Clone GH09271 Report

Search the DGRC for GH09271

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:92
Well:71
Vector:pOT2
Associated Gene/Transcriptkcc-RB
Protein status:GH09271.pep: gold
Preliminary Size:3363
Sequenced Size:3597

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5594 2001-01-01 Release 2 assignment
CG2768 2001-01-01 Release 2 assignment
CG5594 2002-05-14 Blastp of sequenced clone
CG5594 2003-01-01 Sim4 clustering to Release 3
CG5594 2008-04-29 Release 5.5 accounting
CG5594 2008-08-15 Release 5.9 accounting
CG5594 2008-12-18 5.12 accounting

Clone Sequence Records

GH09271.complete Sequence

3597 bp (3597 high quality bases) assembled on 2002-05-14

GenBank Submission: AY118761

> GH09271.complete
GGCAACATAATTTTTATTCGGCCGAATACCAACAGTTTTCTTAGTTTTTC
TATTAATCCGAACGAAAAGTAGCATACATCTGAGCGTTTTCGCTCGCCTA
AAATAACTTTAGAAGGAGTCTTCTTTCGCATAATACAAAAAACCTAAAAA
AAAATACGAAAAACGGGAAAACATGAGAAACCAGTTCTTTTTGAGCACCT
TTAACAAATAACATACTTTAAACAATCGACGAAATTCTAACAATAATCAA
ATACATGAATACAATGTTACCTAATTTTAAGTGAACATAGTGCAATCTAA
AGCAAGGGTTTGAAACCAAACAACCAACGTTAACATGCAAAGTAACAGTG
CAAAAGATGATTCGGATGAAATGGAAATAATACCATCCGAACACAATGGT
ACAGTTCACGAAACCAAAAATGAAGACTCAGGTGATATCCACAGGGCGGA
GGAGAACCAGAAGTCCAGCATCGACCCAAATCTATATCTGTACGACGATG
ATTTGGAGACCAGGCCCCATATATCAACGTTCATTTCATCAATTGCCAAT
TATGAGAACACGATACCAGCGGCCACCGATCCCGATGCAAAGCCGGCAGC
TCCATCGGCTCGAATGGGTACCCTAATTGGAGTGTTCTTGCCATGCATTC
AAAACATCTTTGGTGTCATATTGTTCATTCGGTTAACATGGGTTGTTGGA
ACGGCTGGCGCCGTGTGTGGATTCCTGATTGTTCTGACCTGCTGCTGTGT
GACCATGCTAACCGCGATCTCGATGTCGGCCATTGCAACGAACGGGGTGG
TTCCGGCGGGCGGGAGTTACTTCATGATATCACGATCCCTGGGCCCTGAA
TTCGGCGGAGCGGTGGGAATGTTGTTCTATACGGGCACCACGCTAGCAGC
GGCGATGTACATCGTTGGTGCCGTGGAAATCGTATTGACATACATGGCGC
CGTGGGCATCGATATTTGGGGACTTCACCAAGGACGCTGACGCGATGTAC
AACAATTTCAGGGTCTACGGCACTTTGCTGCTCATCTTTATGGGTCTCAT
TGTGTTCCTGGGCGTGAAATTCGTCAATAAGTTCGCGACGGTGGCCCTGG
CCTGCGTCATCCTTTCGATAATAGCGGTGTATGTGGGAATATTTGACAAT
ATCCATGGCAACGAAAAGCTATACATGTGTGTTCTGGGAAAACGACTCTT
GAAGGATATCCCGCTGGAGAATTGCACAAAGGAAGACTCCTTCTTACGCG
ACATATACTGCCCAGATGGTAAATGCGAGGAATACTACCTGGCCAATAAC
GTGACCAAAGTCAAGGGCATCAAGGGTTTGGCCAGTGGCGTGTTCTACGA
CAACATCTTCCCTTCGTTCCTGGAGAAGGGCCAGTTCATATCCTACGGCA
AGAGTGCAATTGACATTGAGAACACTAGTGGAGAGTCATACAACCAGATC
