BDGP Sequence Production Resources |
Search the DGRC for GH09317
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 93 |
Well: | 17 |
Vector: | pOT2 |
Associated Gene/Transcript | betaCOP-RA |
Protein status: | GH09317.pep: gold |
Preliminary Size: | 3168 |
Sequenced Size: | 3174 |
Gene | Date | Evidence |
---|---|---|
CG6223 | 2000-02-14 | Blastp of sequenced clone |
CG6123 | 2001-01-01 | Release 2 assignment |
CG6205 | 2001-01-01 | Release 2 assignment |
CG6223 | 2001-01-01 | Release 2 assignment |
CG5993 | 2001-01-01 | Release 2 assignment |
CG6023 | 2001-01-01 | Release 2 assignment |
CG15057 | 2001-01-01 | Release 2 assignment |
CG15058 | 2001-01-01 | Release 2 assignment |
CG15059 | 2001-01-01 | Release 2 assignment |
CG6223 | 2003-01-01 | Sim4 clustering to Release 3 |
betaCop | 2008-04-29 | Release 5.5 accounting |
betaCop | 2008-08-15 | Release 5.9 accounting |
betaCop | 2008-12-18 | 5.12 accounting |
3174 bp (3174 high quality bases) assembled on 2000-02-14
GenBank Submission: AF145656
> GH09317.complete ACACGTCGGAAAGACCAAAAAAAAACTGAATTTGGAAATTAGGAAATAAG TTGGTCAATTGGCATTATCGGGATAAACAGGCGAACGGAATAGGCAGCCA CGATGACGTCGCAAGTGCCGTGCTACACGATAATCAACTCGCCGGACCTG GAGGTGACCAACGAGATGCAACTGAAGCGCGATCTCGAAAAGGGCGACAC GAACGTGAAGATCGAGACGCTGAAGCGGGTAATCAAGTTGCTGCTGAATG GGGAGCGGTATCCGGGCCTGATCATGACCATCATACGCTTCGTCCTGCCG GTGCAGAACCACACGATCAAGAAGCTGCTGCTCATCTTCTGGGAAATTGT GCCGAAGACATCGGCGGATGGGAAGCTGCTGCAGGAGATGATACTGGTGT GCGATGCGTACAGGAAGGATTTGCAGCATCCCAATGAGTTTCTGCGCGGC TCGACACTGCGCTTCCTCTGCAAGCTGAAGGAGCCGGAGCTGCTGGAGCC ACTGATGCCGGCCATACGGGCGTGCCTGGATCACCGGCACTCGTATGTGC GACGAAATGCCGTGCTGGCCATCTTTACCATCTACAAGAACTTCGATTGG CTGGTGCCCGATGGGCCGGAGCTGATTGCCAGCTTCCTGGACACGCAGCA GGACATGAGCTGCAAGCGCAACGCCTTCCTTATGCTACTGCATGCGGACC AGGAGCGAGCGCTCAACTATCTGGCCAGTTGCATCGATCAGGTGCACACT TTCGGCGATATACTGCAGCTGGTCATCGTGGAGCTGATCTATAAGGTGTG CCATGCCAATCCCGCCGAGCGTTCGCGGTTCATACGCTGCATCTACAACC TGCTGAACTCCAGCTCGAATGCGGTGCGTTACGAGTCCGCTGGCACATTG ATTACGCTCTCGCTGGCGCCCACGGCCATCAAGGCGGCGGCCAGTTGCTA CATCGAACTGGTGGTCAAGGAGAGCGACAACAACGTCAAGCTAATCGTGC TCGATCGCCTGGTGGCCATGAAGGAGCACGAGGGCATGGAGAAGGTGATG CAGGATCTGGTGATGGACGTTCTGCGCGTCCTGGCCGCACCAGACATCGA GGTGCGCAGGAAAACACTCGCGCTGGCCCTGGACTTGGTCTATTCGCGTA ATATTGGCGAAATGGTGCTGGTCCTCAAGAAGGAGGTGGCCAAGACGCAC AATGTGGAGCACGAGGACACTGGCAAGTACAGGCAGCTGCTCGTCCGCAC CCTGCACACCTGCTCCATCAAGTTTCCCGATGTGGCCGCCAATGTTATAC CCGTACTGGTTGAATTCCTCTCGGATACCAACGAACTTGCCGCCGCCGAT GTGCTTATCTTCATACGCGAAGCCATCCAAAAGTTCCCCGCCCTGCGCGC CCTCATCATTGAGCATTTAATTGAGGCCTTCCCGCAGATTAAGTCCTCCA AAATTCATCGCGCCGCCGTTTGGATTTTGGGTGAATACGTGGAGGGCTCG CAAATCCTGGAGGTGATTGCCGTCATTCAGCAGACGCTGGGCGAAGTGCC CATGGTGGAGGCGGAGCAGCGTCGCTTGGCCGGCGACCAGACCGAGGAGC AGAAGCAGCAGCAGGGATCCGCAGGCGGCAATGCAGCTGGATCCGCCGCA GAGGGCTCTGGCTCCGGAAACGCCAGCAACAAGGTCACCTCCGATGGAAC CTATGCCACCCAGAGTGCCTACAGTCTGGCCCCGGTGGCCAAGGCGGAGA AACGTCCGCCATTGCGTCAGTACTTGATGGACGGCGACTTCTTCATCGGC GCCGCTCTATCCGCCACGTTGACCAAGCTGGCACTGCGCTACGCAGAGCT GGAGACGGAGGCGCGTGCCCAGAATCGTCTGACCACGCAGGTAATGCTGA TCATGAGCTCGATACTGCACCTGGGCAAGTCCGGTTTCCCTAGCAAGCCC ATAACCAACGATGACACCGATCGCATCTTCGTCTGCCTGCGCACGCTGAG CGAACGCACGCCGGAGGCTATCTCCGTCTTCACACTGTACTGCCGCGAGG CTCTGGGCAAGATGCTGGATGCGCAGCACGACGAGGACCAGCGCATGTTG AAGGAGAAGCAGAAGGCCACCGCCAAGGTGCAGCCGGACGATCCGGTGCT