Clone GH09628 Report

Search the DGRC for GH09628

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:96
Well:28
Vector:pOT2
Associated Gene/TranscriptCG2121-RA
Protein status:GH09628.pep: gold
Preliminary Size:2200
Sequenced Size:1907

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2121 2001-01-01 Release 2 assignment
CG2121 2001-09-19 Blastp of sequenced clone
CG2121 2003-01-01 Sim4 clustering to Release 3
CG2121 2008-04-29 Release 5.5 accounting
CG2121 2008-08-15 Release 5.9 accounting
CG2121 2008-12-18 5.12 accounting

Clone Sequence Records

GH09628.complete Sequence

1907 bp (1907 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058326

> GH09628.complete
AAACGGTTCACTTCAATCCGATCAGCTCTAACGGACACCTGTTTCTAAAA
GCCATTCAAATTTCCTTTTTTGGGCTGTCAAGATTGTAAAGAAATATTCA
ATTCAGGGCCTGCTGACCCCTGACCCCGAACTGGACATGGTTTACCCCAG
TGACACGTCGGACGCCAACAACGAGGAGCTGGCGCTGGAGCACAGTGTTG
CACATGGCAATGTCCACGGTAACGGCACTGGCACTGGTGGTAGCTCACCC
GGGACAACAACTGCTCCGAACGGGGACAACAAAGTCAATCAGCGCCATTA
CGAGCCGGCCGAGCGCTTCATCATCACCAAGAACGTGGTCGTGATAGGCC
TGGCTTTCATGATTCACTTCACGGCCTTCCACGGCACATCGAATCTGCAG
AGCTCGGTGAACGCGGATAAGGCCCTGGGCACCACCACGCTTGCCGTCAT
CTACGGCTCGCTGATACTGTCCAACATCTTCCTGCCGATGACCGTGATAA
GATGGTTCGGTTGCCGGTTGACCATGGCGCTGGCCCTCTTCGCCTACATG
CCCTACATAGCCGCCCAGTTTTACCCACGGTTCGAGACCCTAATCCCGGC
GGCCCTGATGGTGGGTTTCGGTGGCGGGCCATTGTGGTGCTCCAAGTGCA
CCTACCTATCCACCGTCTCCGAGGCACTTACCCAGGTGCGGGGCAACAAG
TCGCGTAAGGATGTGAACACCGTCAAGTTCTTCGGCCTGTTCTTCATCTT
CTACCAGATGGCCCAGGTGTGGGGCAACCTCATATCCTCCTCGGTTCTAA
CCCTGAGTGCCCCTGCTGCCCAATCCGCGGCAAATGATTCTTTCGAGCTG
GAGGTGCAGCGGGAACTGGAGAGAAACAGGGTGGCCGAACTCTGCGGGGC
CCGTTTCTGTCCCGGAGTGGGAGCAGAGGCCAATCCAAACCTAGTGCCCC
CAGCTCCGGAGCAGATCCAGCTGCTCAACTCCATCTTCCTCACCTGCATG
GCAGCGGCGGTGGTCATGATGATCTTCGGCGTGAGCTCCCTCAAACGCTA
TGGAGTAAAGCGCGGAGACACTGGCGACGGGATGTCGGGGCTAAAGCTCC
TCACGGTGACCATAAATCTTCTGCGCAAACGTCGCCAAATCCTGATGCTG
CCCATCACGATGTTCATCGGGCTGGAGGAGGCCTTCCTGGCCGTGGACTT
CACCCGTTCGTTTGTGGCCTGCGGATGGGGGATCTCTAGAATCGGGTTCG
CAATGATATGCTTTGGCGTGGCGAATGCGGTGGCTGCCGGGATCGCAGGC
GCGCTGGTGGAGCGCATTGGACGGGTCACTCTGGCCGCACTATGTGCCGT
GGTCAACCTCTGTCTGCTCACCTACATGTACACCTGGGAAGCGCGAGAGG
GCGACTATATGAGCTACTGCACCTTTGCGGCGGTTTGGGGCATCTGCGAT
GGAGTCTGGCTGGTTGTGGTCAATGCTTTTTATGGCATTCTGTTTCCGAA
CCATCTGATTGCCGCTTATAGCAACTTCCGCCTGTGGGAAAGCACTGGTT
CTGTTATCGGCTACGTCATCAGTTCGCAGCTTTGCACCTCCACGAAATTG
GTGATTTTGATTATTTTTATTTTAGTGGGTTGCGTGGGATATGGCCTCAT
CGAGTACCGCTTTTGGCAGAAGCAAAAGAACTTGGAAGTCATGCTGAGTG
ACTGATTAGCTCTTCAAGGCTAATTCCATATCTTGCCATTTTCATTTCCG
ATTAATTTCAGCTATCCCCCTAACTTATTTTCGTTAAGGGAATAAGGATA
TAAGAAGTTATCTTATGTGATATTGCCAAATATTGTTAGGAAATTCGTTG
ATTTCGTTACTCAATAAAACCAAGTTTGTTTTAAAAAAAAAAAAAAAAAA
AAAAAAA

