Clone GH09688 Report

Search the DGRC for GH09688

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:96
Well:88
Vector:pOT2
Associated Gene/TranscriptCAH1-RA
Protein status:GH09688.pep: gold
Preliminary Size:1439
Sequenced Size:1457

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7820 2001-01-01 Release 2 assignment
CG7820 2001-09-19 Blastp of sequenced clone
CG7820 2003-01-01 Sim4 clustering to Release 3
CAH1 2008-04-29 Release 5.5 accounting
CAH1 2008-08-15 Release 5.9 accounting
adat 2008-08-15 Release 5.9 accounting
CAH1 2008-12-18 5.12 accounting
adat 2008-12-18 5.12 accounting

Clone Sequence Records

GH09688.complete Sequence

1457 bp (1457 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058327

> GH09688.complete
GACTTACCATACAGTCGACGCTCCAATACGTTCCGCGCTACAACGATTCA
ACGATTGAACCATTCGGGATCCATTCCTCGATTTCCAGCGTCCATATATA
TATTTATATATATAAACAAACATCCACCCACCCATAAAGTCCCTATAAAG
CGGACCGCGCGATCCCCAGCGAAAGTCAGACGCGTGCCACCAACCGCGAG
TGCAACATCCCTCGAAACAACCAACTAAGATCCTACAGGATAAACAGCAG
AGCATAGTTAGTAGCCATCCAAAGCCAAAGTCCAAGATGAGCCACCACTG
GGGATACACCGAAGAGAACGGACCTGCCCACTGGGCCAAGGAGTACCCAC
AGGCGTCGGGACATCGTCAGTCGCCCGTGGATATCACACCCTCCAGCGCC
AAGAAGGGCAGCGAACTGAATGTAGCTCCGCTCAAGTGGAAGTATGTGCC
GGAGCACACCAAAAGCCTGGTCAATCCTGGCTATTGCTGGCGCGTGGATG
TGAACGGCGCCGACTCCGAGCTGACTGGAGGACCGCTGGGCGATCAGATC
TTTAAGCTGGAGCAGTTCCACTGCCACTGGGGCTGCACGGACTCCAAGGG
ATCGGAGCACACCGTCGACGGCGTGTCCTATTCCGGCGAGCTGCATTTGG
TTCACTGGAACACCACGAAGTACAAGTCGTTTGGCGAGGCGGCTGCCGCT
CCCGACGGCCTGGCCGTGCTGGGTGTGTTCCTTAAGGCTGGCAATCACCA
TGCCGAACTGGACAAGGTGACCAGCCTGCTGCAGTTCGTGCTGCACAAGG
GCGATCGCGTCACCCTCCCCCAGGGCTGTGATCCCGGCCAGCTGCTGCCC
GATGTGCACACCTATTGGACCTATGAGGGTTCCCTGACCACTCCACCGTG
CTCGGAGTCGGTCATCTGGATCGTGTTCAAGACGCCCATCGAAGTGTCCG
ACGACCAGCTGAACGCCATGCGCAATCTCAATGCCTACGACGTGAAGGAG
GAGTGCCCCTGCAACGAGTTCAACGGCAAGGTCATCAACAACTTCCGTCC
TCCGCTGCCGCTGGGCAAGCGTGAGCTGCGCGAGATCGGGGGCCACTAAG
TCGGTGGATGTTGGACAACTAAGTCCTTGGATAGTCAACGGATTCGAGTG
TCGTATGATTAGCTTTTCGCACCCACACATCACATCCGTACGCCACGAGC
TGGACCGGCACATCTCCATTGTTCAATTCTCGTCTTTAGTTCGTACGCCC
AGCAAGAGCATACCTCCTATATGTGCATCCGTATCCGTATTCGCATCAGT
GGATGCTTAGCTGTAACCTTAATTGTACATGTACGCCTGTTCGTTTGTTT
GTCTGTTAAACGTTTGCAAAATGACAATTAGATTTATGTTATTATGGTAT
TATAAACTAAATATAACACGCTTAGATGTTGCATATGATAAAAAAAAAAA
AAAAAAA

GH09688.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1458 CAH1-RA 17..1457 1..1441 7205 100 Plus
CAH1.a 1191 CAH1.a 69..1190 320..1441 5610 100 Plus
adat-RA 3020 adat-RA 1439..2401 1441..479 4815 100 Minus
adat-RA 3020 adat-RA 2415..2572 477..320 790 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13807739..13808705 473..1439 4805 99.8 Plus
chr2L 23010047 chr2L 13802353..13802673 1..321 1560 99.1 Plus
chr2L 23010047 chr2L 13807519..13807679 320..480 790 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809996 479..1441 4815 100 Plus
2L 23513712 2L 13803643..13803963 1..321 1605 100 Plus
2L 23513712 2L 13808808..13808968 320..480 805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809996 479..1441 4815 100 Plus
2L 23513712 2L 13803643..13803963 1..321 1605 100 Plus
2L 23513712 2L 13808808..13808968 320..480 805 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:51:12 has no hits.

