GH09427.complete Sequence
2662 bp (2662 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060263
> GH09427.complete
AATAGATCGAACTGTTGGAAAAGTAAAAACAAAAACAGAGTTCAAAAATG
CCGCTGCGCAAGAAAGAGGACTACATACCCATTAAGTGCGAGGGCTGGAA
CGGCAAGTTCGTGTATCCGGATGGAGCTGTCAATAATGTGTCCAAGATAC
GTCGCCAGAACCAGAACGTAACCAATACCAACAACTTCTACGGATTCAAC
ACGGAACCCATTGTCCTGCCCACCGAATGGGATGGCACCTTCGTGAAGAG
TGGCGAGACCCGCATCAAACAGGAGCGCAATCGATCCGATGACCAGGACT
ACTTTGATTACAACACCGAGCCCACGGTACTGCCCACCACTTGGAGTGGC
GAGTTCGTCAACGATCCCAACGATGTGCGCATTAAGCCGGAACGCAACTT
CTCGGATGCCAGGGATTATGCAGAGGCATCCCGATTCAAACTGGTCCAGC
ACTGAGTGAGATCCCGATCCGCCCGTTTCAATCAAACTAATCCTGCAAAT
GTTGCGTTTGTTTCGGTTTCGCATTGTAATTGTCGCCTAACCTAAGCGTT
TGTTGTATTTTATTTTTTATGATATTTATTCGTATACTTAATAAACCAAA
AAAAAAAAACACTGAAATACTAGAAAGTTCCGTTCCGCAATCGCCTTGGT
GGATTTGCAGTGGGCGGTGGCAATAATTAGTGGCCTTTTATGGACAATAA
TTCGATCAGGTTTGCAAAATCATTTAAATAGCAAGGTATATCGACATATT
GTTAATCAGATATCCATTACAGCAAGTGAAAGTGCGAGAAAGAATTTTCA
AACTTTTTATTGAGATTCGATTAAAATTTGCAAGCAAAATAATAAAACAA
ATAAGAAAAAGCGTTTTTAAAAATTGTTATTATAGTATTTGTTGAGATCA
ACAACAAATGGGGATTGCCTTTTATGAGGTGTATGGAAAACAGCATTTAG
ATTACAAATTACATATATGCATCATTCGCTGATAATACTCACATTCATTA
TGTCGCGATTAAGCCGTGTGACTTCCCACTGATTTGTCCATTGAAAATAC
AAACACTTTTAAATTATAAAATTTTGGAAAGCAAATTGAACATTCATTCA
GGAACTCATTTTCGAAACTGCTCTACACTTTGAACAACCTTTTCGAGTTG
AAAAAAACGCTGGTATTTCAAAGTTATCGCACAACTTATTAGGTTGTTAA
AAAAATACAATTTACGAAACAATTACAAATGTTCGCATAGTATTCACTTC
CTGACCAGACCCAACAGAAGGAATGTTCTTGCCATTTTGTAATATGATAT
TTTGAACCATTCATACAAACTGTTTTTGTGTGAGTCCCCAATCAATAAAA
ACTTCCTTATTGACACACGTTGACGTTCCCATTAAATAACCTTGTTTAGA
GCTTTAAGTTGGCACACGTAATTAATTTTTAACTTTTCGCCTATAAAAGG
CCCCGATAAGAGAGGATAACCACACAAATTCTTAGGAACAACGGCCAAAC
CTTATGTAAACAATTCTTGAGTTGAAAAGTAAATGAAAGCCAATTAAATA
TAGAGGCGGATTTCGGAGCTTGCAAATAAAATTCATTATGGGGGAGCCGC
AGCTGATACGACGACTTTTGCAGGGGAAGTACGTAGAGTGATAAGAAAGT
AGAGAGTATATATAAACAGAGGCTTCCCAATCGTTCGGCACACAGTCAAG
ATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGGCTCTTCTGAGCCTGGT
GGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATGGATCTCTATATACTCC
AGAATCAGCGGCAATATGACGCGAAGATCAAACAGCTGGCAGATGAATTA
GCCAATTTTAAGCAGCTATTTCAGAAGCAAATCAATGCGCTCGATGTGCA
AGCAGATTCGATGCAGCTAAAATTGGAACAAGCCTCCGCTCACCTGGATC
CCATTATCCTGATCGATTCCTGGAGCAAACAATGCGTACAGAACTATAGT
GTTACTATACCAACGATCACCGTGGCCAGGGACTCCATTATCAAGTGTAA
GGAAAGTATTAGTGGCATTTTAAATGCACCTGAGAGCACCTACAACACCC
TGAATAACTACTATAAAAATAACGTGAAGAATGGTTTGGCACAATGCCTA
AAACTTCATCCAACTGCCCAGTTAAATTACACACTCTGTGTAACCAAGGT
GATTGGTGATGCCAATAAGTATACCATCACCACACAGAATACTTTCAATA
CCAACCTGAAGAGTTCGGAATGCACGGCTGATAATCGCATTAGGAACTCC
TGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTACCTCCAAAGTGGAACT
GGCGCTGCAACTCATCGACTCCTGCATTTCCAATAAGGTGATCTGTGGAT
CCTTTGAAGAGCAATCGTGTCCGAATAAGTCATATGTTTCTCTGTCGGAG
ATCAATCCTCGCAACGATACCATCCGGAATCCCTTCAAGTTTGTAACCAA
TGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGTTAAAGTATCCTTACAT
AAATCAAATTCATTCGAGTCAATGAAAATATTACAGCATTTATTAATTTG
TATAGCTTTTGATGTTTAAATAAATATAAATACTATTACCAGCAAAAAAA
AAAAAAAAAAAA
GH09427.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13335-RB | 2813 | CG13335-RB | 32..2674 | 1..2644 | 13180 | 99.9 | Plus |
CG13335-RA | 1526 | CG13335-RA | 443..1387 | 1700..2644 | 4725 | 100 | Plus |
CG13335-RA | 1526 | CG13335-RA | 1..443 | 1..443 | 2215 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 9459331..9461530 | 2201..1 | 10955 | 100 | Minus |
chr2R | 21145070 | chr2R | 9458825..9459267 | 2643..2201 | 2215 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13574229 | 2201..1 | 10955 | 100 | Minus |
2R | 25286936 | 2R | 13571523..13571966 | 2644..2201 | 2220 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 13573229..13575428 | 2201..1 | 10965 | 99.9 | Minus |
2R | 25260384 | 2R | 13572722..13573165 | 2644..2201 | 2220 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 17:43:52 has no hits.
GH09427.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:44:30 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 9458825..9459266 | 2202..2643 | 100 | <- | Minus |
