Clone GH09439 Report

Search the DGRC for GH09439

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:94
Well:39
Vector:pOT2
Associated Gene/TranscriptCSN4-RA
Protein status:GH09439.pep: gold
Preliminary Size:2200
Sequenced Size:1440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8725 2001-01-01 Release 2 assignment
CG8725 2003-01-01 Sim4 clustering to Release 3
CG8725 2003-02-22 Blastp of sequenced clone
CSN4 2008-04-29 Release 5.5 accounting
CSN4 2008-08-15 Release 5.9 accounting
CSN4 2008-12-18 5.12 accounting

Clone Sequence Records

GH09439.complete Sequence

1440 bp (1440 high quality bases) assembled on 2003-02-22

GenBank Submission: BT004883

> GH09439.complete
AAGTAATTGGGTATAGAAGTGAATATGGCCGCAAACTACGGCATCTCGAC
GGCAGCTCTGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGC
ACAAGGACCAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACG
AACACCGGCCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCAT
TGTAAACGAGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACG
TGGGCAGCGAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCT
CACTTCACCCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCA
AGTGGCTGGCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGC
AGTGGCGCGATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGT
CAGAAACAGTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGC
TCGACTCTATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCA
ACCGGGCATCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTT
CTATATAAAGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTAT
CGAGGCCGCCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACC
AAGGCGAGAGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTC
GCCTCTGCCGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGA
TGAACGCTGTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACT
TGGAGCGCATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTG
CAGGACCACCAAAAGGCTGCCACCTCCGATGGATCCTCGATCTTGGATCG
GGCTGTTTTCGAGCACAATCTGTTGTCGGCTAGTAAGCTGTACAACAACA
TAACTTTTGAGGAGCTAGGCGCTCTGCTGGACATACCCGCGGTGAAAGCA
GAGAAGATTGCCTCTCAGATGATTACCGAAGGTCGCATGAACGGACACAT
CGACCAGATCTCGGCCATTGTGCACTTCGAGAATCGGGAACTACTGCCTC
AGTGGGATAGGCAGATCCAGTCGCTATGCTATCAGGTTAATTCCATTATA
GAGAAGATAAGTGTCGCCGAGCCCGATTGGATGGATAACCTGAACTGAAG
CAGGCTCTCGCCATCCCATCTCCCCCCACTCATCTTAATTAAAAAACGGC
ATATAGGAACGCAGTGAATCGGAGGATATAACCCCCGACTGCGATAGATT
TCATTTTAAAATTATAAAAATAAATGAAATTATGTACATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH09439.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-RB 1699 CSN4-RB 246..1636 1..1391 6955 100 Plus
CSN4-RA 1708 CSN4-RA 255..1645 1..1391 6955 100 Plus
CSN4.a 1754 CSN4.a 301..1691 1..1391 6955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3860641..3861435 596..1390 3975 100 Plus
chr2R 21145070 chr2R 3859987..3860585 1..599 2995 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7973246..7974041 596..1391 3980 100 Plus
2R 25286936 2R 7972592..7973190 1..599 2995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7974445..7975240 596..1391 3980 100 Plus
2R 25260384 2R 7973791..7974389 1..599 2995 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:54:20 has no hits.

GH09439.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:55:22 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3859987..3860583 1..597 100 -> Plus
chr2R 3860643..3861392 598..1347 100 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:01 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 1..1224 25..1248 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:13 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RB 1..1224 25..1248 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:47 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 1..1224 25..1248 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:34 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 1..1224 25..1248 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:07 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 1..1224 25..1248 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:49 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 255..1644 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:12 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RB 19..1408 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:47 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 255..1644 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:34 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 255..1644 1..1390 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:07 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
CSN4-RA 255..1644 1..1390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:22 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7972592..7973188 1..597 100 -> Plus
2R 7973248..7974040 598..1390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:22 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7972592..7973188 1..597 100 -> Plus
2R 7973248..7974040 598..1390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:22 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7972592..7973188 1..597 100 -> Plus
2R 7973248..7974040 598..1390 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:47 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3860097..3860693 1..597 100 -> Plus
arm_2R 3860753..3861545 598..1390 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:59 Download gff for GH09439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7973791..7974387 1..597 100 -> Plus
2R 7974447..7975239 598..1390 100   Plus

GH09439.pep Sequence

Translation from 24 to 1247

> GH09439.pep
MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID
GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN
PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC
KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR
VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS
RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT
SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI
TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP
DWMDNLN*

GH09439.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13652-PA 403 GF13652-PA 2..403 6..407 2088 97.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23321-PA 412 GG23321-PA 1..412 1..407 2121 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21894-PA 403 GH21894-PA 2..403 6..407 2027 94.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-PB 407 CG8725-PB 1..407 1..407 2047 100 Plus
CSN4-PA 407 CG8725-PA 1..407 1..407 2047 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20393-PA 403 GI20393-PA 2..403 6..407 2025 94.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11479-PA 403 GL11479-PA 2..403 6..407 2042 95.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21282-PA 403 GA21282-PA 2..403 6..407 2042 95.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20998-PA 412 GM20998-PA 1..412 1..407 2127 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10529-PA 412 GD10529-PA 1..412 1..407 2127 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22119-PA 403 GJ22119-PA 2..403 6..407 2028 94.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21741-PA 403 GK21741-PA 3..403 7..407 2052 96 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19166-PA 412 GE19166-PA 1..412 1..407 2107 96.6 Plus

GH09439.hyp Sequence

Translation from 24 to 1247

> GH09439.hyp
MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID
GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN
PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC
KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR
VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS
RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT
SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI
TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP
DWMDNLN*

GH09439.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CSN4-PB 407 CG8725-PB 1..407 1..407 2047 100 Plus
CSN4-PA 407 CG8725-PA 1..407 1..407 2047 100 Plus