Clone GH09573 Report

Search the DGRC for GH09573

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:95
Well:73
Vector:pOT2
Associated Gene/TranscriptCG5282-RA
Protein status:GH09573.pep: gold
Preliminary Size:1436
Sequenced Size:1530

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5282 2001-01-01 Release 2 assignment
CG5282 2002-03-19 Blastp of sequenced clone
CG5282 2003-01-01 Sim4 clustering to Release 3
CG5282 2008-04-29 Release 5.5 accounting
CG5282 2008-08-15 Release 5.9 accounting
CG5282 2008-12-18 5.12 accounting

Clone Sequence Records

GH09573.complete Sequence

1530 bp (1530 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094694

> GH09573.complete
CAGTGCAAGCTTGTTGAATTGAATCACAATCTACGGTAGGAAACCTCGGG
TAGGCAAGAGTTTGGGAACCAGACGATGCAATGAATCCCGTACCGAGCCG
CGAGTTCCTGGAGGTTCATCCGCTGCACCAGCATCAACCACACTGTAAGC
AGCAATGTTTTGTATTCACGGAGATAGCGGACATCGAACTGCCCGCGGAG
ATAACCAAGTTCGGAGGTGGAAATGAAAAGATTAGGTGCTCCAACGGGGG
CATCCCCACTTACAGCTCCAAGAAGGACTCCTGCAGCGAGTCCTCTGCGG
AGAGACCAGAGAGATCACGAGGACGAAAGATTTTGCTGGGCGTTGGTGTG
GTGCTCGTGTGCATTGCCATGGCGGGTGGTATTCCGCTGGCCCTCCAGTT
GCGCTCTTCGTCGCTCCTGGAGGCCCGACTCGCCTTCATCCGCCGCCTGC
TGACGGAGTCTCCACTGATCGAGGGCTCGTGGAAGCCACCGAGCACCATG
AGCCTGAACAGCAGCAACCTCTTCGAGGTGCGACAGAATCACATCGGTGC
TGTGCTCTGGCCCATTGCTGTGCCGTGCGGAGCTCAGTACTTGGATGCCG
TGCAGCTCACACTGGAGGGCATTGATAGGGCCAAGCGGATTACCGCCGCC
ACAGATTCCATGCACATCGTCGAATCAGCTGATGAAATGGAGCAGACTCA
CATCCGCGGCGAGGTGGCTGTTCTCATGGGTATCAGTGGTGGCCATGCTC
TGGGCACCAGCACGGCCGTCTTGCGTTCCATCTACCTGCTGGGAGCACGA
TTCGTCTCGATTACGAGCCTGGAGTGCACCACTCCTTGGGCGGCGGCAGC
AATCCGGAGACCCGATTATCTTGTTGAGGAAAATGTTACGAATTCATTCA
ACGAATTTGGACAGACCATGCTCTTTGAGATGAACCGCCTGGGCATGCTG
GTGGAGATTTCGATGCTCAGCGAGGCTGCCATGTTGGCTGTTTTGAAAAC
TGCCAAAGCTCCTGTTTTACTCACGAATGCCACACCGCTGTCCATGTGCA
ATAGCAGCAACATTGCTTCCATTCCAGACCACGTCCTCAGCCTATTGCCG
GAAAATGGAGGCGTAATCTTGCTCAACCTGGAGCGTTGTGGCGATCGGAC
ACTGGGCGTTCGCGAGGCCATCACTGCAATCAACTATGTGCGCAAGGTAG
CCGGAGTGGATCACATTGGACTTGGAGGAGCTCCGAAGAGCTATGCCCTC
CTACTTGCCGAACTGGCAAGGGATAGGGTGTGGGGCAATGCTGCTATTAA
GAAGCTGGTTGGGGGAAATGTGATGCGGATTCTGCGGGAGATCGAGACCC
TGAAGAATCGATTGCCCTTGTATGAGGAGTGGATTCCGCACGAGTCCATC
GAAAGCAATTCCTATTGCCGATATCCCGAGTCTTAGAACCAACTTCTTTT
ACAGACTCAAGCGATTGTTCTCACATAATTACTAAAATATTTAATTAAAT
TATTAAAGTACAAAAAAAAAAAAAAAAAAA

GH09573.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-RA 1704 CG5282-RA 150..1662 1..1513 7550 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20414132..20415045 914..1 4540 99.8 Minus
chr3L 24539361 chr3L 20413430..20413853 1511..1088 2120 100 Minus
chr3L 24539361 chr3L 20413904..20414081 1090..913 890 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:40:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20425126..20426039 914..1 4555 99.9 Minus
3L 28110227 3L 20424422..20424847 1513..1088 2130 100 Minus
3L 28110227 3L 20424898..20425075 1090..913 890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20418226..20419139 914..1 4555 99.8 Minus
3L 28103327 3L 20417522..20417947 1513..1088 2130 100 Minus
3L 28103327 3L 20417998..20418175 1090..913 890 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:09:08 has no hits.

