Clone GH09383 Report

Search the DGRC for GH09383

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:93
Well:83
Vector:pOT2
Associated Gene/Transcriptatl-RA
Protein status:GH09383.pep: gold
Preliminary Size:2267
Sequenced Size:2861

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6668 2001-01-01 Release 2 assignment
CG6668 2003-01-01 Sim4 clustering to Release 3
CG6668 2003-01-15 Blastp of sequenced clone
atl 2008-04-29 Release 5.5 accounting
atl 2008-08-15 Release 5.9 accounting
atl 2008-12-18 5.12 accounting

Clone Sequence Records

GH09383.complete Sequence

2861 bp (2861 high quality bases) assembled on 2003-01-15

GenBank Submission: AY069079

> GH09383.complete
CAGAGCACAAACAAAATACGTACTTTTCTGCTTCCAAAGTGTCGAAAAAT
CGCAGCGCAGTGAAGTCCAGTGTCCGATGTAAATGGTTAAGTAAATTGAC
AGGTCGAAATCCAAAAGATTAATAAGAAAGAATTTCCCAACGGAGGCAAA
AATAGCCGGTAAAACAGAGACAGCAAACGGAATAGCAGACAAGGATTCCA
AACACCATAATGGGCGGATCGGCAGTGCAGGTGATCAACGCCTCCGAGGA
GCACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTAATGCGGG
ATGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGGAGCCTTC
CGAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATATGTATTC
AAAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAATCAGATC
CGCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACACCACCGGC
ATTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACGGCGACAA
GATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGCCAGAGCA
CGGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCTGTCCTCG
GTGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACCTGCAGCA
CCTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGACACCGGCA
AAAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAGCTTTCCC
TACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGAAACGACG
TCTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTGCGTCGCC
ACATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCCCCATCCA
GGTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGCAGGACAT
CACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATGCTGCTGG
CACCGGACAACCTTGTCTACAAGGAGATCAGCGGACAGCGGGTGCGGGCC
CGCGATCTCATCCAGTACTTCCAATCGTACATGAACATCTACAAGGGCAA
CGAGCTGCCCGAGCCGAAGAGCATGCTGGTGGCCACCGCAGAGGCTAACC
ATTTGACTGCCGTGGCCGCCGCCAAGGAGCTGTACGGACAGCTCATGGAG
GAGGTGTGCGGTGGAACGCGGCCGTACTTAAGCACCGCCCATCTCCAGAC
GGAGCACCTGCGGGTGAAGGACAAGGCACTGTTCCAGTTCGCCGCCAAGC
GCAAGATGGGTGGTGAGGAGTTCACCGAGAAATTCCGCAAGCAACTGGAA
GATGATCTTGAGGAGGTCTTCACCAACTACCAAGCACACAACGAGAGCAA
GAACATCTTTAAGGCAGCACGGACACCGGCGGTGTACTTCGCCTGCGCCG
TCATCATGTACATCCTTAGCGGCATCTTTGGATTGGTGGGTCTCTATACG
TTCGCCAACTTCTGCAACCTGGTTATGGGTGTGGCGCTTCTAACGCTGGC
TCTGTGGGCCTACATTAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCA
AGTTGGATGACTTTGCAACGCTATTGTGGGAGAAATTCATGCGACCCATC
TATCACGGCTGCATGGAGAAGGGCATCCACCATGTTGCCACTCATGCGAC
CGAAATGGCTGTCGGCGGAGGCGCAGCCTCCTACCGCTCCCAGACCTCGG
TGAATGCGTCCAATGGCAAGGTGAAGCGGTCATGAGAATACGCCCAAGGA
GCGCAGCACAAAACGCAGCAGCCGGTGCCGTCGCAGCCGCCGTCGGCAAG
AACCAATAACAACAACAATAATAATAACAACAACAACAATGTGGCATACA
AATCAAACAGGAGCAACAACATTAACGAGGCCGACGGTTTCATTCACAAC
ATCTGGCGCAAGTTCGGCGGCAGCAACGAAGAGAAGGGCCAAGTCAGCAC
CCAAAGTCCAGCGACCCCGTCCTCTTCCTCCCAGGCGCCAAATAGTCGCA
AGAAGCGCAAAGCGAAGCGCAATTAGGTGTCCATGGACCAAGTAGAATGG
TTCGATTTTCGAAAGGACGACTCCCCCTCTAATTTGTATAAATCTAAACC
CTTCTATAGTGCGTGAGAACCGGAAACACAAACGTCTAGCTATTAATTGC
CCTTAAAGGAAGTTGTTTTTATATTGCATTAATTGAAGTGTAGATGGTCT
ATATTACGTATATTTAAGAGTAAGTGCATCATTAGTAAGTGGCTCGTGTC
TGTTGAAAAGTGAAATTTTAAATTGTTTTTTTACAAACGATATGCGTCTG
AAACGGATATATGAAATTTAACGCTGTAATATAAAGAAATCGCTAACGAA
TTTAATTTGTTTAATTTCCATCCAAGGCGTACTCCCCCCACCTACCCGCC
TCCTTTTCCATCTTATCTCATCTTTGGTATAGAATTCCATAAGCAATCTA
TGTATAAACAGAGTGCACATTGTTGTTGGCTGGTTTGCTAAGCGCCTCAT
TTTGCCACCTTTTGTTATTTAAAATTATAAAAAAAACAAAAAAACACGAA
GAAAATAAAATAGAAGTCATTGCCACCCATTAAAGTTCAACGCGAAGGAG
CAATGCTGGTATAGGTCATTAGTTTATCTTGTGCAGTAAAATTTATAGAA
CTCTTGGTTTTGTTTCGATTAAACAATAAATGTATTTAATGATAACAGCT
CACTAGCAGTTATGGCCATCGAAAAATAAATGGAAAAAACGTAAAAAAAA
AAAAAAAAAAA