GH09628.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-RA 1959 CG2121-RA 74..1957 1..1884 9420 100 Plus
CG2121-RB 1933 CG2121-RB 153..1931 106..1884 8895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4285145..4285692 1047..500 2710 99.6 Minus
chr2R 21145070 chr2R 4284459..4284887 1475..1047 2145 100 Minus
chr2R 21145070 chr2R 4291422..4291819 501..104 1975 99.7 Minus
chr2R 21145070 chr2R 4283928..4284172 1882..1638 1225 100 Minus
chr2R 21145070 chr2R 4284234..4284397 1638..1475 820 100 Minus
chr2R 21145070 chr2R 4298628..4298734 107..1 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8397614..8398161 1047..500 2740 100 Minus
2R 25286936 2R 8396928..8397356 1475..1047 2145 100 Minus
2R 25286936 2R 8403891..8404288 501..104 1990 100 Minus
2R 25286936 2R 8396395..8396641 1884..1638 1235 100 Minus
2R 25286936 2R 8396703..8396866 1638..1475 820 100 Minus
2R 25286936 2R 8411096..8411202 107..1 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8398813..8399360 1047..500 2740 100 Minus
2R 25260384 2R 8398127..8398555 1475..1047 2145 100 Minus
2R 25260384 2R 8405090..8405487 501..104 1990 100 Minus
2R 25260384 2R 8397594..8397840 1884..1638 1235 100 Minus
2R 25260384 2R 8397902..8398065 1638..1475 820 100 Minus
2R 25260384 2R 8412295..8412401 107..1 535 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:43:35 has no hits.

GH09628.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:44:49 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4284234..4284396 1476..1638 100 <- Minus
chr2R 4283928..4284171 1639..1882 98 <- Minus
chr2R 4284459..4284886 1048..1475 100 <- Minus
chr2R 4285145..4285690 502..1047 99 <- Minus
chr2R 4291422..4291816 107..501 99 <- Minus
chr2R 4298629..4298734 1..106 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:44:52 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 6..1611 98..1705 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:50 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 6..1611 98..1705 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:37:24 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 6..1611 98..1705 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:42 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 6..1611 98..1705 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:13:31 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RB 6..1611 98..1705 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:50 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 24..1905 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:50 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 24..1905 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:37:24 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 29..1910 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:42 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 24..1905 1..1882 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:13:31 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
CG2121-RA 29..1910 1..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:49 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8396397..8396640 1639..1882 100 <- Minus
2R 8396703..8396865 1476..1638 100 <- Minus
2R 8396928..8397355 1048..1475 100 <- Minus
2R 8397614..8398159 502..1047 100 <- Minus
2R 8403891..8404285 107..501 100 <- Minus
2R 8411097..8411202 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:49 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8396397..8396640 1639..1882 100 <- Minus
2R 8396703..8396865 1476..1638 100 <- Minus
2R 8396928..8397355 1048..1475 100 <- Minus
2R 8397614..8398159 502..1047 100 <- Minus
2R 8403891..8404285 107..501 100 <- Minus
2R 8411097..8411202 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:49 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8396397..8396640 1639..1882 100 <- Minus
2R 8396703..8396865 1476..1638 100 <- Minus
2R 8396928..8397355 1048..1475 100 <- Minus
2R 8397614..8398159 502..1047 100 <- Minus
2R 8403891..8404285 107..501 100 <- Minus
2R 8411097..8411202 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:37:24 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4284208..4284370 1476..1638 100 <- Minus
arm_2R 4283902..4284145 1639..1882 100 <- Minus
arm_2R 4291396..4291790 107..501 100 <- Minus
arm_2R 4298602..4298707 1..106 100   Minus
arm_2R 4284433..4284860 1048..1475 100 <- Minus
arm_2R 4285119..4285664 502..1047 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:10 Download gff for GH09628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8397596..8397839 1639..1882 100 <- Minus
2R 8397902..8398064 1476..1638 100 <- Minus
2R 8398127..8398554 1048..1475 100 <- Minus
2R 8398813..8399358 502..1047 100 <- Minus
2R 8405090..8405484 107..501 100 <- Minus
2R 8412296..8412401 1..106 100   Minus