ATGGCCGACATTACCACGTCGTTCACCCTTCTTATCGGCATCTTCTTCCC
ATCGGTCACAGGCATCATGGCTGGATCCAATCGATCGGGCGACCTGGCTG
ACGCCCAGAAGAGCATACCCATCGGAACGATATGTGCCATTCTGACCACC
AGCACAGTCTACTTGTCCAGCGTTATGTTCTTCGCCGGCACAGTGGACAA
TCTCCTGTTGAGGGACAAATTCGGTCAGTCTATTGGTGGCAAGCTGGTGG
TGGCCAATATTGCCTGGCCAAATCAGTGGGTCATTCTGATTGGCTCCTTC
CTCTCCACCTTGGGCGCTGGTCTGCAGAGTTTGACTGGAGCACCCCGACT
GCTGCAGGCGATTGCGAGGGATGAGATCATCCCCTTCCTGGCTCCATTTG
CCAAGTCTTCGAAGCGTGGCGAACCCACCCGTGCGCTGCTCCTGACCATT
GTCATTTGCCAGTGCGGCATCCTGTTGGGCAACGTGGACTTGCTGGCTCC
TCTGCTGTCCATGTTCTTCCTCATGTGCTACGGCTTTGTCAACCTGGCCT
GCGCTGTGCAAACCCTGCTGAGGACTCCCAACTGGAGACCGCGCTTCAAG
TTCTACCACTGGAGCTTGTCGCTCATCGGCCTGACGCTGTGCATATCAGT
CATGATCATGACTTCCTGGTATTTCGCACTGATTGCTATGGGAATGGCCA
TCATTATCTACAAATACATAGAGTACCGCGGTGCTGAGAAGGAGTGGGGT
GATGGCATTCGTGGAATGGCCCTGACCGCCGCCAGGTACTCGCTACTCCG
TCTGGAGGAAGGCCCACCGCATACGAAAAATTGGCGTCCCCAAATTTTGG
TGCTTTCGAAGCTCAACGACAACCTCTTGCCAAAATACAGGAAGATATTC
TCCTTTGCCACCCAGCTGAAAGCTGGCAAGGGATTGACGATTTGTGTGTC
TGTGATAAAGGGCGACCACACTAAGATCACTAACAAAGCCGTGGATGCGA
AGGCCACGCTGCGCAAGTACATGACCGACGAGAAGGTGAAGGGCTTCTGT
GATGTCCTGGTAGCCCAGCAGATTGGCGAGGGCCTCAGCTCAGTCATCCA
AACCATCGGACTGGGGGGCATGAAGCCCAACACAGTCATCATCGGATGGC
CGTACAGCTGGCGACAGGAGGGCAGGAACAGCTGGAAGACCTTCATCCAA
ACGGTCCGCACGGTGGCCGCCTGCCACATGGCCCTCATGGTGCCCAAGGG
CATCAACTTCTATCCAGAATCAAACCACAAAATCGGTGGTAACATTGATA
TCTGGTGGATTGTCCACGACGGTGGTCTGCTCATGTTGCTGCCCTTCCTG
CTGAAGCAACATCGCACCTGGCGCAATTGCAAGCTAAGGATCTTCACAGT
TGCTCAAATCGAGGACAACTCGATTCAAATGAAGAAGGATCTAAAGACAT
TCCTCTACCATCTTCGAATCGAGGCCGATGTTGAAGTTGTTGAGATGAAC
AACAGCGATATTTCCGCTTATACCTACGAGCGGACCCTGATGATGGAACA
GCGTAATCAGATGCTGAGAGCATTAGGCTTAAATAAGAAAGAAAACTCCA
AAGTGGATTCTCAAAACGACGAGAAACGTAACTCAATTGATTTGGATGGT
CCCGAGAACGCGGACACACCCGAAACTACTTCTAACAAGGATGAATCGAC
AGAGAAAGCCGACGGAGACTTCAAGTCCAGTGTGAAACCGGATGAGTTCA
ACGTTCGTCGCATGCACACAGCAATAAAACTAAACGAGGTTATTGTAGAA
AAGTCACAGGACGCCCAGTTGGTCATAATGAATCTACCTGGACCACCTAG
GGAAGTGAGAGCGGAGCGTGAAAGAAATTATATGGAATTTCTGGAGGTAT
TAACAGAGGGCCTTGAAAAAGTGTTAATGGTTCGCGGAGGAGGCCGAGAA
GTTATAACAATTTACTCTTAAGAGCATTAATCGCTCAGTTTTATAAGAGT
TCGCAACACTAGACAAGTTTAAGAATCAATCAAATTTTTAAAGAAGGTTA
TTAATTTGTTATATTCAATCATATGTCCAAATATTTTATTTTTACGTAAA
TAAAATATCAAAAAATTGTAACAATAAGAAAAAAAAAAAAAAAAAAA

