Clone GH09650 Report

Search the DGRC for GH09650

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:96
Well:50
Vector:pOT2
Associated Gene/TranscriptCG8134-RA
Protein status:GH09650.pep: gold
Preliminary Size:1300
Sequenced Size:1440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8134 2001-01-01 Release 2 assignment
CG8134 2002-03-19 Blastp of sequenced clone
CG8134 2003-01-01 Sim4 clustering to Release 3
CG8134 2008-04-29 Release 5.5 accounting
CG8134 2008-08-15 Release 5.9 accounting
CG8134 2008-12-18 5.12 accounting

Clone Sequence Records

GH09650.complete Sequence

1440 bp (1440 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094695

> GH09650.complete
ATAAAGTTTTCACAAATAATAATAAAAACACAATACAGGCGAAAATATAA
TGCACAAGTAGCGCGACCCGAAGTAACCTGCGCGGAGAACCACATGCTGT
AGCATGGATAAACTCCGCGGCGGCAGTCTGGGCGGCGGCGGATCCTCCAG
CGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCACCAACTGGAGCAGT
ATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAGGGCCTCCAGCAAG
ATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCTTTGCGCCCAGCGT
GGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTACAGCTTCGAGGAGT
CGGGCATACAGCAGTATGCGGCCATGTGCCACATTGGCTATGCCAAGTGC
GAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGGCCTATCTGCGGGC
AGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGGCGACTGCATCTGC
GCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCACTGCTATCACCGT
GCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGGCGGCCATTCTGCG
CGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACCAGCAGCTTTGCCT
CGCCCACCCATCAGATCCATGACCTGGAAATCAGCGCCGAAACGAGTGGC
CAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACGACGACATTGTGGA
CAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGTGAACTATTGCGGC
GCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTTGAACCTGCCTCCC
GCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGTACTACTACAACCT
GGCGCAGTTCGAGTCGCTCCCCTGTTCGGCGGACGACGGTGGATCCGCGG
AGCGTCCGGGAGCATTTGTGCCCGAACAGCAGCAGTATGCGCTGGCGGAG
ATTACGTGCGCCTGGGTGGAGCGTAAAATGTGCGATCTAAAGCACCTGCT
GCGCGACTTTGGAGCCGAATTTGGATCGCTGAGCGACATGGAAAGGCAGC
TGCTGGCGGTGATGCATGCAGAACTGGCCCGAAGCTACTAGATTTTAGAC
CTAAGATCGTACTGTACATTATTTACTACTGGATCATTACCACTGAATGA
GAATGACACATGCAACTATCGCTTAAGTGTAACCAAGTCTACCAACTAAC
CTTTGAACGTGCCTACACGCATAAAAATTGAATTAAATTAACAAACGAAT
GACCAGGTGAATGCAGCAATAAACAGAAGGTGCGAAGCGCAATGAAATGT
AATAGGATTTGTGATTTGTACAATAAATGAAGAGGAATGCGCATGATAGT
GCGAAGATAAAGATGACTAACAAAAAAAAAAAAAAAAAAA

GH09650.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8134-RA 1562 CG8134-RA 67..1490 1..1424 7120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15594410..15595548 283..1421 5680 99.9 Plus
chrX 22417052 chrX 15593942..15594223 1..282 1410 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15704593..15705734 283..1424 5710 100 Plus
X 23542271 X 15704125..15704406 1..282 1410 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15712691..15713832 283..1424 5710 100 Plus
X 23527363 X 15712223..15712504 1..282 1410 100 Plus
Blast to na_te.dros performed 2019-03-16 03:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1039..1079 1265..1305 115 75.6 Plus

GH09650.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:50:14 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15593942..15594223 1..282 100 -> Plus
chrX 15594410..15595548 283..1421 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:23 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1038 104..1141 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:07 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1038 104..1141 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:39 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1038 104..1141 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:28 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1038 104..1141 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:15:44 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1038 104..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:13 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1421 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:07 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1421 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:39 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1421 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:28 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1421 1..1421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:15:44 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
CG8134-RA 1..1421 1..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:14 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
X 15704125..15704406 1..282 100 -> Plus
X 15704593..15705731 283..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:14 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
X 15704125..15704406 1..282 100 -> Plus
X 15704593..15705731 283..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:14 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
X 15704125..15704406 1..282 100 -> Plus
X 15704593..15705731 283..1421 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:39 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15598158..15598439 1..282 100 -> Plus
arm_X 15598626..15599764 283..1421 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:13 Download gff for GH09650.complete
Subject Subject Range Query Range Percent Splice Strand
X 15712223..15712504 1..282 100 -> Plus
X 15712691..15713829 283..1421 100   Plus

GH09650.pep Sequence

Translation from 103 to 1140

> GH09650.pep
MDKLRGGSLGGGGSSSGAPSTAPGHEHHQLEQYQYPKNLIEQYLRASSKI
KKFERAGFFKRFAPSVVDVQADFQRLAYSFEESGIQQYAAMCHIGYAKCE
SYGGAPQRESEAYLRAARSFLAAHNESGRLHLRTRHSGFREGAVHCYHRA
ADRAVDGCVFKAAILRELKQLQRQLDSTSSFASPTHQIHDLEISAETSGQ
RGDFRSALQHYDDIVDNVYERRGARMYGELLRRVEVLRLLLLVHLNLPPA
RQSPAHIKLIEYYYNLAQFESLPCSADDGGSAERPGAFVPEQQQYALAEI
TCAWVERKMCDLKHLLRDFGAEFGSLSDMERQLLAVMHAELARSY*

GH09650.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21921-PA 357 GF21921-PA 1..357 1..345 1263 76.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17899-PA 345 GG17899-PA 1..345 1..345 1518 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17883-PA 339 GH17883-PA 1..339 1..345 1185 69 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8134-PB 345 CG8134-PB 1..345 1..345 1798 100 Plus
CG8134-PA 345 CG8134-PA 1..345 1..345 1798 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16455-PA 353 GI16455-PA 41..353 34..345 1105 73.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16480-PA 342 GL16480-PA 1..342 1..345 1327 79.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20842-PA 342 GA20842-PA 1..342 1..345 1341 79.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22566-PA 345 GM22566-PA 1..345 1..345 1786 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15856-PA 348 GJ15856-PA 1..348 1..345 1125 69.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10302-PA 352 GK10302-PA 1..352 1..345 1217 72 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17207-PA 345 GE17207-PA 1..345 1..345 1581 95.4 Plus

GH09650.hyp Sequence

Translation from 103 to 1140

> GH09650.hyp
MDKLRGGSLGGGGSSSGAPSTAPGHEHHQLEQYQYPKNLIEQYLRASSKI
KKFERAGFFKRFAPSVVDVQADFQRLAYSFEESGIQQYAAMCHIGYAKCE
SYGGAPQRESEAYLRAARSFLAAHNESGRLHLRTRHSGFREGAVHCYHRA
ADRAVDGCVFKAAILRELKQLQRQLDSTSSFASPTHQIHDLEISAETSGQ
RGDFRSALQHYDDIVDNVYERRGARMYGELLRRVEVLRLLLLVHLNLPPA
RQSPAHIKLIEYYYNLAQFESLPCSADDGGSAERPGAFVPEQQQYALAEI
TCAWVERKMCDLKHLLRDFGAEFGSLSDMERQLLAVMHAELARSY*

GH09650.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8134-PB 345 CG8134-PB 1..345 1..345 1798 100 Plus
CG8134-PA 345 CG8134-PA 1..345 1..345 1798 100 Plus