Clone GH09295 Report

Search the DGRC for GH09295

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:92
Well:95
Vector:pOT2
Associated Gene/TranscriptCG8728-RA
Protein status:GH09295.pep: gold
Preliminary Size:2200
Sequenced Size:1935

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8728 2001-01-01 Release 2 assignment
CG8728 2001-09-19 Blastp of sequenced clone
CG8728 2003-01-01 Sim4 clustering to Release 3
CG8728 2008-04-29 Release 5.5 accounting
CG8728 2008-08-15 Release 5.9 accounting
CG8728 2008-12-18 5.12 accounting

Clone Sequence Records

GH09295.complete Sequence

1935 bp (1935 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058323

> GH09295.complete
GAAGAAATCAACATTTTTTTCTTCGAAATTCATTCGTTTAAAAGCGTAAA
AAAATGTGTTTCTGAATCAAATTCAAATATAATTCACATAATTCTGTAAA
TACCGTTATAATACCCAAATCACCAACACATGATGAACGGGCGCAGCATC
GGCATGCTGAAAAAGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTAT
GGCCACCAAGGTGACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAG
GAATCGGACAGATCACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAA
GTGAACACGCCTTCCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGA
GCCACTGCCCAACCTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAA
GCGCCATTACGAAGGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCG
GAACCGCGGTACGGACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGG
GCCGCGCTACGAAGTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAA
AGCTAGCTTTTAATTCCACAGTCAACTTTCCCAACAAGGACGCCATACTT
AAGGAGCTGGAGAAGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGA
CACGCTCATTTATGCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGA
CGCGTCTGCTGGCGGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAG
GTGAGTCTGGCCAGGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCAT
GCGGCCTGAGCAGGAGCCAATACTGATGGACATGATCCACGCGGCAGCAT
TCAGGGACAATACCTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTG
GACCACATAAACCGCAATGTGCTAATGAACTACCTTAAGTACCATCACTC
TCCCAAGCGCATGGTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGG
TTAGCCATGTGCAAAGATACTTTGTGGAGGACAAAGCCATCTGGGAAACG
GAAGCCCTGGAGGACTCGGGACCTAAGCAAGTAGATACGTCTATTGCACA
ATACACTGGCGGATTAGTAAAGGAACAATGCGAAATCCCAATCTATGCGG
CCGCTGGGCTACCAGAGCTGGCCCATGTAATTCTCGGATTTGAAGGCTGT
TCCCACCAGGACAAGGACTTCGTTCCCCTGTGCGTCCTGAATATCATGAT
GGGCGGTGGTGGATCCTTCTCCGCAGGCGGTCCTGGCAAGGGCATGTACT
CGCGCCTGTATACCAAGGTGCTAAACCGCTACCACTGGATGTACAGCGCC
ACGGCCTACAATCATGCTTACGGCGATTGTGGTCTCTTCTGTGTTCACGG
TAGCGCACCGCCACAGCACATGAACGACATGGTCGAGGTCCTGACCCGCG
AGATGATGGGCATGGCCGCAGAGCCAGGCCGTGAAGAGCTAATGCGCTCG
AAGATCCAGCTTCAGTCCATGTTACTAATGAACCTGGAGTCGAGACCCGT
TGTGTTCGAGGACGTGGGCCGCCAAGTGCTGGTGACGGGGCAGCGAAAAC
GACCGCAGCATTTTATCAAGGAAATTGAAAGTGTAACTGCCGCCGATATC
CAACGCGTTGCTCAACGTCTCCTGAGCTCGCCGCCTTCTGTGGCCGCCCG
CGGCGACATCCACAATCTTCCCGAGATGAGCCACATCACCAACGCGGTCA
GTGGTTCAGGACGTACCGGGCTGGGACGTAGGCTTTCCTTGTTCAAATAG
CGCTGGGTGTGAGACCGCCTCCATTGGATATCATTTCGCTTTGTTTACAA
TATTGTGCGAAGGGCAACCGTGTTAAGTTTAAATTGGCTAAAAACCAAAA
TTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH09295.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 2016 CG8728-RA 86..1994 1..1909 9545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3824597..3825103 1627..1121 2535 100 Minus
chr2R 21145070 chr2R 3825350..3825768 983..565 2095 100 Minus
chr2R 21145070 chr2R 3825830..3826212 564..182 1900 99.7 Minus
chr2R 21145070 chr2R 3824259..3824537 1905..1627 1395 100 Minus
chr2R 21145070 chr2R 3826291..3826477 187..1 935 100 Minus
chr2R 21145070 chr2R 3825154..3825295 1123..982 695 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937204..7937710 1627..1121 2535 100 Minus
2R 25286936 2R 7937957..7938375 983..565 2095 100 Minus
2R 25286936 2R 7938437..7938819 564..182 1900 99.7 Minus
2R 25286936 2R 7936862..7937144 1909..1627 1415 100 Minus
2R 25286936 2R 7938898..7939084 187..1 935 100 Minus
2R 25286936 2R 7937761..7937902 1123..982 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7938403..7938909 1627..1121 2535 100 Minus
2R 25260384 2R 7939156..7939574 983..565 2095 100 Minus
2R 25260384 2R 7939636..7940018 564..182 1900 99.7 Minus
2R 25260384 2R 7938061..7938343 1909..1627 1415 100 Minus
2R 25260384 2R 7940097..7940283 187..1 935 100 Minus
2R 25260384 2R 7938960..7939101 1123..982 710 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:45:52 has no hits.