GH09573.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:10:09 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20413472..20413850 1091..1469 100 <- Minus
chr3L 20413904..20414079 915..1090 100 <- Minus
chr3L 20414132..20415045 1..914 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:10 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 1..1356 81..1436 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:05 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 1..1356 81..1436 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:56:37 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 1..1356 81..1436 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:27 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 1..1356 81..1436 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:57:16 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 1..1356 81..1436 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:11 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 75..1585 1..1511 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:05 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 75..1585 1..1511 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:37 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 33..1543 1..1511 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:27 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 75..1585 1..1511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:57:16 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 33..1543 1..1511 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:09 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20424424..20424844 1091..1511 100 <- Minus
3L 20424898..20425073 915..1090 100 <- Minus
3L 20425126..20426039 1..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:09 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20424424..20424844 1091..1511 100 <- Minus
3L 20424898..20425073 915..1090 100 <- Minus
3L 20425126..20426039 1..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:10:09 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20424424..20424844 1091..1511 100 <- Minus
3L 20424898..20425073 915..1090 100 <- Minus
3L 20425126..20426039 1..914 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:37 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20417524..20417944 1091..1511 100 <- Minus
arm_3L 20417998..20418173 915..1090 100 <- Minus
arm_3L 20418226..20419139 1..914 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:12 Download gff for GH09573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20417524..20417944 1091..1511 100 <- Minus
3L 20417998..20418173 915..1090 100 <- Minus
3L 20418226..20419139 1..914 99   Minus

GH09573.hyp Sequence

Translation from 80 to 1435

> GH09573.hyp
MNPVPSREFLEVHPLHQHQPHCKQQCFVFTEIADIELPAEITKFGGGNEK
IRCSNGGIPTYSSKKDSCSESSAERPERSRGRKILLGVGVVLVCIAMAGG
IPLALQLRSSSLLEARLAFIRRLLTESPLIEGSWKPPSTMSLNSSNLFEV
RQNHIGAVLWPIAVPCGAQYLDAVQLTLEGIDRAKRITAATDSMHIVESA
DEMEQTHIRGEVAVLMGISGGHALGTSTAVLRSIYLLGARFVSITSLECT
TPWAAAAIRRPDYLVEENVTNSFNEFGQTMLFEMNRLGMLVEISMLSEAA
MLAVLKTAKAPVLLTNATPLSMCNSSNIASIPDHVLSLLPENGGVILLNL
ERCGDRTLGVREAITAINYVRKVAGVDHIGLGGAPKSYALLLAELARDRV
WGNAAIKKLVGGNVMRILREIETLKNRLPLYEEWIPHESIESNSYCRYPE
S*

GH09573.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-PA 451 CG5282-PA 1..451 1..451 2302 100 Plus
CG6154-PD 434 CG6154-PD 29..429 91..448 529 32.8 Plus
CG6154-PC 434 CG6154-PC 29..429 91..448 529 32.8 Plus
CG42750-PC 1067 CG42750-PC 645..1040 69..426 501 32.9 Plus
CG42750-PB 1068 CG42750-PB 646..1041 69..426 501 32.9 Plus

GH09573.pep Sequence

Translation from 80 to 1435

> GH09573.pep
MNPVPSREFLEVHPLHQHQPHCKQQCFVFTEIADIELPAEITKFGGGNEK
IRCSNGGIPTYSSKKDSCSESSAERPERSRGRKILLGVGVVLVCIAMAGG
IPLALQLRSSSLLEARLAFIRRLLTESPLIEGSWKPPSTMSLNSSNLFEV
RQNHIGAVLWPIAVPCGAQYLDAVQLTLEGIDRAKRITAATDSMHIVESA
DEMEQTHIRGEVAVLMGISGGHALGTSTAVLRSIYLLGARFVSITSLECT
TPWAAAAIRRPDYLVEENVTNSFNEFGQTMLFEMNRLGMLVEISMLSEAA
MLAVLKTAKAPVLLTNATPLSMCNSSNIASIPDHVLSLLPENGGVILLNL
ERCGDRTLGVREAITAINYVRKVAGVDHIGLGGAPKSYALLLAELARDRV
WGNAAIKKLVGGNVMRILREIETLKNRLPLYEEWIPHESIESNSYCRYPE
S*

