Clone GH09281 Report

Search the DGRC for GH09281

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:92
Well:81
Vector:pOT2
Associated Gene/TranscriptCG4415-RA
Protein status:GH09281.pep: gold
Sequenced Size:1282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4415 2004-03-31 Blastp of sequenced clone
CG4415 2008-04-29 Release 5.5 accounting

Clone Sequence Records

GH09281.complete Sequence

1282 bp (1282 high quality bases) assembled on 2005-08-22

GenBank Submission: BT012499

> GH09281.complete
CAAGAGGTCACACCACGTGCGCTGCCAATTTGGAAATTTTTTTGGAGAAG
TTGTCCTCGCAAATCTGTGATCGCAAATCCCTCAGTTGCTGTTTATTCCT
CAAGATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCCAGATGGCGACCG
CTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAGACCGCTGCCGAC
AACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTCTCCCTCACCAAG
TGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAAAACCAAACGTCG
CAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGACGCCTTGGATGTC
AAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGGGAAGCCCCACAT
CATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCAAGAAGCTGATGA
GCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTGCCGAACTCGCAG
AAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGTTGAGGATGATCA
GAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAGCGGATCCCAAGG
AGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTGGCCGTGCGAACA
CGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGCACGCCGGATCCT
CATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCCGAGTGACCATGA
AGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCGGACGTCTACAGA
GTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGATCTGCGTGGAGGA
CACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTCAAGGCGGCCGAGC
GATTCCGTGGAACCTCGCCTGCCGGGCGGCAAGGTAACGAGGATGGAAAA
GCCCCTGGCGAGGAGTCCCCACACGACGACGACGACGACGAGAACGATGG
CGAGGACGCGGATGCCATGGGCCTACATGCGAAGGACATCGAACTGGTAC
AGATGCAGGCCGCGTGCTCGCGCAAAAAGGCGATCCAGGCGCTGCTGAAG
AACGACAACGATGTGGTCAATGCCATCATGGCCCTGACTGTGGGTTAAGT
CGCTCTGAGTGGCTCCTTTGTATTCAAAGTCATGAAATAAAGAGAATTTC
AATAACATCCATGTTCGCCATAGAAATTAATGGTAATTAAATGATTACAA
TCAAATCGTAAAAAAAAAAAAAAAAAAAAAAA

GH09281.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-RB 1259 CG4415-RB 1..1259 1..1259 6295 100 Plus
CG4415-RA 1359 CG4415-RA 4..1235 1..1232 6160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1037154..1038412 1..1259 6235 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1037275..1038536 1..1262 6310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1037275..1038536 1..1262 6310 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:22:55 has no hits.

GH09281.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:23:53 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1037154..1038412 1..1259 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:30:16 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 1..1044 105..1148 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:46 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RB 1..1044 105..1148 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:41:46 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 1..1044 105..1148 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:27 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 1..1044 105..1148 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:57:21 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 1..1044 105..1148 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:30:30 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 41..1277 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:45 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RB 1..1259 1..1259 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:41:46 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RB 30..1288 1..1259 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:27 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RA 41..1277 1..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:57:21 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
CG4415-RB 30..1288 1..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:23:53 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1037275..1038533 1..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:23:53 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1037275..1038533 1..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:23:53 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1037275..1038533 1..1259 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:41:46 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1037275..1038533 1..1259 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:01 Download gff for GH09281.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1037275..1038533 1..1259 100   Plus

GH09281.hyp Sequence

Translation from 2 to 1147

> GH09281.hyp
RGHTTCAANLEIFLEKLSSQICDRKSLSCCLFLKMGKKQKMKKAAQMATA
AEKLKTAAEKSKTAADNVVAKEKPAEEASPSPSGSGKKGKPKATQKPNVA
KALQKEISSSEDALDVKNKPPAGFSGAKGKPHIMGQMDPAYRNKIKKLMS
LAKQLPPNVFSLPNSQKEEGASAAKSCVVEDDQSTDSDDAPDLVEADPKE
TQPDEQGQLGTVAVRTREVSKQSRGERKARRILMKLDLKPMENVARVTMK
KGKNILLYIDQPDVYRVAHSSTYIFFGEICVEDTSTTSVASQAAVKAAER
FRGTSPAGRQGNEDGKAPGEESPHDDDDDENDGEDADAMGLHAKDIELVQ
MQAACSRKKAIQALLKNDNDVVNAIMALTVG*