GH09295.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:46:58 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3824259..3824536 1628..1905 100 <- Minus
chr2R 3824597..3825101 1123..1627 100 <- Minus
chr2R 3825155..3825295 982..1122 99 <- Minus
chr2R 3825352..3825768 565..981 100 <- Minus
chr2R 3825830..3826208 186..564 100 <- Minus
chr2R 3826293..3826477 1..185 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:30:23 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 130..1800 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:46 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 130..1800 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:57:11 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 130..1800 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:35 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 130..1800 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:26 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 130..1800 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:24 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 86..1990 1..1905 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:46 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 86..1990 1..1905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:57:11 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 31..1935 1..1905 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:35 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 86..1990 1..1905 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:26 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 31..1935 1..1905 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:58 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7936866..7937143 1628..1905 100 <- Minus
2R 7937204..7937708 1123..1627 100 <- Minus
2R 7937762..7937902 982..1122 100 <- Minus
2R 7937959..7938375 565..981 100 <- Minus
2R 7938437..7938815 186..564 100 <- Minus
2R 7938900..7939084 1..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:58 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7936866..7937143 1628..1905 100 <- Minus
2R 7937204..7937708 1123..1627 100 <- Minus
2R 7937762..7937902 982..1122 100 <- Minus
2R 7937959..7938375 565..981 100 <- Minus
2R 7938437..7938815 186..564 100 <- Minus
2R 7938900..7939084 1..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:58 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7936866..7937143 1628..1905 100 <- Minus
2R 7937204..7937708 1123..1627 100 <- Minus
2R 7937762..7937902 982..1122 100 <- Minus
2R 7937959..7938375 565..981 100 <- Minus
2R 7938437..7938815 186..564 100 <- Minus
2R 7938900..7939084 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:57:11 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3824371..3824648 1628..1905 100 <- Minus
arm_2R 3824709..3825213 1123..1627 100 <- Minus
arm_2R 3825267..3825407 982..1122 100 <- Minus
arm_2R 3825464..3825880 565..981 100 <- Minus
arm_2R 3825942..3826320 186..564 100 <- Minus
arm_2R 3826405..3826589 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:05 Download gff for GH09295.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7938065..7938342 1628..1905 100 <- Minus
2R 7938403..7938907 1123..1627 100 <- Minus
2R 7938961..7939101 982..1122 100 <- Minus
2R 7939158..7939574 565..981 100 <- Minus
2R 7939636..7940014 186..564 100 <- Minus
2R 7940099..7940283 1..185 100   Minus

GH09295.pep Sequence

Translation from 129 to 1799

> GH09295.pep
MMNGRSIGMLKKLRHTWRTFPRLMATKVTSLGGDEVGSGTGIGQITGGVR
TSDGPQKVNTPSKEIVTHLPPLTEPLPNLPEAVYAAPLAESAITKVTTLP
NGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNF
PNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLR
PTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPK
LCPLENLDHINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVE
DKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEIPIYAAAGLPELAHV
ILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNR
YHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPG
REELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIE
SVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSGRTGLGR
RLSLFK*