GH09628.hyp Sequence

Translation from 136 to 1704

> GH09628.hyp
MVYPSDTSDANNEELALEHSVAHGNVHGNGTGTGGSSPGTTTAPNGDNKV
NQRHYEPAERFIITKNVVVIGLAFMIHFTAFHGTSNLQSSVNADKALGTT
TLAVIYGSLILSNIFLPMTVIRWFGCRLTMALALFAYMPYIAAQFYPRFE
TLIPAALMVGFGGGPLWCSKCTYLSTVSEALTQVRGNKSRKDVNTVKFFG
LFFIFYQMAQVWGNLISSSVLTLSAPAAQSAANDSFELEVQRELERNRVA
ELCGARFCPGVGAEANPNLVPPAPEQIQLLNSIFLTCMAAAVVMMIFGVS
SLKRYGVKRGDTGDGMSGLKLLTVTINLLRKRRQILMLPITMFIGLEEAF
LAVDFTRSFVACGWGISRIGFAMICFGVANAVAAGIAGALVERIGRVTLA
ALCAVVNLCLLTYMYTWEAREGDYMSYCTFAAVWGICDGVWLVVVNAFYG
ILFPNHLIAAYSNFRLWESTGSVIGYVISSQLCTSTKLVILIIFILVGCV
GYGLIEYRFWQKQKNLEVMLSD*

GH09628.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-PB 536 CG2121-PB 15..536 1..522 2707 100 Plus
CG2121-PA 522 CG2121-PA 1..522 1..522 2707 100 Plus
CG4928-PB 538 CG4928-PB 36..486 57..517 983 41.3 Plus
CG4928-PA 538 CG4928-PA 36..486 57..517 983 41.3 Plus
CG4928-PC 495 CG4928-PC 36..481 57..512 971 41.3 Plus

GH09628.pep Sequence

Translation from 136 to 1704

> GH09628.pep
MVYPSDTSDANNEELALEHSVAHGNVHGNGTGTGGSSPGTTTAPNGDNKV
NQRHYEPAERFIITKNVVVIGLAFMIHFTAFHGTSNLQSSVNADKALGTT
TLAVIYGSLILSNIFLPMTVIRWFGCRLTMALALFAYMPYIAAQFYPRFE
TLIPAALMVGFGGGPLWCSKCTYLSTVSEALTQVRGNKSRKDVNTVKFFG
LFFIFYQMAQVWGNLISSSVLTLSAPAAQSAANDSFELEVQRELERNRVA
ELCGARFCPGVGAEANPNLVPPAPEQIQLLNSIFLTCMAAAVVMMIFGVS
SLKRYGVKRGDTGDGMSGLKLLTVTINLLRKRRQILMLPITMFIGLEEAF
LAVDFTRSFVACGWGISRIGFAMICFGVANAVAAGIAGALVERIGRVTLA
ALCAVVNLCLLTYMYTWEAREGDYMSYCTFAAVWGICDGVWLVVVNAFYG
ILFPNHLIAAYSNFRLWESTGSVIGYVISSQLCTSTKLVILIIFILVGCV
GYGLIEYRFWQKQKNLEVMLSD*