GH09271.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5594.o 3659 CG5594.o 314..3631 263..3580 16590 100 Plus
CG5594.b 3665 CG5594.b 322..3637 265..3580 16580 100 Plus
CG5594.i 3758 CG5594.i 322..3113 265..3056 13960 100 Plus
CG5594.i 3758 CG5594.i 3206..3730 3056..3580 2625 100 Plus
CG5594.i 3758 CG5594.i 35..299 1..265 1325 100 Plus
CG5594.b 3665 CG5594.b 35..299 1..265 1325 100 Plus
CG5594.o 3659 CG5594.o 35..298 1..264 1320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19808007..19808370 2181..2544 1820 100 Plus
chr2R 21145070 chr2R 19796603..19796866 1..264 1320 100 Plus
chr2R 21145070 chr2R 19799801..19800061 1669..1929 1305 100 Plus
chr2R 21145070 chr2R 19800121..19800374 1928..2181 1270 100 Plus
chr2R 21145070 chr2R 19810860..19811108 3330..3578 1245 100 Plus
chr2R 21145070 chr2R 19799310..19799530 1292..1512 1105 100 Plus
chr2R 21145070 chr2R 19808684..19808899 2732..2947 1080 100 Plus
chr2R 21145070 chr2R 19797718..19797914 424..620 985 100 Plus
chr2R 21145070 chr2R 19808435..19808621 2545..2731 935 100 Plus
chr2R 21145070 chr2R 19797434..19797594 265..425 805 100 Plus
chr2R 21145070 chr2R 19799583..19799741 1510..1668 795 100 Plus
chr2R 21145070 chr2R 19810658..19810797 3190..3329 700 100 Plus
chr2R 21145070 chr2R 19810457..19810596 3055..3194 685 99.3 Plus
chr2R 21145070 chr2R 19798230..19798364 617..751 675 100 Plus
chr2R 21145070 chr2R 19798939..19799069 1043..1173 655 100 Plus
chr2R 21145070 chr2R 19799129..19799247 1174..1292 595 100 Plus
chr2R 21145070 chr2R 19808964..19809073 2947..3056 550 100 Plus
chr2R 21145070 chr2R 19798771..19798879 937..1045 545 100 Plus
chr2R 21145070 chr2R 19798574..19798677 834..937 520 100 Plus
chr2R 21145070 chr2R 19798426..19798509 751..834 420 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23921964..23922327 2181..2544 1820 100 Plus
2R 25286936 2R 23910560..23910823 1..264 1320 100 Plus
2R 25286936 2R 23913758..23914018 1669..1929 1305 100 Plus
2R 25286936 2R 23914078..23914331 1928..2181 1270 100 Plus
2R 25286936 2R 23924818..23925068 3330..3580 1255 100 Plus
2R 25286936 2R 23913267..23913487 1292..1512 1105 100 Plus
2R 25286936 2R 23922641..23922856 2732..2947 1080 100 Plus
2R 25286936 2R 23911675..23911871 424..620 985 100 Plus
2R 25286936 2R 23922392..23922578 2545..2731 935 100 Plus
2R 25286936 2R 23911391..23911551 265..425 805 100 Plus
2R 25286936 2R 23913540..23913698 1510..1668 795 100 Plus
2R 25286936 2R 23924616..23924755 3190..3329 700 100 Plus
2R 25286936 2R 23924415..23924554 3055..3194 685 99.3 Plus
2R 25286936 2R 23912187..23912321 617..751 675 100 Plus
2R 25286936 2R 23912896..23913026 1043..1173 655 100 Plus
2R 25286936 2R 23913086..23913204 1174..1292 595 100 Plus
2R 25286936 2R 23922921..23923030 2947..3056 550 100 Plus
2R 25286936 2R 23912728..23912836 937..1045 545 100 Plus
2R 25286936 2R 23912531..23912634 834..937 520 100 Plus
2R 25286936 2R 23912383..23912466 751..834 420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23923163..23923526 2181..2544 1820 100 Plus
2R 25260384 2R 23911759..23912022 1..264 1320 100 Plus
2R 25260384 2R 23914957..23915217 1669..1929 1305 100 Plus
2R 25260384 2R 23915277..23915530 1928..2181 1270 100 Plus
2R 25260384 2R 23926017..23926267 3330..3580 1255 100 Plus
2R 25260384 2R 23914466..23914686 1292..1512 1105 100 Plus
2R 25260384 2R 23923840..23924055 2732..2947 1080 100 Plus
2R 25260384 2R 23912874..23913070 424..620 985 100 Plus
2R 25260384 2R 23923591..23923777 2545..2731 935 100 Plus
2R 25260384 2R 23912590..23912750 265..425 805 100 Plus
2R 25260384 2R 23914739..23914897 1510..1668 795 100 Plus
2R 25260384 2R 23925815..23925954 3190..3329 700 100 Plus
2R 25260384 2R 23925614..23925753 3055..3194 685 99.2 Plus
2R 25260384 2R 23913386..23913520 617..751 675 100 Plus
2R 25260384 2R 23914095..23914225 1043..1173 655 100 Plus
2R 25260384 2R 23914285..23914403 1174..1292 595 100 Plus
2R 25260384 2R 23924120..23924229 2947..3056 550 100 Plus
2R 25260384 2R 23913927..23914035 937..1045 545 100 Plus
2R 25260384 2R 23913730..23913833 834..937 520 100 Plus
2R 25260384 2R 23913582..23913665 751..834 420 100 Plus
Blast to na_te.dros performed 2019-03-16 09:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 2316..2357 1135..1176 120 76.2 Plus

