BDGP Sequence Production Resources |
Search the DGRC for GH09820
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 98 |
Well: | 20 |
Vector: | pOT2 |
Associated Gene/Transcript | spin-RA |
Protein status: | GH09820.pep: gold |
Sequenced Size: | 2976 |
2976 bp assembled on 2013-05-10
GenBank Submission: BT150099.1
> GH09820.complete CGTCGCGGAAGAAACAAGAAAGAAAAACAGCGAGAAGCACTGCAAATGCA TTGGCTGCATTTAAAGAACAACCGCGATTAGAGGAAGTGTCTCAGTACAC AGTCGAATTAGCCATACAAATTGGCAAAAGTGTTATAAAAGAGAAGCGCG GTGGTGTGCCAACAGCCCAAGAGCAAATTCTTTTGCATTCGCTTTTGAAC CGCTTTCATCGCGAGTTCCCGTTTCTCTGTGTGCGTGAGCAAAGAGCGTG TGCAAATAACTTTTTGCCGCGTTGTCCGCCTGCTGCGAATTTCCAACCGA AAGAGGACAGCGAGAGCGCGAGAAGAGAAGAGAGGATCGAGTGATCGGGT GAATGTCGCTGAAACACCAGAAGCAATCCTACCAACCGCTCCCAACGGCG GCCGCCATGGACAATCCGGCGATGATCCAGAGCAGCGGTAGCAGTGGGAG CAGCTCCTCTGAGGAGGGCGGGAGTCGTGAGGATGTGGCCAATCTATCGC CGCTCGGACTGCCTACGACCTACTCGTCACAGCAATTGATGCCCTCGGAT ACGGACAGCATGGAGGAGGAGCGGCACCGACTGCGTCCCCACCACCATCA CCACCACCCACTGGGCGAGCACCACCACATCCCGGGCATACCACCATCCG CCGTCGTGCCATCGCGTCTCTCCAGCGTGGGCAGATCGCAGTGGTTCACC GTTACCGTGCTATGCTTCGTCAACCTCATCAACTACATGGATCGCTTTAC GATCGCAGGAGTTCTCACAGATGTCCGAAATGATTTCGATATTGGCAATG ATAGTGCCGGACTTCTCCAGACGGTCTTCGTTATCTCGTACATGGTATGC GCCCCCATCTTCGGCTATCTGGGCGATCGTTACTCCCGCCCCTGGATAAT GGCGGTGGGCGTGGGTCTGTGGAGCACCACCACCCTACTGGGGTCGTTCA TGAAGCAGTTTGGATGGTTCATCGCCTTCAGAGCGCTGGTCGGGATCGGC GAGGCATCGTACAGTACCATCGCACCGACGATTATCTCGGATCTGTTCGT GCACGACATGCGCTCCAAGATGCTGGCACTGTTCTACTTTGCCATACCCG TGGGATCCGGTCTGGGATACATTGTGGGATCCAAGACAGCGCACCTGGCC AACGATTGGCGCTGGGCTCTGAGGGTCACGCCCATTCTGGGCATTGTGGC AGTTTTCCTCATTTTGCTGATCAAGGATCCGGTGCGGGGTCACAGCGAGG GATCGCACAATTTGGAGGCCACTACCTACAAGCAGGACATCAAGGCGTTG GTCAGGAACCGTTCCTTCATGCTCTCCACGGCTGGATTCACGTGCGTTGC CTTCGTGGCCGGAGCACTGGCCTGGTGGGGACCTTCCTTCATCTATCTAG GCATGAAGATGCAGCCCGGCAACGAGAACATTGTCCAGGACGATGTTGCG TTCAACTTCGGAGTCATCACCATGTTGGCGGGCCTGCTGGGCGTGCCGCT GGGCTCGTTCCTGTCCCAGTACCTGGTTAAGCGTTATCCCACGGCGGATC CGGTAATCTGCGCCTTTGGGCTGCTCGTGAGTGCGCCGCTGCTGACGGGC GCCTGTCTCTTGGTCAACAGCAATTCGGTTGGCACCTATGCACTCATATT TTTCGGGCAGTTAGCTTTAAATTTGAATTGGGCAATTGTTGCGGACATAC TGCTGTATGTGGTGGTTCCCACGCGACGTTCAACAGCCGAGGCCTTCCAA ATCCTCATCTCACACGCACTCGGTGATGCCGGCAGTCCGTATTTGGTTGG AGCAATCTCCGAGGCCATCATGAAACACCTGCACAAGAACCCCAGCGACT CTGGACTGACCACCGAGCTGCGAAGCATGTCCCAAGTGGCAGGTTCCGCG ATCAGTAATGCCACCCAGGTGATCGCGGAAGCCACCACCAGTTTGATGGA AACAGCACGCTCGTCAGCCTCTCAGGAATACTCTGATGTGGAGCAATTCG AGGGACTGCAATATGCGCTCTTCTCCACCAGTTTTGTGGAGGTGCTGGGC