GH09573.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24137-PA 451 GF24137-PA 1..451 1..451 2348 97.8 Plus
Dana\GF18954-PA 403 GF18954-PA 45..397 108..422 502 33.3 Plus
Dana\GF24505-PA 523 GF24505-PA 202..497 134..426 476 35.4 Plus
Dana\GF14853-PA 183 GF14853-PA 1..156 284..426 255 34.4 Plus
Dana\GF14854-PA 809 GF14854-PA 276..374 159..257 218 44 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13315-PA 451 GG13315-PA 1..451 1..451 2384 99.8 Plus
Dere\GG11471-PA 434 GG11471-PA 29..429 91..448 547 32.8 Plus
Dere\GG21716-PA 307 GG21716-PA 2..280 159..426 466 36.2 Plus
Dere\GG13877-PA 521 GG13877-PA 208..495 145..426 461 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16749-PA 451 GH16749-PA 1..451 1..451 2146 88.9 Plus
Dgri\GH19412-PA 432 GH19412-PA 49..427 113..448 546 33.7 Plus
Dgri\GH16719-PA 542 GH16719-PA 221..516 134..426 475 36.2 Plus
Dgri\GH10539-PA 640 GH10539-PA 371..586 69..257 271 33.6 Plus
Dgri\GH10541-PA 183 GH10541-PA 1..156 284..426 253 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-PA 451 CG5282-PA 1..451 1..451 2302 100 Plus
CG6154-PD 434 CG6154-PD 29..429 91..448 529 32.8 Plus
CG6154-PC 434 CG6154-PC 29..429 91..448 529 32.8 Plus
CG42750-PC 1067 CG42750-PC 645..1040 69..426 501 32.9 Plus
CG42750-PB 1068 CG42750-PB 646..1041 69..426 501 32.9 Plus
CG44837-PC 801 CG44837-PC 366..775 54..426 467 31.2 Plus
CG44837-PD 866 CG44837-PD 366..775 54..426 467 31.2 Plus
CG44837-PB 964 CG44837-PB 529..938 54..426 467 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13474-PA 451 GI13474-PA 1..451 1..451 2110 87.1 Plus
Dmoj\GI22615-PA 436 GI22615-PA 53..431 113..448 554 34.7 Plus
Dmoj\GI13799-PA 527 GI13799-PA 214..501 145..426 474 35.9 Plus
Dmoj\GI20857-PA 646 GI20857-PA 410..625 69..257 271 33.6 Plus
Dmoj\GI20879-PA 183 GI20879-PA 1..156 284..426 256 34.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11908-PA 451 GL11908-PA 1..451 1..451 2170 91.4 Plus
Dper\GL21839-PA 433 GL21839-PA 47..428 110..448 551 33.9 Plus
Dper\GL19436-PA 443 GL19436-PA 251..416 274..426 280 35.3 Plus
Dper\GL19435-PA 298 GL19435-PA 58..275 83..257 238 32.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18784-PA 451 GA18784-PA 1..451 1..451 2176 91.8 Plus
Dpse\GA19396-PA 433 GA19396-PA 47..428 110..448 551 33.9 Plus
Dpse\GA20160-PA 328 GA20160-PA 2..301 159..426 461 35.7 Plus
Dpse\GA19227-PA 312 GA19227-PA 4..286 150..426 459 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22218-PA 451 GM22218-PA 1..451 1..451 2382 99.8 Plus
Dsec\GM10315-PA 404 GM10315-PA 46..398 108..422 503 33.3 Plus
Dsec\GM24697-PA 521 GM24697-PA 208..495 145..426 459 35.2 Plus
Dsec\GM17097-PA 183 GM17097-PA 1..156 284..426 255 34.4 Plus
Dsec\GM17096-PA 551 GM17096-PA 18..116 159..257 215 44 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12190-PA 451 GD12190-PA 1..451 1..451 2384 100 Plus
Dsim\GD21276-PA 404 GD21276-PA 29..398 91..422 503 32.9 Plus
Dsim\GD21841-PA 330 GD21841-PA 23..303 157..426 468 36.3 Plus
Dsim\GD12767-PA 521 GD12767-PA 208..495 145..426 458 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11837-PA 459 GJ11837-PA 1..459 1..451 2091 85.8 Plus
Dvir\GJ23861-PA 434 GJ23861-PA 51..429 113..448 551 34.2 Plus
Dvir\GJ11668-PA 465 GJ11668-PA 144..439 134..426 478 35.6 Plus
Dvir\GJ19849-PA 183 GJ19849-PA 1..156 284..426 253 33.8 Plus
Dvir\GJ19848-PA 920 GJ19848-PA 128..291 157..325 218 34.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17400-PA 451 GK17400-PA 1..451 1..451 2133 87.4 Plus
Dwil\GK13967-PA 636 GK13967-PA 35..417 109..448 544 34.1 Plus
Dwil\GK13640-PA 509 GK13640-PA 209..483 145..426 489 37.3 Plus
Dwil\GK14581-PA 183 GK14581-PA 1..156 284..426 255 34.4 Plus
Dwil\GK14579-PA 705 GK14579-PA 430..667 69..257 241 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22404-PA 451 GE22404-PA 1..451 1..451 2376 99.6 Plus
Dyak\GE23663-PA 434 GE23663-PA 29..429 91..448 546 32.8 Plus
Dyak\GE20168-PA 521 GE20168-PA 200..495 134..426 460 35.2 Plus
Dyak\GE12740-PA 183 GE12740-PA 1..156 284..426 253 34.4 Plus
Dyak\GE12739-PA 544 GE12739-PA 11..109 159..257 216 44 Plus