CTTTGCACAGCTCTCGAACGGACGTGACAATCAGCTGGGCGAGAATGTGT TCGAATCCAGTCTGAACCAGGCGTTGGCCGGCAGCAAGAACGCCCAGCTG AGCGACGTGGCCTCGCCGAACAGCAAGCTCAACAAGGTCACCCAACTGAC TGGCTTCTCGGATCCCGTCTATGCGGAGGCCTACGTCAATGTCAATCAGT ACGATATTGTCCTGGACGTGCTGATCGTCAACCAGACCAACGACACGCTA CAGAACTGCACACTGGAGTTGGCCACATTGGGCGATCTTAAGCTGGTGGA GCGCCCGCATCCAGTGGTCCTGGCTCCGCACGACTTCTGCAATATCAAGG CCAACGTAAAGGTCTCCTCCACAGAGAACGGCATCATCTTCGGCAATATT GTTTACGAAACCGCCCTGAACACGAATGTGGTGGTCCTCAATACCATTCA CATCGACATCATGGACTACATAATTCCGGCCAGCTGCACGGACACCGAGT TCCGTCAAATGTGGCAGGACTTCGAGTGGGAGAACAAGGTCACCGTCAAC ACCAGCTTCACCGACCTGCACGAATATCTCAAGCACCTGCTGAAGAGCAC CAACATGAAGTGCCTCACGCCGGAGAAGGCGCTGTCCGGCCAGTGCGGCT TCATGGCCGCCAACATGTACGCCAAGTCCATTTTCGGAGAGAATGCCTTG GCCAATCTGAGTATCGAGAAGCCCGTCGATGATCCCGATTCGAAGGTGAC GGGACACATACGCATTCGCGCCAAGAGTCAGGGCATGGCCTTGAGTCTGG GCGACAAGATCAGCTCCTCGCAGAAGCAGTCGGTGCAGGCGGCCTAGTGG ACGTGGAACTGGACGTGGACGACCAGCCACCAGCAGGAGCGACGTATCTA GACGACGTACTCGGCCACCTGCCCGCATTCCGCCAGCTGCAGCTTCTTCA ATTTACATTACACGTTACAATTATACATAAAGAATATAATATTATACCTT AACCCCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
betaCop-RA | 3274 | betaCop-RA | 78..3235 | 1..3158 | 15790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18272652..18274385 | 1734..1 | 8535 | 99.5 | Minus |
chrX | 22417052 | chrX | 18271793..18272448 | 2389..1734 | 3280 | 100 | Minus |
chrX | 22417052 | chrX | 18271228..18271504 | 2827..2551 | 1385 | 100 | Minus |
chrX | 22417052 | chrX | 18270739..18270966 | 3156..2929 | 1125 | 99.6 | Minus |
chrX | 22417052 | chrX | 18271572..18271733 | 2551..2390 | 795 | 99.4 | Minus |
chrX | 22417052 | chrX | 18271053..18271159 | 2932..2826 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18383462..18385195 | 1734..1 | 8670 | 100 | Minus |
X | 23542271 | X | 18382603..18383258 | 2389..1734 | 3280 | 100 | Minus |
X | 23542271 | X | 18382038..18382314 | 2827..2551 | 1385 | 100 | Minus |
X | 23542271 | X | 18381547..18381776 | 3158..2929 | 1150 | 100 | Minus |
X | 23542271 | X | 18382382..18382543 | 2551..2390 | 810 | 100 | Minus |
X | 23542271 | X | 18381863..18381969 | 2932..2826 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18391560..18393293 | 1734..1 | 8670 | 100 | Minus |
X | 23527363 | X | 18390701..18391356 | 2389..1734 | 3280 | 100 | Minus |
X | 23527363 | X | 18390136..18390412 | 2827..2551 | 1385 | 100 | Minus |
X | 23527363 | X | 18389645..18389874 | 3158..2929 | 1150 | 100 | Minus |
X | 23527363 | X | 18390480..18390641 | 2551..2390 | 810 | 100 | Minus |
X | 23527363 | X | 18389961..18390067 | 2932..2826 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 654..754 | 1654..1554 | 135 | 63.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18270739..18270963 | 2932..3156 | 99 | <- | Minus |
chrX | 18271054..18271159 | 2826..2931 | 100 | <- | Minus |
chrX | 18271230..18271503 | 2552..2825 | 100 | <- | Minus |
chrX | 18271572..18271733 | 2390..2551 | 99 | <- | Minus |
chrX | 18271793..18272448 | 1734..2389 | 100 | <- | Minus |