chr2R | 9459331..9461530 | 1..2201 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 16:30:57 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:49 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 1..837 | 1701..2537 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:44:40 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 1..837 | 1701..2537 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 21:42:02 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:29 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 1..837 | 1701..2537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:33 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1..2642 | 1..2643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:48 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 1..953 | 1691..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:44:40 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 1..953 | 1691..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:03 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1..2642 | 1..2643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:29 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RB | 1..1172 | 1472..2643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:30 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13572030..13574229 | 1..2201 | 99 | | Minus |
2R | 13571524..13571965 | 2202..2643 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:30 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13572030..13574229 | 1..2201 | 99 | | Minus |
2R | 13571524..13571965 | 2202..2643 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:30 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13572030..13574229 | 1..2201 | 99 | | Minus |
2R | 13571524..13571965 | 2202..2643 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:44:40 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459029..9459470 | 2202..2643 | 100 | <- | Minus |
arm_2R | 9459535..9461734 | 1..2201 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:15 Download gff for
GH09427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13572723..13573164 | 2202..2643 | 100 | <- | Minus |
2R | 13573229..13575428 | 1..2201 | 99 | | Minus |
GH09427.pep Sequence
Translation from 1700 to 2536
> GH09427.pep
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISS*
GH09427.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11171-PA | 274 | GF11171-PA | 1..271 | 1..274 | 832 | 57.8 | Plus |
Dana\GF11172-PA | 216 | GF11172-PA | 29..104 | 25..100 | 172 | 40.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG22479-PA | 410 | GG22479-PA | 133..408 | 1..276 | 1049 | 83.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH22629-PA | 256 | GH22629-PA | 1..252 | 28..274 | 552 | 40.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-PB | 278 | CG42807-PB | 1..278 | 1..278 | 1415 | 100 | Plus |
CG42807-PA | 278 | CG13335-PA | 1..278 | 1..278 | 1415 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI20628-PA | 284 | GI20628-PA | 19..280 | 18..274 | 578 | 43.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM20264-PA | 278 | GM20264-PA | 1..277 | 1..277 | 1409 | 97.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25749-PA | 410 | GD25749-PA | 133..409 | 1..277 | 1405 | 96.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ19671-PA | 284 | GJ19671-PA | 26..280 | 25..274 | 569 | 43.5 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK15607-PA | 278 | GK15607-PA | 5..274 | 5..274 | 579 | 42.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE13348-PA | 410 | GE13348-PA | 133..408 | 1..276 | 1156 | 89.1 | Plus |
GH09427.hyp Sequence
Translation from 1700 to 2536
> GH09427.hyp
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISS*
GH09427.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-PB | 278 | CG42807-PB | 1..278 | 1..278 | 1415 | 100 | Plus |
CG42807-PA | 278 | CG13335-PA | 1..278 | 1..278 | 1415 | 100 | Plus |