQLCFYLLSTLAVAALSIAALVLYKTKPYPNIKRHKDEETFLDPH
TIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTP
NFTYEVIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRM
GMLSARGRNLLFADADGATKFPDYDKLEVALKQLAPEWRDDGIAIGSRAH
LENDAIATRSFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKL
FTSLHVERWAFDVELLYLAENLKLPMSEVAVRWTEIDGSKLTPFWSWLQM
GRDLFMIWVRYLVGAWRIASIQKKEK*

GH09240.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15267-PA 326 GF15267-PA 1..326 1..326 1540 86.5 Plus
Dana\GF15626-PA 241 GF15626-PA 5..238 65..308 172 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23458-PA 326 GG23458-PA 1..326 1..326 1683 96 Plus
Dere\GG21624-PA 241 GG21624-PA 9..238 69..308 165 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10179-PA 326 GH10179-PA 1..326 1..326 1334 76.4 Plus
Dgri\GH10181-PA 236 GH10181-PA 80..235 128..323 644 64.3 Plus
Dgri\GH13502-PA 241 GH13502-PA 5..238 65..308 176 24.1 Plus
Dgri\GH10504-PA 241 GH10504-PA 5..238 65..308 176 24.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
wol-PA 326 CG7870-PA 1..326 1..326 1698 100 Plus
CG10166-PA 241 CG10166-PA 9..214 69..285 165 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14242-PA 326 GI14242-PA 1..326 1..326 1310 76.4 Plus
Dmoj\GI10202-PA 241 GI10202-PA 9..238 69..308 175 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19385-PA 344 GL19385-PA 1..326 1..326 1380 80.7 Plus
Dper\GL25681-PA 241 GL25681-PA 9..238 69..308 159 24.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20647-PA 326 GA20647-PA 1..326 1..326 1371 80.1 Plus
Dpse\GA10126-PA 241 GA10126-PA 9..238 69..308 160 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13089-PA 326 GM13089-PA 1..326 1..326 1719 98.5 Plus
Dsec\GM17002-PA 241 GM17002-PA 9..238 69..308 166 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22423-PA 326 GD22423-PA 1..326 1..326 1720 98.5 Plus
Dsim\GD21748-PA 241 GD21748-PA 9..238 69..308 166 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20570-PA 326 GJ20570-PA 16..326 15..326 1350 79.8 Plus
Dvir\GJ18012-PA 241 GJ18012-PA 9..238 69..308 181 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23854-PA 326 GK23854-PA 1..326 1..326 1385 79.1 Plus
Dwil\GK14776-PA 241 GK14776-PA 3..238 63..308 163 24.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11069-PA 326 GE11069-PA 1..326 1..326 1692 96.3 Plus
Dyak\GE12644-PA 241 GE12644-PA 9..238 69..308 166 25.7 Plus

GH09240.hyp Sequence

Translation from 147 to 1127

> GH09240.hyp
MWTCLCQLCFYLLSTLAVAALSIAALVLYKTKPYPNIKRHKDEETFLDPH
TIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTP
NFTYEVIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRM
GMLSARGRNLLFADADGATKFPDYDKLEVALKQLAPEWRDDGIAIGSRAH
LENDAIATRSFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKL
FTSLHVERWAFDVELLYLAENLKLPMSEVAVRWTEIDGSKLTPFWSWLQM
GRDLFMIWVRYLVGAWRIASIQKKEK*

GH09240.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
wol-PA 326 CG7870-PA 1..326 1..326 1698 100 Plus
CG10166-PA 241 CG10166-PA 9..214 69..285 165 26.4 Plus