chrX | 18272653..18274385 | 1..1733 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..2895 | 103..2997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..2895 | 103..2997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..2895 | 103..2997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..2895 | 103..2997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCOP-RA | 1..2895 | 103..2997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..3156 | 1..3156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..3156 | 1..3156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..3156 | 1..3156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCop-RA | 1..3156 | 1..3156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
betaCOP-RA | 48..3203 | 1..3156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18382382..18382543 | 2390..2551 | 100 | <- | Minus |
X | 18381549..18381773 | 2932..3156 | 100 | <- | Minus |
X | 18381864..18381969 | 2826..2931 | 100 | <- | Minus |
X | 18382040..18382313 | 2552..2825 | 100 | <- | Minus |
X | 18382603..18383258 | 1734..2389 | 100 | <- | Minus |
X | 18383463..18385195 | 1..1733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18382382..18382543 | 2390..2551 | 100 | <- | Minus |
X | 18381549..18381773 | 2932..3156 | 100 | <- | Minus |
X | 18381864..18381969 | 2826..2931 | 100 | <- | Minus |
X | 18382040..18382313 | 2552..2825 | 100 | <- | Minus |
X | 18382603..18383258 | 1734..2389 | 100 | <- | Minus |
X | 18383463..18385195 | 1..1733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18382382..18382543 | 2390..2551 | 100 | <- | Minus |
X | 18381549..18381773 | 2932..3156 | 100 | <- | Minus |
X | 18381864..18381969 | 2826..2931 | 100 | <- | Minus |
X | 18382040..18382313 | 2552..2825 | 100 | <- | Minus |
X | 18382603..18383258 | 1734..2389 | 100 | <- | Minus |
X | 18383463..18385195 | 1..1733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18275582..18275806 | 2932..3156 | 100 | <- | Minus |
arm_X | 18275897..18276002 | 2826..2931 | 100 | <- | Minus |
arm_X | 18276073..18276346 | 2552..2825 | 100 | <- | Minus |
arm_X | 18276415..18276576 | 2390..2551 | 100 | <- | Minus |
arm_X | 18276636..18277291 | 1734..2389 | 100 | <- | Minus |
arm_X | 18277496..18279228 | 1..1733 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18390138..18390411 | 2552..2825 | 100 | <- | Minus |
X | 18390480..18390641 | 2390..2551 | 100 | <- | Minus |
X | 18389647..18389871 | 2932..3156 | 100 | <- | Minus |
X | 18389962..18390067 | 2826..2931 | 100 | <- | Minus |
X | 18390701..18391356 | 1734..2389 | 100 | <- | Minus |
X | 18391561..18393293 | 1..1733 | 100 | Minus |
Translation from 102 to 2996
> GH09317.pep MTSQVPCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNG ERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVC DAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVR RNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQ ERALNYLASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYNL LNSSSNAVRYESAGTLITLSLAPTAIKAAASCYIELVVKESDNNVKLIVL DRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRN IGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIP VLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSK IHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQ KQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEK RPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLI MSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREA LGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVF