Clone GH09755 Report

Search the DGRC for GH09755

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:97
Well:55
Vector:pOT2
Associated Gene/Transcriptpcs-RB
Protein status:GH09755.pep: gold
Preliminary Size:1921
Sequenced Size:2205

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7761 2001-01-01 Release 2 assignment
CG7761 2001-09-19 Blastp of sequenced clone
CG7761 2003-01-01 Sim4 clustering to Release 3
pcs 2008-04-29 Release 5.5 accounting
pcs 2008-08-15 Release 5.9 accounting
pcs 2008-12-18 5.12 accounting

Clone Sequence Records

GH09755.complete Sequence

2205 bp (2205 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058328

> GH09755.complete
CTGGACGCGTCTTTAATTTTTAGGATAGTTTAGCCTTTATAAGCGAGTTA
ATTAAATATCTTAGATGCCCCGAGCGAAGGAGAAGGTGAAAAGCCGCGTG
CCCTGTCCACTTGTACCGTTCGTCTTGTTCACACTTAATGTAATCGCCAT
GTGTCCCTTTCCCTTTTCGCTTTTAACTTCGTTGTGAAACATAAGACGCA
AAATGAAATATTTGTTTTAATACTGCTGCTGTACCCGCATAGCAAATTGC
CAGTTAAAATTGCCAACACCAATTTACATAATATTATAGAAAAAAACACA
GAAAAAAAAAAGAAAAACAAAACACACAAGCAAATTGATAGTCGTGGGAT
GTGTCTGTGTAGCAACGAGATCAAATAGTGAAATGCAAAAGCGTTTTTCA
ATTGAAAAGCGGGCTGCAGAAAAGTGAAAATTAACGCGTTTAGCGATATA
TTTGCATTTGGAACGAATTCAGTGAAAACCAGTAAAAATGTCGAGTGCAG
AAGACGGCGAGCTGGATCCCCAAATTCAGATTGAACTGGAGAATCTCAAT
AGTGCAACCGATGAGATTAATAAGCTAGAAATCGAGCTAGAGGAGGCTAA
TTCCACCTTTCGCATCCTGTTAAATGAATCTACACGCCGCCTTAAAGTTT
CCTCCAAAAAGTTGGGCAACTGCATAGAGAAGGCTAGACCCTACTACGAG
GCATTGGACAAGGCACGCGAGGCACAAATCGAATGCCAAAAAGCAGCGGT
TAAGTTCCAGCGAGCTAATGAAATCCATGCCGCAGCCAAGGAGACGGTGG
CGCTTGCTGAGCAGCGTTTTATGTCCAACTCGCACGAATGGCAGTTCGAC
AATGCCTGGCAGGAGATGCTTAACCATGCTACCCAGAAGGTGATGGATGC
CGAAACGCAGAAAGCCGACTGTCATGCTGAGCACCAGAGGCTCACCAAAC
TTTTTAACGCCGCCGAGCAAAAGCTGCAACAGCTTGAGGATCGTTTTCGT
CGTAGCATCAACAAGTCACGCCCGTACTTCGAAGAGAAGCAGGTGTGTCA
GGATCAGCTGCAGACACAAAAAAACCGCATTCAGGAGCTGCAGCAGCAGG
TGGCCGGTGCTAAGAGCACCTACTCCACGGCCTTACGCAATCTGGAGAGG
ATCAGTGAGGATATACATAGGCAGAGGGGAGATTTTCCCACTCCACCAGG
ACCCCGCGAGCCGGGTGTGGGAGCAGAGTTAAACTCTCCGACTTCCAGTG
CCTTGCCATCACTGCCCGATTTCCAGCTGGAGCTTGAGAAGTGCGACTAT
CCCTCCATAGCGGGCAGCCAGATGTCTTTGGGCGCAAAAACTCCCCAAGC
AGCTGCCGAAACTGAAGATGAGGAAGATGCCTGCGACTACGATGAAACGG
GAGCCGGGGAGCTCAGAGGTGTAGTGGATGAACGCGATTTGGAGGCGCTG
CGACAGAAGGTCAAGATCCTGGCGGTGCGTCCCATCGAGGGCGGAGATGG
ACAGCAGCAGAACGATGTGTGGGAGCATGAACTGAAGGCCACGGTGGACA
AGCTGGATCACTTGATGATGCTGAAAGAAACAGCCAAAAGGCAGCAAACG
AACCGCTTGAAGTCCACCGAACAGCGACCCGATTCATTGGGCGCCGAGGC
CTTGAAACGCCACTGCGATGTGGTCGAGGTGAAGGTCACCTCTTGCGCCA
CCACAGCCAGCTTGCCAGTCACACCCCATCACCAGCTGAATCACCTTGCA
CCGCCCACGCCCATTAAGAAGCTGCAACAGCAACTGGCGCCCTTGCCCTC
CGTAAACGTTTCCATGCGGGAGTTGCCCCTGTTGGCCAGGTTGTCCAACG
AGCTCCTGGATCGCAGCAGTGCTGCTTTCGGCGGAGTGCGCAAGACGCTG
CGTAGGCGCTCTCTGGAATAGTGAGCAACTAGGGGGCCAGAGGAGACTTC
TTCAGCCAGCCCCATATCAGATTTGTTTATATTAAATGAATAATGAAAAG
TAATTGTAAAACGTTGAACGCCGCATTTAAATGTGCACCACTATCGATAA
GTCTCTACACCCACAGGATATAAACACCAACTATTTTCGTATAAATGTTG
ATTACATTCTAATCTATTGTCTCCGTATATGTTTCTCACTGTTAATACTT
TAACTATGTAAATGTTTTGTGATTCGAGAGAGCTAAAAAAAAAAAAAAAA
AAAAA