GH09271.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:54:11 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19798575..19798677 835..937 100 -> Plus
chr2R 19798772..19798877 938..1043 100 -> Plus
chr2R 19798940..19799069 1044..1173 100 -> Plus
chr2R 19799129..19799247 1174..1292 100 -> Plus
chr2R 19798427..19798509 752..834 100 -> Plus
chr2R 19796603..19796866 1..264 100 -> Plus
chr2R 19797434..19797594 265..425 100 -> Plus
chr2R 19797720..19797911 426..617 100 -> Plus
chr2R 19798231..19798364 618..751 100 -> Plus
chr2R 19799311..19799529 1293..1511 100 -> Plus
chr2R 19799585..19799741 1512..1668 100 -> Plus
chr2R 19799801..19800060 1669..1928 100 -> Plus
chr2R 19800122..19800374 1929..2181 100 -> Plus
chr2R 19808008..19808370 2182..2544 100 -> Plus
chr2R 19808435..19808621 2545..2731 100 -> Plus
chr2R 19808684..19808899 2732..2947 100 -> Plus
chr2R 19808965..19809072 2948..3055 100 -> Plus
chr2R 19810458..19810591 3056..3189 100 -> Plus
chr2R 19810658..19810797 3190..3329 100 -> Plus
chr2R 19810860..19811108 3330..3578 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:35:15 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RB 1..3087 335..3421 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:28 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RB 1..3087 335..3421 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:50 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RB 1..3087 335..3421 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:07 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RB 1..3087 335..3421 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:17 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RB 1..3087 335..3421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:35:15 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RB 35..3612 1..3578 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:28 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RB 35..3612 1..3578 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:50 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RB 1..3528 51..3578 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:07 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
CG5594-RB 35..3612 1..3578 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:17 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
kcc-RB 1..3528 51..3578 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:11 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23912729..23912834 938..1043 100 -> Plus
2R 23912897..23913026 1044..1173 100 -> Plus
2R 23913086..23913204 1174..1292 100 -> Plus
2R 23913268..23913486 1293..1511 100 -> Plus
2R 23913542..23913698 1512..1668 100 -> Plus
2R 23913758..23914017 1669..1928 100 -> Plus
2R 23912384..23912466 752..834 100 -> Plus
2R 23912532..23912634 835..937 100 -> Plus
2R 23910560..23910823 1..264 100 -> Plus
2R 23911391..23911551 265..425 100 -> Plus
2R 23911677..23911868 426..617 100 -> Plus
2R 23912188..23912321 618..751 100 -> Plus
2R 23914079..23914331 1929..2181 100 -> Plus
2R 23921965..23922327 2182..2544 100 -> Plus
2R 23922392..23922578 2545..2731 100 -> Plus
2R 23922641..23922856 2732..2947 100 -> Plus
2R 23922922..23923029 2948..3055 100 -> Plus
2R 23924416..23924549 3056..3189 100 -> Plus
2R 23924616..23924755 3190..3329 100 -> Plus
2R 23924818..23925066 3330..3578 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:11 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23912729..23912834 938..1043 100 -> Plus
2R 23912897..23913026 1044..1173 100 -> Plus
2R 23913086..23913204 1174..1292 100 -> Plus
2R 23913268..23913486 1293..1511 100 -> Plus
2R 23913542..23913698 1512..1668 100 -> Plus
2R 23913758..23914017 1669..1928 100 -> Plus
2R 23912384..23912466 752..834 100 -> Plus
2R 23912532..23912634 835..937 100 -> Plus
2R 23910560..23910823 1..264 100 -> Plus
2R 23911391..23911551 265..425 100 -> Plus
2R 23911677..23911868 426..617 100 -> Plus
2R 23912188..23912321 618..751 100 -> Plus
2R 23914079..23914331 1929..2181 100 -> Plus
2R 23921965..23922327 2182..2544 100 -> Plus
2R 23922392..23922578 2545..2731 100 -> Plus
2R 23922641..23922856 2732..2947 100 -> Plus
2R 23922922..23923029 2948..3055 100 -> Plus
2R 23924416..23924549 3056..3189 100 -> Plus
2R 23924616..23924755 3190..3329 100 -> Plus
2R 23924818..23925066 3330..3578 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:11 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23912729..23912834 938..1043 100 -> Plus
2R 23912897..23913026 1044..1173 100 -> Plus
2R 23913086..23913204 1174..1292 100 -> Plus
2R 23913268..23913486 1293..1511 100 -> Plus
2R 23913542..23913698 1512..1668 100 -> Plus
2R 23913758..23914017 1669..1928 100 -> Plus
2R 23912384..23912466 752..834 100 -> Plus
2R 23912532..23912634 835..937 100 -> Plus
2R 23910560..23910823 1..264 100 -> Plus
2R 23911391..23911551 265..425 100 -> Plus
2R 23911677..23911868 426..617 100 -> Plus
2R 23912188..23912321 618..751 100 -> Plus
2R 23914079..23914331 1929..2181 100 -> Plus
2R 23921965..23922327 2182..2544 100 -> Plus
2R 23922392..23922578 2545..2731 100 -> Plus
2R 23922641..23922856 2732..2947 100 -> Plus
2R 23922922..23923029 2948..3055 100 -> Plus
2R 23924416..23924549 3056..3189 100 -> Plus
2R 23924616..23924755 3190..3329 100 -> Plus
2R 23924818..23925066 3330..3578 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:50 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19801065..19801221 1512..1668 100 -> Plus
arm_2R 19800791..19801009 1293..1511 100 -> Plus
arm_2R 19800420..19800549 1044..1173 100 -> Plus
arm_2R 19800609..19800727 1174..1292 100 -> Plus
arm_2R 19798083..19798346 1..264 100 -> Plus
arm_2R 19798914..19799074 265..425 100 -> Plus
arm_2R 19799200..19799391 426..617 100 -> Plus
arm_2R 19799711..19799844 618..751 100 -> Plus
arm_2R 19799907..19799989 752..834 100 -> Plus
arm_2R 19800055..19800157 835..937 100 -> Plus
arm_2R 19800252..19800357 938..1043 100 -> Plus
arm_2R 19801281..19801540 1669..1928 100 -> Plus
arm_2R 19801602..19801854 1929..2181 100 -> Plus
arm_2R 19809488..19809850 2182..2544 100 -> Plus
arm_2R 19809915..19810101 2545..2731 100 -> Plus
arm_2R 19810164..19810379 2732..2947 100 -> Plus
arm_2R 19810445..19810552 2948..3055 100 -> Plus
arm_2R 19811939..19812072 3056..3189 100 -> Plus
arm_2R 19812139..19812278 3190..3329 100 -> Plus
arm_2R 19812341..19812589 3330..3578 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:31 Download gff for GH09271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23915296..23915548 1929..2181 100 -> Plus
2R 23923182..23923544 2182..2544 100 -> Plus
2R 23923609..23923795 2545..2731 100 -> Plus
2R 23923858..23924073 2732..2947 100 -> Plus
2R 23924139..23924246 2948..3055 100 -> Plus
2R 23925633..23925766 3056..3189 100 -> Plus
2R 23925833..23925972 3190..3329 100 -> Plus
2R 23926035..23926283 3330..3578 100   Plus
2R 23913601..23913683 752..834 100 -> Plus
2R 23913749..23913851 835..937 100 -> Plus
2R 23913946..23914051 938..1043 100 -> Plus
2R 23914114..23914243 1044..1173 100 -> Plus
2R 23914303..23914421 1174..1292 100 -> Plus
2R 23914485..23914703 1293..1511 100 -> Plus
2R 23914759..23914915 1512..1668 100 -> Plus
2R 23914975..23915234 1669..1928 100 -> Plus
2R 23911777..23912040 1..264 100 -> Plus
2R 23912608..23912768 265..425 100 -> Plus
2R 23912894..23913085 426..617 100 -> Plus
2R 23913405..23913538 618..751 100 -> Plus