ESSLNQALAGSKNAQLSDVASPNSKLNKVTQLTGFSDPVYAEAYVNVNQY DIVLDVLIVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKA NVKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIPASCTDTEF RQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGF MAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLG DKISSSQKQSVQAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22509-PA | 962 | GF22509-PA | 1..962 | 1..964 | 4869 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18127-PA | 965 | GG18127-PA | 1..965 | 1..964 | 5121 | 99.1 | Plus |
Dere\GG19251-PA | 921 | GG19251-PA | 62..458 | 69..464 | 158 | 21.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12352-PA | 970 | GH12352-PA | 2..970 | 3..964 | 4703 | 91.8 | Plus |
Dgri\GH17690-PA | 925 | GH17690-PA | 62..458 | 69..464 | 159 | 21.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
betaCOP-PA | 964 | CG6223-PA | 1..964 | 1..964 | 4881 | 100 | Plus |
AP-1-2beta-PA | 921 | CG12532-PA | 17..458 | 23..464 | 204 | 21.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15599-PA | 959 | GI15599-PA | 2..959 | 3..964 | 4719 | 92 | Plus |
Dmoj\GI16098-PA | 927 | GI16098-PA | 62..458 | 69..464 | 159 | 21.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27037-PA | 935 | GL27037-PA | 2..935 | 3..964 | 4659 | 91 | Plus |
Dper\GL15014-PA | 924 | GL15014-PA | 62..458 | 69..464 | 159 | 21.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19453-PA | 965 | GA19453-PA | 2..965 | 3..964 | 4839 | 93.6 | Plus |
Dpse\GA11682-PA | 924 | GA11682-PA | 62..458 | 69..464 | 159 | 21.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22820-PA | 964 | GM22820-PA | 1..964 | 1..964 | 5166 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15643-PA | 846 | GD15643-PA | 427..846 | 545..964 | 2248 | 99.8 | Plus |
Dsim\GD15643-PA | 846 | GD15643-PA | 1..376 | 1..376 | 2016 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15202-PA | 960 | GJ15202-PA | 2..960 | 3..964 | 4757 | 92.6 | Plus |
Dvir\GJ15746-PA | 925 | GJ15746-PA | 62..458 | 69..464 | 159 | 21.4 | Plus |
Translation from 102 to 2996
> GH09317.hyp MTSQVPCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNG ERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVC DAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVR RNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQ ERALNYLASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYNL LNSSSNAVRYESAGTLITLSLAPTAIKAAASCYIELVVKESDNNVKLIVL DRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRN IGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIP VLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSK IHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQ KQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEK RPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLI MSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREA LGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVF ESSLNQALAGSKNAQLSDVASPNSKLNKVTQLTGFSDPVYAEAYVNVNQY DIVLDVLIVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKA NVKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIPASCTDTEF RQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGF MAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLG DKISSSQKQSVQAA*