GH09688.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:49 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13802353..13802672 1..320 91 -> Plus
chr2L 13807520..13807678 321..479 99 -> Plus
chr2L 13807746..13808705 480..1439 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:25 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 287..1099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:40 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 287..1099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:15 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 287..1099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:28 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 287..1099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:18 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 287..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:59:16 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 17..1455 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:40 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 16..1454 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:15 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 18..1456 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:29 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 17..1455 1..1439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:18 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 18..1456 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:49 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13803643..13803962 1..320 100 -> Plus
2L 13808809..13808967 321..479 100 -> Plus
2L 13809035..13809994 480..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:49 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13803643..13803962 1..320 100 -> Plus
2L 13808809..13808967 321..479 100 -> Plus
2L 13809035..13809994 480..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:49 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13803643..13803962 1..320 100 -> Plus
2L 13808809..13808967 321..479 100 -> Plus
2L 13809035..13809994 480..1439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:15 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13809035..13809994 480..1439 100   Plus
arm_2L 13803643..13803962 1..320 100 -> Plus
arm_2L 13808809..13808967 321..479 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:56 Download gff for GH09688.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13803643..13803962 1..320 100 -> Plus
2L 13808809..13808967 321..479 100 -> Plus
2L 13809035..13809994 480..1439 100   Plus

GH09688.hyp Sequence

Translation from 286 to 1098

> GH09688.hyp
MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLK
WKYVPEHTKSLVNPGYCWRVDVNGADSELTGGPLGDQIFKLEQFHCHWGC
TDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPDGLAVLGVFLK
AGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSL
TTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVI
NNFRPPLPLGKRELREIGGH*

GH09688.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-PA 270 CG7820-PA 1..270 1..270 1503 100 Plus
CAH2-PA 335 CG6906-PA 24..282 1..264 387 34.9 Plus
CG6074-PA 311 CG6074-PA 22..289 2..270 341 32.7 Plus
CG11284-PE 250 CG11284-PE 4..227 28..254 317 34.5 Plus
CG11284-PD 250 CG11284-PD 4..227 28..254 317 34.5 Plus

GH09688.pep Sequence

Translation from 286 to 1098

> GH09688.pep
MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLK
WKYVPEHTKSLVNPGYCWRVDVNGADSELTGGPLGDQIFKLEQFHCHWGC
TDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPDGLAVLGVFLK
AGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSL
TTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVI
NNFRPPLPLGKRELREIGGH*