GH09755.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
pcs.c 2697 pcs.c 84..2277 1..2194 10955 99.9 Plus
pcs-RB 2296 pcs-RB 84..2277 1..2194 10955 99.9 Plus
pcs.d 2408 pcs.d 101..2102 193..2194 9995 99.9 Plus
pcs.d 2408 pcs.d 19..103 1..85 425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10877191..10878605 770..2184 7075 100 Plus
chr2R 21145070 chr2R 10868568..10869095 1..529 2595 99.8 Plus
chr2R 21145070 chr2R 10876949..10877128 591..770 900 100 Plus
chr2R 21145070 chr2R 10876817..10876885 525..593 345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14989922..14991346 770..2194 7110 99.9 Plus
2R 25286936 2R 14981295..14981823 1..529 2645 100 Plus
2R 25286936 2R 14989680..14989859 591..770 900 100 Plus
2R 25286936 2R 14989548..14989616 525..593 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14991121..14992545 770..2194 7110 99.9 Plus
2R 25260384 2R 14982494..14983022 1..529 2645 100 Plus
2R 25260384 2R 14990879..14991058 591..770 900 100 Plus
2R 25260384 2R 14990747..14990815 525..593 345 100 Plus
Blast to na_te.dros performed 2019-03-15 17:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6131..6227 245..342 126 64 Plus

GH09755.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:55:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10868568..10869095 1..529 99 -> Plus
chr2R 10876822..10876888 530..595 97 -> Plus
chr2R 10876954..10877128 596..770 100 -> Plus
chr2R 10877192..10878605 771..2184 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:07:39 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RA 1..1431 488..1921 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:07 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RB 1..1434 488..1921 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:50:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RB 1..1434 488..1921 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:24 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RA 1..1431 488..1921 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:18 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RB 1..1434 488..1921 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:39 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RA 1..2181 1..2184 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:06 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RB 19..2202 1..2184 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:50:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RB 33..2216 1..2184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:25 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RA 1..2181 1..2184 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:18 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
pcs-RB 33..2216 1..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14981295..14981823 1..529 100 -> Plus
2R 14989553..14989619 530..595 97 -> Plus
2R 14989685..14989859 596..770 100 -> Plus
2R 14989923..14991336 771..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14981295..14981823 1..529 100 -> Plus
2R 14989553..14989619 530..595 97 -> Plus
2R 14989685..14989859 596..770 100 -> Plus
2R 14989923..14991336 771..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14981295..14981823 1..529 100 -> Plus
2R 14989553..14989619 530..595 97 -> Plus
2R 14989685..14989859 596..770 100 -> Plus
2R 14989923..14991336 771..2184 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:50:19 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10868800..10869328 1..529 100 -> Plus
arm_2R 10877058..10877124 530..595 97 -> Plus
arm_2R 10877190..10877364 596..770 100 -> Plus
arm_2R 10877428..10878841 771..2184 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:18 Download gff for GH09755.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14990884..14991058 596..770 100 -> Plus
2R 14982494..14983022 1..529 100 -> Plus
2R 14990752..14990818 530..595 97 -> Plus
2R 14991122..14992535 771..2184 100   Plus