GH09271.pep Sequence

Translation from 334 to 3420

> GH09271.pep
MQSNSAKDDSDEMEIIPSEHNGTVHETKNEDSGDIHRAEENQKSSIDPNL
YLYDDDLETRPHISTFISSIANYENTIPAATDPDAKPAAPSARMGTLIGV
FLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLTCCCVTMLTAISMSAI
ATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGTTLAAAMYIVGAVEIV
LTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIFMGLIVFLGVKFVNKF
ATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLGKRLLKDIPLENCTKE
DSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASGVFYDNIFPSFLEKGQ
FISYGKSAIDIENTSGESYNQIMADITTSFTLLIGIFFPSVTGIMAGSNR
SGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAGTVDNLLLRDKFGQSI
GGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTGAPRLLQAIARDEIIP
FLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVDLLAPLLSMFFLMCYG
FVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTLCISVMIMTSWYFALI
AMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARYSLLRLEEGPPHTKNW
RPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLTICVSVIKGDHTKITN
KAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLSSVIQTIGLGGMKPNT
VIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALMVPKGINFYPESNHKI
GGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLRIFTVAQIEDNSIQMK
KDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTLMMEQRNQMLRALGLN
KKENSKVDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSV
KPDEFNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYM
EFLEVLTEGLEKVLMVRGGGREVITIYS*