GH09281.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-PB 347 CG4415-PB 1..347 35..381 1752 100 Plus
CG4415-PA 347 CG4415-PA 1..347 35..381 1752 100 Plus
Nacalpha-PD 217 CG8759-PD 26..216 179..380 350 45.1 Plus
Nacalpha-PA 217 CG8759-PA 26..216 179..380 350 45.1 Plus
Nacalpha-PC 217 CG8759-PC 26..216 179..380 350 45.1 Plus

GH09281.pep Sequence

Translation from 104 to 1147

> GH09281.pep
MGKKQKMKKAAQMATAAEKLKTAAEKSKTAADNVVAKEKPAEEASPSPSG
SGKKGKPKATQKPNVAKALQKEISSSEDALDVKNKPPAGFSGAKGKPHIM
GQMDPAYRNKIKKLMSLAKQLPPNVFSLPNSQKEEGASAAKSCVVEDDQS
TDSDDAPDLVEADPKETQPDEQGQLGTVAVRTREVSKQSRGERKARRILM
KLDLKPMENVARVTMKKGKNILLYIDQPDVYRVAHSSTYIFFGEICVEDT
STTSVASQAAVKAAERFRGTSPAGRQGNEDGKAPGEESPHDDDDDENDGE
DADAMGLHAKDIELVQMQAACSRKKAIQALLKNDNDVVNAIMALTVG*

GH09281.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24131-PA 287 GF24131-PA 54..287 103..347 520 53.7 Plus
Dana\GF13093-PA 217 GF13093-PA 67..216 186..346 322 49.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24760-PA 340 GG24760-PA 26..340 31..347 888 63.7 Plus
Dere\GG22551-PA 217 GG22551-PA 67..216 186..346 316 48.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13684-PA 263 GH13684-PA 110..258 187..347 376 50.3 Plus
Dgri\GH21313-PA 218 GH21313-PA 12..217 129..346 342 43.7 Plus
Dgri\GH22262-PA 218 GH22262-PA 12..217 129..346 342 43.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4415-PB 347 CG4415-PB 1..347 1..347 1752 100 Plus
CG4415-PA 347 CG4415-PA 1..347 1..347 1752 100 Plus
Nacalpha-PD 217 CG8759-PD 26..216 145..346 350 45.1 Plus
Nacalpha-PA 217 CG8759-PA 26..216 145..346 350 45.1 Plus
Nacalpha-PC 217 CG8759-PC 26..216 145..346 350 45.1 Plus
Nacalpha-PB 217 CG8759-PB 26..216 145..346 350 45.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19746-PA 218 GI19746-PA 28..217 145..346 363 46.6 Plus
Dmoj\GI17969-PA 230 GI17969-PA 73..227 185..347 349 50.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15463-PA 281 GL15463-PA 128..279 187..347 424 55.9 Plus
Dper\GL10112-PA 215 GL10112-PA 65..214 186..346 317 48.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18169-PA 277 GA18169-PA 124..275 187..347 426 55.9 Plus
Dpse\GA21300-PA 215 GA21300-PA 65..214 186..346 317 48.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16784-PA 338 GM16784-PA 24..337 32..346 1308 84.8 Plus
Dsec\GM20335-PA 217 GM20335-PA 67..216 186..346 320 48.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23064-PA 317 GD23064-PA 24..316 32..346 1269 80.1 Plus
Dsim\GD25812-PA 217 GD25812-PA 67..216 186..346 320 48.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18070-PA 218 GJ18070-PA 28..217 145..346 350 46.1 Plus
Dvir\GJ16309-PA 300 GJ16309-PA 143..297 187..347 342 52.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24696-PA 215 GK24696-PA 25..215 148..347 400 49.8 Plus
Dwil\GK17972-PA 221 GK17972-PA 70..220 186..346 323 48.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17266-PA 338 GE17266-PA 28..338 34..347 994 68 Plus
Dyak\Nacalpha-PA 217 GE13421-PA 40..216 157..346 314 45.1 Plus