GH09383.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
atl-RA 2962 atl-RA 86..2928 1..2843 14215 100 Plus
atl.c 2883 atl.c 49..2883 1..2842 14080 99.7 Plus
atl-RB 3237 atl-RB 456..3203 96..2843 13740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20455403..20456618 403..1618 6080 100 Plus
chr3R 27901430 chr3R 20456806..20457962 1686..2842 5785 100 Plus
chr3R 27901430 chr3R 20455031..20455339 96..404 1545 100 Plus
chr3R 27901430 chr3R 20448966..20449064 1..99 480 99 Plus
chr3R 27901430 chr3R 20456679..20456747 1617..1685 345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24632155..24633370 403..1618 6080 100 Plus
3R 32079331 3R 24633558..24634715 1686..2843 5790 100 Plus
3R 32079331 3R 24631783..24632091 96..404 1545 100 Plus
3R 32079331 3R 24625718..24625816 1..99 480 99 Plus
3R 32079331 3R 24633431..24633499 1617..1685 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24372986..24374201 403..1618 6080 100 Plus
3R 31820162 3R 24374389..24375546 1686..2843 5790 100 Plus
3R 31820162 3R 24372614..24372922 96..404 1545 100 Plus
3R 31820162 3R 24366549..24366647 1..99 480 98.9 Plus
3R 31820162 3R 24374262..24374330 1617..1685 345 100 Plus
Blast to na_te.dros performed 2019-03-16 13:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 748..791 2627..2669 118 77.3 Plus