GH09271.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12875-PA 1058 GF12875-PA 1..1058 1..1028 5317 94 Plus
Dana\GF24985-PA 1184 GF24985-PA 205..857 93..812 851 31.6 Plus
Dana\GF17705-PA 1066 GF17705-PA 103..774 60..792 788 28.2 Plus
Dana\GF14838-PA 931 GF14838-PA 53..895 86..930 654 25.9 Plus
Dana\GF21265-PA 717 GF21265-PA 96..459 94..555 400 26.8 Plus
Dana\GF24985-PA 1184 GF24985-PA 984..1184 791..1028 220 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22903-PA 1074 GG22903-PA 20..1074 7..1028 5311 94.9 Plus
Dere\GG21702-PA 941 GG21702-PA 58..932 87..1018 632 24.7 Plus
Dere\GG13837-PA 1177 GG13837-PA 403..870 355..812 595 31.4 Plus
Dere\GG10986-PA 1068 GG10986-PA 342..776 376..792 528 30.7 Plus
Dere\GG12705-PA 699 GG12705-PA 92..454 94..555 393 26.1 Plus
Dere\GG10986-PA 1068 GG10986-PA 24..314 4..278 320 28.4 Plus
Dere\GG13837-PA 1177 GG13837-PA 132..403 3..285 304 33.8 Plus
Dere\GG13837-PA 1177 GG13837-PA 977..1177 791..1028 214 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20188-PA 1066 GH20188-PA 30..1066 22..1028 5009 90.8 Plus
Dgri\GH16072-PA 1162 GH16072-PA 198..837 93..791 830 31.3 Plus
Dgri\GH10529-PA 946 GH10529-PA 59..932 87..931 651 26.3 Plus
Dgri\GH18994-PA 1077 GH18994-PA 357..784 383..792 533 31.4 Plus
Dgri\GH11901-PA 715 GH11901-PA 90..453 94..555 391 26.8 Plus
Dgri\GH18994-PA 1077 GH18994-PA 112..323 60..279 336 34.5 Plus
Dgri\GH16072-PA 1162 GH16072-PA 964..1162 791..1028 224 25.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
kcc-PB 1028 CG5594-PB 1..1028 1..1028 5328 100 Plus
kcc-PC 1059 CG5594-PC 1..1059 1..1028 5286 97.1 Plus
kcc-PG 1077 CG5594-PG 1..1077 1..1028 5268 95.5 Plus
kcc-PA 1043 CG5594-PA 20..1043 7..1028 5182 97.9 Plus
kcc-PD 1074 CG5594-PD 20..1074 7..1028 5140 95.1 Plus
kcc-PE 1074 CG5594-PE 20..1074 7..1028 5140 95.1 Plus
kcc-PF 1066 CG5594-PF 30..1066 22..1028 5133 96.3 Plus
Ncc69-PG 1171 CG4357-PG 125..864 2..812 876 29.3 Plus
Ncc69-PA 1171 CG4357-PA 125..864 2..812 876 29.3 Plus
Ncc69-PF 1191 CG4357-PF 125..864 2..812 876 29.3 Plus
Ncc69-PD 1191 CG4357-PD 125..864 2..812 876 29.3 Plus
Ncc69-PC 1191 CG4357-PC 125..864 2..812 876 29.3 Plus
Ncc69-PE 1207 CG4357-PE 125..864 2..812 876 29.3 Plus
NKCC-PA 995 CG31547-PA 32..703 60..792 687 26.5 Plus
NKCC-PB 1068 CG31547-PB 105..776 60..792 687 26.5 Plus
CG10413-PB 941 CG10413-PB 58..932 87..1018 649 24.8 Plus
CG10413-PA 941 CG10413-PA 58..932 87..1018 649 24.8 Plus
CG12773-PB 711 CG12773-PB 92..453 95..555 410 26 Plus
CG12773-PC 712 CG12773-PC 93..454 95..555 410 26 Plus
CG12773-PA 712 CG12773-PA 93..454 95..555 410 26 Plus
Ncc69-PG 1171 CG4357-PG 981..1171 804..1028 204 25.7 Plus
Ncc69-PA 1171 CG4357-PA 981..1171 804..1028 204 25.7 Plus
Ncc69-PF 1191 CG4357-PF 1001..1191 804..1028 204 25.7 Plus
Ncc69-PD 1191 CG4357-PD 1001..1191 804..1028 204 25.7 Plus
Ncc69-PC 1191 CG4357-PC 1001..1191 804..1028 204 25.7 Plus
Ncc69-PE 1207 CG4357-PE 1017..1207 804..1028 204 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20717-PA 1066 GI20717-PA 37..1066 30..1028 4921 89.8 Plus
Dmoj\GI17197-PA 947 GI17197-PA 63..938 87..1018 658 25.4 Plus
Dmoj\GI24495-PA 1074 GI24495-PA 346..780 376..792 534 31.2 Plus
Dmoj\GI12335-PA 1112 GI12335-PA 373..789 321..791 469 27.4 Plus
