Clone GH09427 Report

Search the DGRC for GH09427

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:94
Well:27
Vector:pOT2
Associated Gene/TranscriptCG42807-RA
Protein status:GH09427.pep: gold
Preliminary Size:408
Sequenced Size:2662

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6183 2001-01-01 Release 2 assignment
CG13335 2001-01-01 Release 2 assignment
CG13335 2001-09-19 Blastp of sequenced clone
CG13335 2003-01-01 Sim4 clustering to Release 3
CG13335 2008-04-29 Release 5.5 accounting
CG13335 2008-08-15 Release 5.9 accounting
CG13335 2008-12-18 5.12 accounting

Clone Sequence Records

GH09427.complete Sequence

2662 bp (2662 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060263

> GH09427.complete
AATAGATCGAACTGTTGGAAAAGTAAAAACAAAAACAGAGTTCAAAAATG
CCGCTGCGCAAGAAAGAGGACTACATACCCATTAAGTGCGAGGGCTGGAA
CGGCAAGTTCGTGTATCCGGATGGAGCTGTCAATAATGTGTCCAAGATAC
GTCGCCAGAACCAGAACGTAACCAATACCAACAACTTCTACGGATTCAAC
ACGGAACCCATTGTCCTGCCCACCGAATGGGATGGCACCTTCGTGAAGAG
TGGCGAGACCCGCATCAAACAGGAGCGCAATCGATCCGATGACCAGGACT
ACTTTGATTACAACACCGAGCCCACGGTACTGCCCACCACTTGGAGTGGC
GAGTTCGTCAACGATCCCAACGATGTGCGCATTAAGCCGGAACGCAACTT
CTCGGATGCCAGGGATTATGCAGAGGCATCCCGATTCAAACTGGTCCAGC
ACTGAGTGAGATCCCGATCCGCCCGTTTCAATCAAACTAATCCTGCAAAT
GTTGCGTTTGTTTCGGTTTCGCATTGTAATTGTCGCCTAACCTAAGCGTT
TGTTGTATTTTATTTTTTATGATATTTATTCGTATACTTAATAAACCAAA
AAAAAAAAACACTGAAATACTAGAAAGTTCCGTTCCGCAATCGCCTTGGT
GGATTTGCAGTGGGCGGTGGCAATAATTAGTGGCCTTTTATGGACAATAA
TTCGATCAGGTTTGCAAAATCATTTAAATAGCAAGGTATATCGACATATT
GTTAATCAGATATCCATTACAGCAAGTGAAAGTGCGAGAAAGAATTTTCA
AACTTTTTATTGAGATTCGATTAAAATTTGCAAGCAAAATAATAAAACAA
ATAAGAAAAAGCGTTTTTAAAAATTGTTATTATAGTATTTGTTGAGATCA
ACAACAAATGGGGATTGCCTTTTATGAGGTGTATGGAAAACAGCATTTAG
ATTACAAATTACATATATGCATCATTCGCTGATAATACTCACATTCATTA
TGTCGCGATTAAGCCGTGTGACTTCCCACTGATTTGTCCATTGAAAATAC
AAACACTTTTAAATTATAAAATTTTGGAAAGCAAATTGAACATTCATTCA
GGAACTCATTTTCGAAACTGCTCTACACTTTGAACAACCTTTTCGAGTTG
AAAAAAACGCTGGTATTTCAAAGTTATCGCACAACTTATTAGGTTGTTAA
AAAAATACAATTTACGAAACAATTACAAATGTTCGCATAGTATTCACTTC
CTGACCAGACCCAACAGAAGGAATGTTCTTGCCATTTTGTAATATGATAT
TTTGAACCATTCATACAAACTGTTTTTGTGTGAGTCCCCAATCAATAAAA
ACTTCCTTATTGACACACGTTGACGTTCCCATTAAATAACCTTGTTTAGA
GCTTTAAGTTGGCACACGTAATTAATTTTTAACTTTTCGCCTATAAAAGG
CCCCGATAAGAGAGGATAACCACACAAATTCTTAGGAACAACGGCCAAAC
CTTATGTAAACAATTCTTGAGTTGAAAAGTAAATGAAAGCCAATTAAATA
TAGAGGCGGATTTCGGAGCTTGCAAATAAAATTCATTATGGGGGAGCCGC
AGCTGATACGACGACTTTTGCAGGGGAAGTACGTAGAGTGATAAGAAAGT
AGAGAGTATATATAAACAGAGGCTTCCCAATCGTTCGGCACACAGTCAAG
ATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGGCTCTTCTGAGCCTGGT
GGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATGGATCTCTATATACTCC
AGAATCAGCGGCAATATGACGCGAAGATCAAACAGCTGGCAGATGAATTA
GCCAATTTTAAGCAGCTATTTCAGAAGCAAATCAATGCGCTCGATGTGCA
AGCAGATTCGATGCAGCTAAAATTGGAACAAGCCTCCGCTCACCTGGATC
CCATTATCCTGATCGATTCCTGGAGCAAACAATGCGTACAGAACTATAGT
GTTACTATACCAACGATCACCGTGGCCAGGGACTCCATTATCAAGTGTAA
GGAAAGTATTAGTGGCATTTTAAATGCACCTGAGAGCACCTACAACACCC
TGAATAACTACTATAAAAATAACGTGAAGAATGGTTTGGCACAATGCCTA
AAACTTCATCCAACTGCCCAGTTAAATTACACACTCTGTGTAACCAAGGT
GATTGGTGATGCCAATAAGTATACCATCACCACACAGAATACTTTCAATA
CCAACCTGAAGAGTTCGGAATGCACGGCTGATAATCGCATTAGGAACTCC
TGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTACCTCCAAAGTGGAACT
GGCGCTGCAACTCATCGACTCCTGCATTTCCAATAAGGTGATCTGTGGAT
CCTTTGAAGAGCAATCGTGTCCGAATAAGTCATATGTTTCTCTGTCGGAG
ATCAATCCTCGCAACGATACCATCCGGAATCCCTTCAAGTTTGTAACCAA
TGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGTTAAAGTATCCTTACAT
AAATCAAATTCATTCGAGTCAATGAAAATATTACAGCATTTATTAATTTG
TATAGCTTTTGATGTTTAAATAAATATAAATACTATTACCAGCAAAAAAA
AAAAAAAAAAAA

