BDGP Sequence Production Resources |
Search the DGRC for GH09439
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 94 |
Well: | 39 |
Vector: | pOT2 |
Associated Gene/Transcript | CSN4-RA |
Protein status: | GH09439.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1440 |
Gene | Date | Evidence |
---|---|---|
CG8725 | 2001-01-01 | Release 2 assignment |
CG8725 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8725 | 2003-02-22 | Blastp of sequenced clone |
CSN4 | 2008-04-29 | Release 5.5 accounting |
CSN4 | 2008-08-15 | Release 5.9 accounting |
CSN4 | 2008-12-18 | 5.12 accounting |
1440 bp (1440 high quality bases) assembled on 2003-02-22
GenBank Submission: BT004883
> GH09439.complete AAGTAATTGGGTATAGAAGTGAATATGGCCGCAAACTACGGCATCTCGAC GGCAGCTCTGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGC ACAAGGACCAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACG AACACCGGCCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCAT TGTAAACGAGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACG TGGGCAGCGAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCT CACTTCACCCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCA AGTGGCTGGCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGC AGTGGCGCGATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGT CAGAAACAGTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGC TCGACTCTATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCA ACCGGGCATCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTT CTATATAAAGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTAT CGAGGCCGCCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACC AAGGCGAGAGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTC GCCTCTGCCGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGA TGAACGCTGTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACT TGGAGCGCATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTG CAGGACCACCAAAAGGCTGCCACCTCCGATGGATCCTCGATCTTGGATCG GGCTGTTTTCGAGCACAATCTGTTGTCGGCTAGTAAGCTGTACAACAACA TAACTTTTGAGGAGCTAGGCGCTCTGCTGGACATACCCGCGGTGAAAGCA GAGAAGATTGCCTCTCAGATGATTACCGAAGGTCGCATGAACGGACACAT CGACCAGATCTCGGCCATTGTGCACTTCGAGAATCGGGAACTACTGCCTC AGTGGGATAGGCAGATCCAGTCGCTATGCTATCAGGTTAATTCCATTATA GAGAAGATAAGTGTCGCCGAGCCCGATTGGATGGATAACCTGAACTGAAG CAGGCTCTCGCCATCCCATCTCCCCCCACTCATCTTAATTAAAAAACGGC ATATAGGAACGCAGTGAATCGGAGGATATAACCCCCGACTGCGATAGATT TCATTTTAAAATTATAAAAATAAATGAAATTATGTACATTAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3859987..3860583 | 1..597 | 100 | -> | Plus |
chr2R | 3860643..3861392 | 598..1347 | 100 | <- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 1..1224 | 25..1248 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RB | 1..1224 | 25..1248 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 1..1224 | 25..1248 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 1..1224 | 25..1248 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 1..1224 | 25..1248 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 255..1644 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RB | 19..1408 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 255..1644 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 255..1644 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CSN4-RA | 255..1644 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7972592..7973188 | 1..597 | 100 | -> | Plus |
2R | 7973248..7974040 | 598..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7972592..7973188 | 1..597 | 100 | -> | Plus |
2R | 7973248..7974040 | 598..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7972592..7973188 | 1..597 | 100 | -> | Plus |
2R | 7973248..7974040 | 598..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3860097..3860693 | 1..597 | 100 | -> | Plus |
arm_2R | 3860753..3861545 | 598..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7973791..7974387 | 1..597 | 100 | -> | Plus |
2R | 7974447..7975239 | 598..1390 | 100 | Plus |
Translation from 24 to 1247
> GH09439.pep MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP DWMDNLN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13652-PA | 403 | GF13652-PA | 2..403 | 6..407 | 2088 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23321-PA | 412 | GG23321-PA | 1..412 | 1..407 | 2121 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21894-PA | 403 | GH21894-PA | 2..403 | 6..407 | 2027 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CSN4-PB | 407 | CG8725-PB | 1..407 | 1..407 | 2047 | 100 | Plus |
CSN4-PA | 407 | CG8725-PA | 1..407 | 1..407 | 2047 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20393-PA | 403 | GI20393-PA | 2..403 | 6..407 | 2025 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11479-PA | 403 | GL11479-PA | 2..403 | 6..407 | 2042 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21282-PA | 403 | GA21282-PA | 2..403 | 6..407 | 2042 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20998-PA | 412 | GM20998-PA | 1..412 | 1..407 | 2127 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10529-PA | 412 | GD10529-PA | 1..412 | 1..407 | 2127 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22119-PA | 403 | GJ22119-PA | 2..403 | 6..407 | 2028 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21741-PA | 403 | GK21741-PA | 3..403 | 7..407 | 2052 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19166-PA | 412 | GE19166-PA | 1..412 | 1..407 | 2107 | 96.6 | Plus |
Translation from 24 to 1247
> GH09439.hyp MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP DWMDNLN*