Dmoj\GI15632-PA 714 GI15632-PA 90..453 94..555 378 26 Plus
Dmoj\GI24495-PA 1074 GI24495-PA 109..318 60..278 324 34.7 Plus
Dmoj\GI12335-PA 1112 GI12335-PA 111..308 2..204 306 37.3 Plus
Dmoj\GI12335-PA 1112 GI12335-PA 924..1112 804..1028 212 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11178-PA 1059 GL11178-PA 1..1059 1..1028 5209 92.3 Plus
Dper\GL22161-PA 1062 GL22161-PA 99..770 60..792 766 28.5 Plus
Dper\GL24962-PA 942 GL24962-PA 119..693 3..640 680 31.3 Plus
Dper\GL18742-PA 630 GL18742-PA 1..621 395..1018 441 24.9 Plus
Dper\GL14385-PA 719 GL14385-PA 90..453 94..555 396 26 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18994-PA 1059 GA18994-PA 1..1059 1..1028 5209 92.3 Plus
Dpse\GA18131-PA 1187 GA18131-PA 121..843 3..791 850 30.2 Plus
Dpse\GA16316-PA 1062 GA16316-PA 99..770 60..792 774 28.7 Plus
Dpse\GA16316-PB 995 GA16316-PB 32..703 60..792 772 28.7 Plus
Dpse\GA10302-PA 941 GA10302-PA 57..932 86..1018 696 25.6 Plus
Dpse\GA18131-PA 1187 GA18131-PA 987..1187 791..1028 221 25.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16063-PA 1074 GM16063-PA 20..1074 7..1028 5314 95 Plus
Dsec\GM24663-PA 1171 GM24663-PA 125..864 2..812 728 29.2 Plus
Dsec\GM17082-PA 943 GM17082-PA 57..934 82..1018 641 25.2 Plus
Dsec\GM10628-PA 1061 GM10628-PA 346..769 387..792 502 30 Plus
Dsec\GM18981-PA 542 GM18981-PA 92..454 94..555 382 26.1 Plus
Dsec\GM10628-PA 1061 GM10628-PA 105..314 60..278 309 32.4 Plus
Dsec\GM24663-PA 1171 GM24663-PA 971..1171 791..1028 212 25.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12726-PA 1167 GD12726-PA 125..860 2..812 826 30.4 Plus
Dsim\GD21827-PA 921 GD21827-PA 57..912 82..1018 585 24.5 Plus
Dsim\GD19613-PA 1053 GD19613-PA 437..761 466..792 432 30.4 Plus
Dsim\GD11810-PA 130 GD11810-PA 20..120 7..106 396 75.5 Plus
Dsim\GD19613-PA 1053 GD19613-PA 105..314 60..278 323 32.4 Plus
Dsim\GD12726-PA 1167 GD12726-PA 967..1167 791..1028 217 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21885-PA 1067 GJ21885-PA 32..1067 23..1028 4943 90 Plus
Dvir\GJ12226-PA 1179 GJ12226-PA 196..835 93..791 860 31.3 Plus
Dvir\GJ24561-PA 1081 GJ24561-PA 115..787 60..792 772 29.1 Plus
Dvir\GJ19803-PA 944 GJ19803-PA 60..935 87..1018 694 26.3 Plus
Dvir\GJ19220-PA 714 GJ19220-PA 90..453 94..555 387 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15715-PA 1067 GK15715-PA 10..1067 10..1028 5127 91.9 Plus
Dwil\GK12754-PA 1189 GK12754-PA 118..840 2..791 839 29.8 Plus
Dwil\GK24654-PA 936 GK24654-PA 59..927 87..1018 645 25.5 Plus
Dwil\GK14023-PA 1081 GK14023-PA 352..786 376..792 519 30.7 Plus
Dwil\GK14023-PA 1081 GK14023-PA 114..325 60..279 324 33.2 Plus
Dwil\GK16364-PA 728 GK16364-PA 293..458 383..555 238 31.6 Plus
Dwil\GK16364-PA 728 GK16364-PA 95..259 94..270 218 32.2 Plus
Dwil\GK12754-PA 1189 GK12754-PA 990..1189 792..1028 198 25.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14341-PA 1074 GE14341-PA 20..1074 7..1028 5307 94.8 Plus
Dyak\GE20127-PA 1177 GE20127-PA 131..870 2..812 833 30.6 Plus
Dyak\GE12725-PA 941 GE12725-PA 58..932 87..1018 657 25.2 Plus
Dyak\GE25275-PA 1068 GE25275-PA 342..776 376..792 527 30.7 Plus
Dyak\GE16533-PA 717 GE16533-PA 92..454 94..555 394 26.1 Plus
Dyak\GE25275-PA 1068 GE25275-PA 105..314 60..278 321 32.4 Plus
Dyak\GE20127-PA 1177 GE20127-PA 977..1177 791..1028 219 25.5 Plus