GH09383.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:22:56 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20448966..20449060 1..95 100 -> Plus
chr3R 20455031..20455339 96..404 100 -> Plus
chr3R 20455405..20456618 405..1618 100 -> Plus
chr3R 20456681..20456747 1619..1685 100 -> Plus
chr3R 20456806..20457962 1686..2842 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:30:50 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RB 1..1626 210..1835 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:32 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RB 1..1626 210..1835 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:55 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 1..1626 210..1835 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:26 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RB 1..1626 210..1835 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:17:35 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 1..1626 210..1835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:18 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 44..2885 1..2842 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:32 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 44..2885 1..2842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:55 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 48..2889 1..2842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:26 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 44..2885 1..2842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:35 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
atl-RA 48..2889 1..2842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:22:56 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24625718..24625812 1..95 100 -> Plus
3R 24631783..24632091 96..404 100 -> Plus
3R 24632157..24633370 405..1618 100 -> Plus
3R 24633433..24633499 1619..1685 100 -> Plus
3R 24633558..24634714 1686..2842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:22:56 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24625718..24625812 1..95 100 -> Plus
3R 24631783..24632091 96..404 100 -> Plus
3R 24632157..24633370 405..1618 100 -> Plus
3R 24633433..24633499 1619..1685 100 -> Plus
3R 24633558..24634714 1686..2842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:22:56 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24625718..24625812 1..95 100 -> Plus
3R 24631783..24632091 96..404 100 -> Plus
3R 24632157..24633370 405..1618 100 -> Plus
3R 24633433..24633499 1619..1685 100 -> Plus
3R 24633558..24634714 1686..2842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:55 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20451440..20451534 1..95 100 -> Plus
arm_3R 20457505..20457813 96..404 100 -> Plus
arm_3R 20457879..20459092 405..1618 100 -> Plus
arm_3R 20459155..20459221 1619..1685 100 -> Plus
arm_3R 20459280..20460436 1686..2842 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:42 Download gff for GH09383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24372614..24372922 96..404 100 -> Plus
3R 24372988..24374201 405..1618 100 -> Plus
3R 24374264..24374330 1619..1685 100 -> Plus
3R 24374389..24375545 1686..2842 100   Plus
3R 24366549..24366643 1..95 100 -> Plus

GH09383.pep Sequence

Translation from 209 to 1834

> GH09383.pep
MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKG
KSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILM
WSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQI
YNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYEA
EYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLN
VATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL
IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVC
GGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDL
EEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIFGLVGLYTFAN
FCNLVMGVALLTLALWAYIRYSGELSDFGGKLDDFATLLWEKFMRPIYHG
CMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKRS*

GH09383.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17217-PA 622 GF17217-PA 1..540 1..539 2744 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11305-PA 626 GG11305-PA 1..539 1..539 2902 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18437-PA 541 GH18437-PA 1..541 1..541 2683 90.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
atl-PC 541 CG6668-PC 1..541 1..541 2819 100 Plus
atl-PB 541 CG6668-PB 1..541 1..541 2819 100 Plus
atl-PA 541 CG6668-PA 1..541 1..541 2819 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24013-PA 539 GI24013-PA 1..539 1..541 2690 91.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13613-PA 542 GL13613-PA 1..542 1..541 2757 94.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19766-PA 542 GA19766-PA 1..542 1..541 2757 94.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26614-PA 626 GM26614-PA 1..539 1..539 2912 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21113-PA 465 GD21113-PA 1..465 1..465 2505 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23644-PA 546 GJ23644-PA 6..546 1..541 2682 92.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10964-PA 540 GK10964-PA 1..540 1..541 2691 92.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23502-PA 628 GE23502-PA 1..539 1..539 2902 98.9 Plus

GH09383.hyp Sequence

Translation from 209 to 1834

> GH09383.hyp
MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKG
KSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILM
WSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQI
YNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYEA
EYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLN
VATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL
IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVC
GGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDL
EEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIFGLVGLYTFAN
FCNLVMGVALLTLALWAYIRYSGELSDFGGKLDDFATLLWEKFMRPIYHG
CMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKRS*

GH09383.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
atl-PC 541 CG6668-PC 1..541 1..541 2819 100 Plus
atl-PB 541 CG6668-PB 1..541 1..541 2819 100 Plus
atl-PA 541 CG6668-PA 1..541 1..541 2819 100 Plus