GH09427.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13335-RB 2813 CG13335-RB 32..2674 1..2644 13180 99.9 Plus
CG13335-RA 1526 CG13335-RA 443..1387 1700..2644 4725 100 Plus
CG13335-RA 1526 CG13335-RA 1..443 1..443 2215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9459331..9461530 2201..1 10955 100 Minus
chr2R 21145070 chr2R 9458825..9459267 2643..2201 2215 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13574229 2201..1 10955 100 Minus
2R 25286936 2R 13571523..13571966 2644..2201 2220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13573229..13575428 2201..1 10965 99.9 Minus
2R 25260384 2R 13572722..13573165 2644..2201 2220 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:43:52 has no hits.

GH09427.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:44:30 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9458825..9459266 2202..2643 100 <- Minus
chr2R 9459331..9461530 1..2201 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 16:30:57 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:49 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 1..837 1701..2537 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:44:40 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 1..837 1701..2537 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 21:42:02 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:29 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 1..837 1701..2537 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:33 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1..2642 1..2643 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:48 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 1..953 1691..2643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:44:40 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 1..953 1691..2643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:03 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1..2642 1..2643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:29 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RB 1..1172 1472..2643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:30 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13572030..13574229 1..2201 99   Minus
2R 13571524..13571965 2202..2643 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:30 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13572030..13574229 1..2201 99   Minus
2R 13571524..13571965 2202..2643 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:30 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13572030..13574229 1..2201 99   Minus
2R 13571524..13571965 2202..2643 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:44:40 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459029..9459470 2202..2643 100 <- Minus
arm_2R 9459535..9461734 1..2201 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:15 Download gff for GH09427.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13572723..13573164 2202..2643 100 <- Minus
2R 13573229..13575428 1..2201 99   Minus

GH09427.pep Sequence

Translation from 1700 to 2536

> GH09427.pep
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISS*

GH09427.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11171-PA 274 GF11171-PA 1..271 1..274 832 57.8 Plus
Dana\GF11172-PA 216 GF11172-PA 29..104 25..100 172 40.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22479-PA 410 GG22479-PA 133..408 1..276 1049 83.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22629-PA 256 GH22629-PA 1..252 28..274 552 40.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-PB 278 CG42807-PB 1..278 1..278 1415 100 Plus
CG42807-PA 278 CG13335-PA 1..278 1..278 1415 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20628-PA 284 GI20628-PA 19..280 18..274 578 43.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20264-PA 278 GM20264-PA 1..277 1..277 1409 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25749-PA 410 GD25749-PA 133..409 1..277 1405 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19671-PA 284 GJ19671-PA 26..280 25..274 569 43.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15607-PA 278 GK15607-PA 5..274 5..274 579 42.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13348-PA 410 GE13348-PA 133..408 1..276 1156 89.1 Plus

GH09427.hyp Sequence

Translation from 1700 to 2536

> GH09427.hyp
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISS*

GH09427.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-PB 278 CG42807-PB 1..278 1..278 1415 100 Plus
CG42807-PA 278 CG13335-PA 1..278 1..278 1415 100 Plus