GH09271.hyp Sequence

Translation from 334 to 3420

> GH09271.hyp
MQSNSAKDDSDEMEIIPSEHNGTVHETKNEDSGDIHRAEENQKSSIDPNL
YLYDDDLETRPHISTFISSIANYENTIPAATDPDAKPAAPSARMGTLIGV
FLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLTCCCVTMLTAISMSAI
ATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGTTLAAAMYIVGAVEIV
LTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIFMGLIVFLGVKFVNKF
ATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLGKRLLKDIPLENCTKE
DSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASGVFYDNIFPSFLEKGQ
FISYGKSAIDIENTSGESYNQIMADITTSFTLLIGIFFPSVTGIMAGSNR
SGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAGTVDNLLLRDKFGQSI
GGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTGAPRLLQAIARDEIIP
FLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVDLLAPLLSMFFLMCYG
FVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTLCISVMIMTSWYFALI
AMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARYSLLRLEEGPPHTKNW
RPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLTICVSVIKGDHTKITN
KAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLSSVIQTIGLGGMKPNT
VIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALMVPKGINFYPESNHKI
GGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLRIFTVAQIEDNSIQMK
KDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTLMMEQRNQMLRALGLN
KKENSKVDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSV
KPDEFNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYM
EFLEVLTEGLEKVLMVRGGGREVITIYS*

GH09271.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
kcc-PB 1028 CG5594-PB 1..1028 1..1028 5328 100 Plus
kcc-PC 1059 CG5594-PC 1..1059 1..1028 5286 97.1 Plus
kcc-PG 1077 CG5594-PG 1..1077 1..1028 5268 95.5 Plus
kcc-PA 1043 CG5594-PA 20..1043 7..1028 5182 97.9 Plus
kcc-PD 1074 CG5594-PD 20..1074 7..1028 5140 95.1 Plus