Clone GH09647 Report

Search the DGRC for GH09647

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:96
Well:47
Vector:pOT2
Associated Gene/TranscriptCG8080-RA
Protein status:GH09647.pep: gold
Preliminary Size:1300
Sequenced Size:1729

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8080 2001-01-01 Release 2 assignment
CG8080 2002-05-30 Blastp of sequenced clone
CG8080 2008-04-29 Release 5.5 accounting
CG8080 2008-08-15 Release 5.9 accounting
CG8080 2008-12-18 5.12 accounting

Clone Sequence Records

GH09647.complete Sequence

1729 bp (1729 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118304

> GH09647.complete
CACCCAGAGAGCGGACGTGAAAATGATCATCGGGATCGGATAGCGGGATA
GTTAGTAGTGATCGTAACTTAGGATAGTGTGCTAAACACTAACCTCAACC
TATGTTTTGTGCTTTGTCGAGTGTAGAACGAACACGCAGTTATTTTGTTG
TTTGTGCAAAAGCATTCGAAAGTGGCCAACTGAAGAAAGAGCCATCGATT
CTTTGCATTTGGTTACTTTTATAGCGTAGTCTTTTTCCCAAACGATTTTC
TTAACGAATACGAAATAAACTGAACACAGTACCCTAAATGTGCGTTGTTC
GTCTTCGGTAGTGCCAAGCATGTTGAAGTCGAAGCAGTTGCTCCAACAGT
TTTCCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGG
GCCCTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCA
CCCGGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCA
CCGACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAG
CGGCGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTC
CAGCAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGG
CGGACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCC
GGACGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGT
GGGCTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCA
AGCACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGA
GATTTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAG
CAACGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCA
AGATGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCC
TACAAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAA
CGAGGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAAC
TGGTGCTGGACCACCAGGACGTGGTGAACAAGACCAAATGCTCCGGACTG
TGCGTCAGCACGGGCACGGGCTCAACATCCTGGCACACCAGCATCAATCG
CATCACAAGCCGAGATGTGGACGACCTGTTGCGTTCCCTGCCCGACGGCG
ATTCAAAGAACGTGATGATGCTACGACAAAATGCAGAGGAGATCGCCCAG
CGGTACAACCAAGGCCTGCTCTTCGCGCCAGACGACCCGCGCCTCTGCTA
TTCCATCCGGGAGCAAATCTGCGTGGGCGTGTGGCCTTCGCCAAAGACTT
TTAAGGAGCGCGATTTTGTGCAGACCGTGTTTGTCAAGTCGCATTGCATC
GATGCCAACCTGGTTATAGATGGCAGCATTTCGTTCCCCTTCAACGATGG
CGCCAAGGCTTTGCTAGAGGTTCACCCAGAAGATGCCCTTCTGACAATCG
CTTTAGACTGAATCCAGTGATGCGCCCCTAGTGCCTGGTCATCTCGCTCT
AGCATGTCTGAATTTTTGAAATTATTTAAGTAAGCATTTTGCAACTACTT
AGCAGTGTAAGCTCAAAAGTTATTTTGTTATTTTATAAAAGTATATTTAA
ACATCAAAAAAAAAAAAAAAAAAAAAAAA

GH09647.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-RA 1884 CG8080-RA 180..1884 1..1705 8525 100 Plus
CG13741-RA 2119 CG13741-RA 1659..2017 1..359 1795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4977652..4978056 1457..1053 2010 99.8 Minus
chr2R 21145070 chr2R 4980009..4980367 359..1 1795 100 Minus
chr2R 21145070 chr2R 4978984..4979232 606..358 1245 100 Minus
chr2R 21145070 chr2R 4977343..4977590 1705..1458 1240 100 Minus
chr2R 21145070 chr2R 4978379..4978625 848..602 1235 100 Minus
chr2R 21145070 chr2R 4978109..4978315 1057..851 1035 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9090083..9090487 1457..1053 2025 100 Minus
2R 25286936 2R 9092432..9092790 359..1 1795 100 Minus
2R 25286936 2R 9089773..9090021 1706..1458 1245 100 Minus
2R 25286936 2R 9091407..9091655 606..358 1245 100 Minus
2R 25286936 2R 9090810..9091056 848..602 1235 100 Minus
2R 25286936 2R 9090540..9090749 1057..848 1050 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9091282..9091686 1457..1053 2025 100 Minus
2R 25260384 2R 9093631..9093989 359..1 1795 100 Minus
2R 25260384 2R 9092606..9092854 606..358 1245 100 Minus
2R 25260384 2R 9090972..9091220 1706..1458 1245 100 Minus
2R 25260384 2R 9092009..9092255 848..602 1235 100 Minus
2R 25260384 2R 9091739..9091948 1057..848 1050 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:57:13 has no hits.