GH09688.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14257-PA 270 GF14257-PA 1..270 1..270 1406 96.7 Plus
Dana\GF24807-PA 329 GF24807-PA 32..284 5..262 394 36.1 Plus
Dana\GF24805-PA 336 GF24805-PA 24..281 2..264 352 33.6 Plus
Dana\GF22952-PA 311 GF22952-PA 23..289 3..270 331 30.8 Plus
Dana\GF19158-PA 363 GF19158-PA 117..340 28..254 322 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23881-PA 270 GG23881-PA 1..270 1..270 1418 97 Plus
Dere\GG15564-PA 335 GG15564-PA 25..282 2..264 393 35.1 Plus
Dere\GG12140-PA 311 GG12140-PA 22..289 2..270 345 31.8 Plus
Dere\GG18267-PA 250 GG18267-PA 4..227 28..254 331 34.9 Plus
Dere\GG18326-PA 327 GG18326-PA 30..294 5..265 315 30.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11114-PA 270 GH11114-PA 1..270 1..270 1355 92.2 Plus
Dgri\GH18947-PA 310 GH18947-PA 21..288 2..270 339 32.4 Plus
Dgri\GH16154-PA 337 GH16154-PA 20..273 2..262 336 32.6 Plus
Dgri\GH24456-PA 250 GH24456-PA 4..227 28..254 320 34.5 Plus
Dgri\GH11804-PA 327 GH11804-PA 30..294 5..265 308 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-PA 270 CG7820-PA 1..270 1..270 1503 100 Plus
CAH2-PA 335 CG6906-PA 24..282 1..264 387 34.9 Plus
caix-PA 311 CG6074-PA 22..289 2..270 341 32.7 Plus
CG11284-PE 250 CG11284-PE 4..227 28..254 317 34.5 Plus
CG11284-PD 250 CG11284-PD 4..227 28..254 317 34.5 Plus
CG11284-PC 250 CG11284-PC 4..227 28..254 317 34.5 Plus
CG11284-PB 250 CG11284-PB 4..227 28..254 317 34.5 Plus
CG11284-PA 250 CG11284-PA 4..227 28..254 317 34.5 Plus
CG32698-PD 327 CG32698-PD 30..294 5..265 310 30.8 Plus
CG32698-PB 327 CG32698-PB 30..294 5..265 310 30.8 Plus
CG32698-PC 327 CG32698-PC 30..294 5..265 310 30.8 Plus
CG32698-PA 327 CG32698-PA 30..294 5..265 310 30.8 Plus
CAH2-PB 253 CG6906-PB 1..200 61..264 300 36.3 Plus
CG5379-PB 303 CG5379-PB 33..274 13..255 286 33.9 Plus
CG5379-PA 303 CG5379-PA 33..274 13..255 286 33.9 Plus
CG10899-PA 279 CG10899-PA 18..239 4..220 285 34.3 Plus
CG3669-PB 298 CG3669-PB 29..281 4..262 279 32.3 Plus
CG18673-PC 302 CG18673-PC 58..273 24..231 277 33.6 Plus
CG10899-PC 200 CG10899-PC 7..160 72..220 276 39.9 Plus
CG1402-PC 333 CG1402-PC 39..296 5..265 270 31 Plus
CG1402-PB 333 CG1402-PB 39..296 5..265 270 31 Plus
CG3940-PC 304 CG3940-PC 19..249 2..235 267 33.6 Plus
CG3940-PB 304 CG3940-PB 19..249 2..235 267 33.6 Plus
CG3940-PA 304 CG3940-PA 19..249 2..235 267 33.6 Plus
CG18672-PB 284 CG18672-PB 40..275 23..262 223 28.1 Plus
CG18672-PD 281 CG18672-PD 40..272 23..262 222 28 Plus
CG18672-PC 286 CG18672-PC 40..277 23..262 220 27.6 Plus
CG12309-PA 527 CG12309-PA 83..313 5..231 172 25.3 Plus
CG9235-PA 332 CG9235-PA 82..321 5..262 165 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18237-PA 270 GI18237-PA 1..270 1..270 1391 95.2 Plus
Dmoj\GI12426-PA 330 GI12426-PA 21..275 1..262 336 32.5 Plus
Dmoj\GI23275-PA 310 GI23275-PA 22..288 3..270 331 31.1 Plus
Dmoj\GI15514-PA 250 GI15514-PA 4..227 28..254 327 35.3 Plus
Dmoj\GI15986-PA 325 GI15986-PA 30..294 5..265 317 30.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21230-PA 270 GL21230-PA 1..270 1..270 1391 94.8 Plus
Dper\GL25159-PA 335 GL25159-PA 23..282 1..264 351 33.3 Plus
Dper\GL23614-PA 305 GL23614-PA 22..283 2..270 336 31.8 Plus
Dper\GL12953-PA 250 GL12953-PA 4..227 28..254 330 34.5 Plus
Dper\GL14732-PA 331 GL14732-PA 37..294 5..265 276 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20608-PA 270 GA20608-PA 1..270 1..270 1391 94.8 Plus
Dpse\GA19339-PA 311 GA19339-PA 22..289 2..270 349 31.7 Plus
Dpse\GA19947-PA 335 GA19947-PA 23..282 1..264 347 33 Plus
Dpse\GA10890-PA 250 GA10890-PA 4..227 28..254 335 34.9 Plus
Dpse\GA22357-PA 327 GA22357-PA 30..294 5..265 311 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15222-PA 270 GM15222-PA 1..270 1..270 1436 98.9 Plus
Dsec\GM25332-PA 335 GM25332-PA 24..282 1..264 395 34.9 Plus
Dsec\GM10133-PA 311 GM10133-PA 22..289 2..270 345 31.8 Plus
Dsec\GM21755-PA 250 GM21755-PA 4..227 28..254 324 34.5 Plus
Dsec\GM11388-PA 296 GM11388-PA 69..248 79..265 286 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\CAH1-PA 270 GD23924-PA 1..270 1..270 1436 98.9 Plus
Dsim\GD14364-PA 335 GD14364-PA 24..282 1..264 398 34.9 Plus
Dsim\GD18095-PA 311 GD18095-PA 22..289 2..270 347 31.8 Plus
Dsim\GD16911-PA 250 GD16911-PA 4..227 28..254 324 34.5 Plus
Dsim\GD16965-PA 310 GD16965-PA 20..277 12..265 307 30.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18144-PA 270 GJ18144-PA 1..270 1..270 1388 94.8 Plus
Dvir\GJ12322-PA 331 GJ12322-PA 19..273 1..262 371 35.8 Plus
Dvir\GJ24133-PA 310 GJ24133-PA 21..288 2..270 343 31.8 Plus
Dvir\GJ19272-PA 250 GJ19272-PA 4..227 28..254 328 34.9 Plus
Dvir\GJ18715-PA 325 GJ18715-PA 30..294 5..265 311 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24229-PA 270 GK24229-PA 1..270 1..270 1395 95.2 Plus
Dwil\GK13282-PA 300 GK13282-PA 10..269 1..264 353 32.7 Plus
Dwil\GK12035-PA 312 GK12035-PA 22..290 1..270 339 30.9 Plus
Dwil\GK10304-PA 250 GK10304-PA 4..227 28..254 324 34.5 Plus
Dwil\GK25359-PA 327 GK25359-PA 30..294 5..265 311 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18682-PA 270 GE18682-PA 1..270 1..270 1424 97.4 Plus
Dyak\GE21890-PA 335 GE21890-PA 24..282 1..264 379 34.2 Plus
Dyak\GE10587-PA 311 GE10587-PA 22..289 2..270 343 31.4 Plus
Dyak\GE15797-PA 250 GE15797-PA 4..227 28..254 326 34.5 Plus
Dyak\GE17810-PA 327 GE17810-PA 30..294 5..265 315 30.5 Plus