GH09755.pep Sequence

Translation from 487 to 1920

> GH09755.pep
MSSAEDGELDPQIQIELENLNSATDEINKLEIELEEANSTFRILLNESTR
RLKVSSKKLGNCIEKARPYYEALDKAREAQIECQKAAVKFQRANEIHAAA
KETVALAEQRFMSNSHEWQFDNAWQEMLNHATQKVMDAETQKADCHAEHQ
RLTKLFNAAEQKLQQLEDRFRRSINKSRPYFEEKQVCQDQLQTQKNRIQE
LQQQVAGAKSTYSTALRNLERISEDIHRQRGDFPTPPGPREPGVGAELNS
PTSSALPSLPDFQLELEKCDYPSIAGSQMSLGAKTPQAAAETEDEEDACD
YDETGAGELRGVVDERDLEALRQKVKILAVRPIEGGDGQQQNDVWEHELK
ATVDKLDHLMMLKETAKRQQTNRLKSTEQRPDSLGAEALKRHCDVVEVKV
TSCATTASLPVTPHHQLNHLAPPTPIKKLQQQLAPLPSVNVSMRELPLLA
RLSNELLDRSSAAFGGVRKTLRRRSLE*

GH09755.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12309-PA 474 GF12309-PA 1..474 1..477 2286 91.4 Plus
Dana\GF21571-PA 187 GF21571-PA 1..187 1..190 334 40 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20495-PA 477 GG20495-PA 1..477 1..477 2519 99 Plus
Dere\GG19446-PA 175 GG19446-PA 1..175 1..178 309 40.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21107-PA 526 GH21107-PA 1..526 1..477 1943 76 Plus
Dgri\GH12516-PA 698 GH12516-PA 1..252 1..230 419 39.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
pcs-PB 477 CG7761-PB 1..477 1..477 2437 100 Plus
CG14408-PA 659 CG14408-PA 1..227 1..230 465 43.5 Plus
CG14408-PG 630 CG14408-PG 1..252 1..230 429 39.2 Plus
CG14408-PE 684 CG14408-PE 1..252 1..230 429 39.2 Plus
CG14408-PH 684 CG14408-PH 1..252 1..230 429 39.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18709-PA 499 GI18709-PA 1..499 1..477 2024 82.6 Plus
Dmoj\GI14868-PA 678 GI14868-PA 1..252 1..230 412 39.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10610-PA 471 GL10610-PA 1..471 1..477 2251 90 Plus
Dper\GL20153-PA 202 GL20153-PA 1..163 13..178 270 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20569-PA 471 GA20569-PA 1..471 1..477 2254 90.2 Plus
Dpse\GA26629-PA 691 GA26629-PA 1..252 1..230 409 38.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21587-PA 477 GM21587-PA 1..477 1..477 2520 99.2 Plus
Dsec\GM12036-PA 175 GM12036-PA 1..175 1..178 309 40.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11094-PA 477 GD11094-PA 1..477 1..477 2527 99.4 Plus
Dsim\GD15836-PA 190 GD15836-PA 1..72 1..72 198 51.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21729-PA 497 GJ21729-PA 1..497 1..477 2053 84.1 Plus
Dvir\GJ19530-PA 236 GJ19530-PA 1..175 1..178 308 41 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19698-PA 505 GK19698-PA 6..505 3..477 2052 82.8 Plus
Dwil\GK25419-PA 636 GK25419-PA 1..252 1..230 420 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13628-PA 477 GE13628-PA 1..477 1..477 2528 99.4 Plus
Dyak\GE16099-PA 175 GE16099-PA 1..175 1..178 305 39.9 Plus

GH09755.hyp Sequence

Translation from 820 to 1920

> GH09755.hyp
MSNSHEWQFDNAWQEMLNHATQKVMDAETQKADCHAEHQRLTKLFNAAEQ
KLQQLEDRFRRSINKSRPYFEEKQVCQDQLQTQKNRIQELQQQVAGAKST
YSTALRNLERISEDIHRQRGDFPTPPGPREPGVGAELNSPTSSALPSLPD
FQLELEKCDYPSIAGSQMSLGAKTPQAAAETEDEEDACDYDETGAGELRG
VVDERDLEALRQKVKILAVRPIEGGDGQQQNDVWEHELKATVDKLDHLMM
LKETAKRQQTNRLKSTEQRPDSLGAEALKRHCDVVEVKVTSCATTASLPV
TPHHQLNHLAPPTPIKKLQQQLAPLPSVNVSMRELPLLARLSNELLDRSS
AAFGGVRKTLRRRSLE*

GH09755.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
pcs-PB 477 CG7761-PB 112..477 1..366 1891 100 Plus
CG14408-PA 659 CG14408-PA 118..227 10..119 212 39.1 Plus
CG14408-PG 630 CG14408-PG 118..252 10..119 176 31.9 Plus
CG14408-PE 684 CG14408-PE 118..252 10..119 176 31.9 Plus
CG14408-PH 684 CG14408-PH 118..252 10..119 176 31.9 Plus