GH09647.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:58:19 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4978380..4978620 607..847 100 <- Minus
chr2R 4977343..4977590 1458..1705 100 <- Minus
chr2R 4977652..4978054 1055..1457 99 <- Minus
chr2R 4978112..4978318 848..1054 99 <- Minus
chr2R 4978984..4979230 360..606 100 <- Minus
chr2R 4980009..4980367 1..359 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:22 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 1..1242 320..1561 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:44 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 1..1242 320..1561 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:50:05 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 1..1242 320..1561 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:23 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 1..1242 320..1561 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:18 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 1..1242 320..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:55 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 180..1884 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:43 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 180..1884 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:05 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 104..1808 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:23 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 180..1884 1..1705 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:18 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 104..1808 1..1705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:19 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9089774..9090021 1458..1705 100 <- Minus
2R 9090083..9090485 1055..1457 100 <- Minus
2R 9090543..9090749 848..1054 100 <- Minus
2R 9090811..9091051 607..847 100 <- Minus
2R 9091407..9091653 360..606 100 <- Minus
2R 9092432..9092790 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:19 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9089774..9090021 1458..1705 100 <- Minus
2R 9090083..9090485 1055..1457 100 <- Minus
2R 9090543..9090749 848..1054 100 <- Minus
2R 9090811..9091051 607..847 100 <- Minus
2R 9091407..9091653 360..606 100 <- Minus
2R 9092432..9092790 1..359 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:19 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9089774..9090021 1458..1705 100 <- Minus
2R 9090083..9090485 1055..1457 100 <- Minus
2R 9090543..9090749 848..1054 100 <- Minus
2R 9090811..9091051 607..847 100 <- Minus
2R 9091407..9091653 360..606 100 <- Minus
2R 9092432..9092790 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:05 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4977279..4977526 1458..1705 100 <- Minus
arm_2R 4977588..4977990 1055..1457 100 <- Minus
arm_2R 4978048..4978254 848..1054 100 <- Minus
arm_2R 4978316..4978556 607..847 100 <- Minus
arm_2R 4978912..4979158 360..606 100 <- Minus
arm_2R 4979937..4980295 1..359 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:53 Download gff for GH09647.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9091742..9091948 848..1054 100 <- Minus
2R 9090973..9091220 1458..1705 100 <- Minus
2R 9091282..9091684 1055..1457 100 <- Minus
2R 9092010..9092250 607..847 100 <- Minus
2R 9092606..9092852 360..606 100 <- Minus
2R 9093631..9093989 1..359 100   Minus

GH09647.hyp Sequence

Translation from 319 to 1560

> GH09647.hyp
MLKSKQLLQQFSKEYAKYTPTNFKLKRALVVTKLSRYEFEQLRHPELSPD
QLQQKLRDRGTDVEMVLHLHKVHKDFERRVVQSFQDVGCEVKLSSRLEFR
SSLSKDVMSWADVIVPVGGDGTFLLSAGRASPLFALSQQKTPIVGFNSDP
LHSEGRLMLPKHYSDNPADAVSRIKSGDFKWMHRSRVRTTMLGSNGNIPE
PTDLFRHTEVKMEQVSTAPEMLDQDMAYKYKAKMKRVLPYLALNEVFIGE
HLSARVSHLQLVLDHQDVVNKTKCSGLCVSTGTGSTSWHTSINRITSRDV
DDLLRSLPDGDSKNVMMLRQNAEEIAQRYNQGLLFAPDDPRLCYSIREQI
CVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSISFPFNDGAKALLE
VHPEDALLTIALD*

GH09647.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-PA 413 CG8080-PA 1..413 1..413 2142 100 Plus
CG8080-PB 409 CG8080-PB 1..409 1..413 2107 99 Plus
CG8080-PC 408 CG8080-PC 1..408 1..413 2101 98.8 Plus
CG8080-PE 413 CG8080-PE 1..413 1..413 2078 97.1 Plus
CG8080-PD 409 CG8080-PD 1..409 1..413 2043 96.1 Plus

GH09647.pep Sequence

Translation from 319 to 1560

> GH09647.pep
MLKSKQLLQQFSKEYAKYTPTNFKLKRALVVTKLSRYEFEQLRHPELSPD
QLQQKLRDRGTDVEMVLHLHKVHKDFERRVVQSFQDVGCEVKLSSRLEFR
SSLSKDVMSWADVIVPVGGDGTFLLSAGRASPLFALSQQKTPIVGFNSDP
LHSEGRLMLPKHYSDNPADAVSRIKSGDFKWMHRSRVRTTMLGSNGNIPE
PTDLFRHTEVKMEQVSTAPEMLDQDMAYKYKAKMKRVLPYLALNEVFIGE
HLSARVSHLQLVLDHQDVVNKTKCSGLCVSTGTGSTSWHTSINRITSRDV
DDLLRSLPDGDSKNVMMLRQNAEEIAQRYNQGLLFAPDDPRLCYSIREQI
CVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSISFPFNDGAKALLE
VHPEDALLTIALD*

GH09647.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12712-PA 413 GF12712-PA 1..413 1..413 2006 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10586-PA 413 GG10586-PA 1..413 1..413 2189 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20283-PA 413 GH20283-PA 1..413 1..413 1945 86.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-PA 413 CG8080-PA 1..413 1..413 2142 100 Plus
CG8080-PB 409 CG8080-PB 1..409 1..413 2107 99 Plus
CG8080-PC 408 CG8080-PC 1..408 1..413 2101 98.8 Plus
CG8080-PE 413 CG8080-PE 1..413 1..413 2078 97.1 Plus
CG8080-PD 409 CG8080-PD 1..409 1..413 2043 96.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19454-PA 413 GI19454-PA 1..413 1..413 1883 83.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16853-PA 413 GL16853-PA 1..413 1..413 2033 90.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20809-PA 413 GA20809-PA 1..413 1..413 2033 90.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20634-PA 413 GM20634-PA 1..413 1..413 2186 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10107-PA 413 GD10107-PA 1..413 1..413 2190 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21205-PA 413 GJ21205-PA 1..413 1..413 1956 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22965-PA 413 GK22965-PA 1..413 1..413 2021 89.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22598-PA 413 GE22598-PA 1..413 1..413 2192 98.3 Plus