GH09628.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12591-PA 517 GF12591-PA 1..517 1..522 2461 89.6 Plus
Dana\GF21756-PA 543 GF21756-PA 16..476 37..506 931 40.3 Plus
Dana\GF23827-PA 334 GF23827-PA 36..324 223..506 427 33.8 Plus
Dana\GF24035-PA 148 GF24035-PA 2..145 75..220 264 41.1 Plus
Dana\GF21966-PA 741 GF21966-PA 287..735 110..514 222 21.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10646-PA 531 GG10646-PA 15..531 1..522 2640 96.4 Plus
Dere\GG19090-PA 538 GG19090-PA 16..475 37..506 944 40.3 Plus
Dere\GG12631-PA 740 GG12631-PA 290..734 107..514 216 22.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20815-PA 504 GH20815-PA 1..504 1..522 2286 85.4 Plus
Dgri\GH24749-PA 539 GH24749-PA 16..475 37..506 952 40.5 Plus
Dgri\GH12308-PA 765 GH12308-PA 582..759 339..514 184 23.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2121-PB 536 CG2121-PB 15..536 1..522 2707 100 Plus
CG2121-PA 522 CG2121-PA 1..522 1..522 2707 100 Plus
CG4928-PB 538 CG4928-PB 36..486 57..517 983 41.3 Plus
CG4928-PA 538 CG4928-PA 36..486 57..517 983 41.3 Plus
CG4928-PC 495 CG4928-PC 36..481 57..512 971 41.3 Plus
CG3078-PA 743 CG3078-PA 293..743 107..520 239 21.9 Plus
CG3078-PB 744 CG3078-PB 294..744 107..520 239 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20907-PA 498 GI20907-PA 3..498 11..522 2208 85.2 Plus
Dmoj\GI15358-PA 540 GI15358-PA 16..475 37..506 931 40 Plus
Dmoj\GI21450-PA 783 GI21450-PA 600..777 339..514 194 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10865-PA 518 GL10865-PA 1..518 1..522 2340 87.5 Plus
Dper\GL22408-PA 538 GL22408-PA 16..475 37..506 929 40 Plus
Dper\GL15593-PA 415 GL15593-PA 80..315 253..491 401 33.8 Plus
Dper\GL15706-PA 185 GL15706-PA 46..143 59..156 214 44.9 Plus
Dper\GL13388-PA 355 GL13388-PA 174..349 339..514 201 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15255-PA 560 GA15255-PA 42..560 1..522 2338 87.4 Plus
Dpse\GA18532-PA 538 GA18532-PA 16..475 37..506 929 40 Plus
Dpse\GA23457-PA 503 GA23457-PA 145..406 215..491 405 31.7 Plus
Dpse\GA23765-PA 271 GA23765-PA 46..205 59..220 335 43.2 Plus
Dpse\GA15911-PA 755 GA15911-PA 559..749 318..514 210 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20691-PA 535 GM20691-PA 15..535 1..522 2708 97.9 Plus
Dsec\GM13477-PA 538 GM13477-PA 16..475 37..506 948 40.5 Plus
Dsec\GM18898-PA 762 GM18898-PA 289..724 107..505 197 21.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10172-PA 222 GD10172-PA 2..222 302..522 1131 97.3 Plus
Dsim\GD17323-PA 538 GD17323-PA 16..475 37..506 948 40.5 Plus
Dsim\EG:30B8.6-PA 739 GD16378-PA 289..733 107..514 224 22.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20638-PA 515 GJ20638-PA 1..515 1..522 2334 86.8 Plus
Dvir\GJ18836-PA 540 GJ18836-PA 16..475 37..506 930 40.3 Plus
Dvir\GJ16471-PA 760 GJ16471-PA 577..754 339..514 195 24.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21817-PA 519 GK21817-PA 3..519 7..522 2246 82 Plus
Dwil\GK14653-PA 540 GK14653-PA 16..477 37..506 946 40 Plus
Dwil\GK21330-PA 252 GK21330-PA 2..232 283..512 393 32.9 Plus
Dwil\GK17435-PA 215 GK17435-PA 36..205 47..218 293 37.2 Plus
Dwil\GK25762-PA 779 GK25762-PA 598..773 339..514 202 23.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23054-PA 523 GE23054-PA 1..523 1..522 2688 96.7 Plus
Dyak\GE17635-PA 538 GE17635-PA 16..475 37..506 944 40.3 Plus
Dyak\GE16960-PA 741 GE16960-PA 291..735 107..514 222 22.5 Plus