GH09295.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11230-PA 555 GF11230-PA 1..555 2..556 2636 91.5 Plus
Dana\GF16898-PA 470 GF16898-PA 41..465 94..540 464 29.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10696-PA 556 GG10696-PA 1..556 1..556 2910 97.3 Plus
Dere\GG16882-PA 470 GG16882-PA 41..465 94..540 463 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20583-PA 555 GH20583-PA 1..555 2..556 2522 86.7 Plus
Dgri\GH18338-PA 470 GH18338-PA 41..465 94..540 462 29 Plus
Dgri\GH15899-PA 443 GH15899-PA 26..442 88..536 187 20.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 556 CG8728-PA 1..556 1..556 2891 100 Plus
UQCR-C1-PB 470 CG3731-PB 41..465 94..540 454 28.5 Plus
UQCR-C1-PA 470 CG3731-PA 41..465 94..540 454 28.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19728-PA 554 GI19728-PA 1..552 2..553 2478 85.9 Plus
Dmoj\GI23318-PA 470 GI23318-PA 41..465 94..540 467 29 Plus
Dmoj\GI16551-PA 441 GI16551-PA 34..440 96..536 225 23.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10384-PA 555 GL10384-PA 1..555 2..556 2456 85.2 Plus
Dper\GL26015-PA 820 GL26015-PA 1..549 2..555 2219 76.8 Plus
Dper\GL23853-PA 470 GL23853-PA 41..465 94..540 462 29.3 Plus
Dper\GL23351-PA 441 GL23351-PA 25..440 87..536 267 23 Plus
Dper\GL17869-PA 441 GL17869-PA 25..440 87..536 264 23.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21285-PA 555 GA21285-PA 1..555 2..556 2455 85.2 Plus
Dpse\GA25238-PA 820 GA25238-PA 1..549 2..555 2244 77.5 Plus
Dpse\GA25237-PA 820 GA25237-PA 1..549 2..555 2232 77 Plus
Dpse\GA17647-PA 470 GA17647-PA 41..465 94..540 459 28.5 Plus
Dpse\GA27229-PA 441 GA27229-PA 25..435 87..531 269 23.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20744-PA 556 GM20744-PA 1..556 1..556 2951 98.6 Plus
Dsec\GM24191-PA 470 GM24191-PA 41..465 94..540 462 29.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10210-PA 556 GD10210-PA 1..556 1..556 2953 98.7 Plus
Dsim\GD18983-PA 470 GD18983-PA 41..465 94..540 462 29.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14966-PA 397 GJ14966-PA 1..397 144..556 1756 82.8 Plus
Dvir\GJ10322-PA 470 GJ10322-PA 41..465 94..540 476 29.4 Plus
Dvir\GJ12803-PA 441 GJ12803-PA 34..440 96..536 235 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21348-PA 559 GK21348-PA 1..559 2..556 2451 85.5 Plus
Dwil\GK13463-PA 470 GK13463-PA 41..465 94..540 475 29.6 Plus
Dwil\GK20075-PA 441 GK20075-PA 25..440 87..536 241 22.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23498-PA 556 GE23498-PA 1..556 1..556 2931 97.8 Plus
Dyak\GE24263-PA 470 GE24263-PA 41..465 94..540 463 29.3 Plus

GH09295.hyp Sequence

Translation from 129 to 1799

> GH09295.hyp
MMNGRSIGMLKKLRHTWRTFPRLMATKVTSLGGDEVGSGTGIGQITGGVR
TSDGPQKVNTPSKEIVTHLPPLTEPLPNLPEAVYAAPLAESAITKVTTLP
NGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNF
PNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLR
PTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPK
LCPLENLDHINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVE
DKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEIPIYAAAGLPELAHV
ILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNR
YHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPG
REELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIE
SVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSGRTGLGR
RLSLFK*

GH09295.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 556 CG8728-PA 1..556 1..556 2891 100 Plus
CG3731-PB 470 CG3731-PB 41..465 94..540 454 28.5 Plus
CG3731-PA 470 CG3731-PA 41..465 94..540 454 28.5 Plus