GGCATTTTCTTCATATTCACCGCCTGCTTTATCATCAAAGACAAGTACAA TGCCACACGAGGACTGCAAGATGCCACGGCTCAGCAACAGCAGCGGGATG AGCGCGGTCAGATTGCCTAATACCAGCCGATTCTGGAGGTTATGCTGCGC ACTCAGAGCTCCGATGGCATGCCGGGTGAACTGATACTGACTGAAAACCA TCTTTAATTTAATTTACGGTCACTCGCACCACGCACATCCCGCATCGGAT CGTACTGGAAGCTTACGGGGACGGGGACACCTTGCTCAGTTGGGCGGACA AGTTCCCGATGTTCATGTTCCTATTGGAAGGGATCGGAGGAAGGAGGAAA ATGGGGGAAAGGACCACCATGCCAACACGTTCAAGCACGCCACACCGATT TGTAGATATATATACAAACAAAATCAAAAACTCTCACCCAGGCACTCACT CACTCACCAAGTCATAACATAACACAGATCATTTTACTTGTAAACGTCAA AGGTCTTGGGTACCCAGGATACCTTGCTTCACCCACGTAGTCGTAGATAG GTCTAGCTCTGGTATTTTAGACTAAATCAAAATTAGCAAGAGTTTCAAGC GGACTCGCATTCGAAGAAGTGCTCCCTCAGATCGGATAATGTAAATAGAT TATCTCAGGCATCGAATGCGTAGGTCGTGCAGTTTGGATATTTATATTAA CGAATGTATATTTAATATGAATTGTAAATATAGATAAGCACCGGGCCATT GTATAAGTGCGTAGTCTATTTAATCAATTTTATCATAACGCCTTAGTTTT ACACTGAACATAATTTTAATCATAGCCTTAGTTAGTTGTGTAACGAATTG GAGAAATGTGTGCACCCTCAGCAATTACTGAATATTACAGCAAAACTATT TTGAACCAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12024534..12025372 | 2119..2957 | 4150 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 12012378..12013136 | 1..759 | 3735 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 12018887..12019247 | 756..1116 | 1805 | 100 | Plus |
chr2R | 21145070 | chr2R | 12019656..12019983 | 1116..1443 | 1595 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 12020770..12021031 | 1444..1705 | 1280 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 12023518..12023691 | 1805..1978 | 840 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 12023756..12023897 | 1979..2120 | 680 | 98.6 | Plus |
chr2R | 21145070 | chr2R | 12023354..12023453 | 1705..1804 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16137203..16138045 | 2119..2961 | 4215 | 100 | Plus |
2R | 25286936 | 2R | 16125025..16125783 | 1..759 | 3795 | 100 | Plus |
2R | 25286936 | 2R | 16131539..16131899 | 756..1116 | 1805 | 100 | Plus |
2R | 25286936 | 2R | 16132308..16132635 | 1116..1443 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 16133422..16133683 | 1444..1705 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 16136187..16136360 | 1805..1978 | 870 | 100 | Plus |
2R | 25286936 | 2R | 16136425..16136566 | 1979..2120 | 710 | 100 | Plus |
2R | 25286936 | 2R | 16136026..16136125 | 1705..1804 | 500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12012378..12013135 | 1..758 | 99 | -> | Plus |
chr2R | 12018890..12019247 | 759..1116 | 100 | -> | Plus |
chr2R | 12019657..12019983 | 1117..1443 | 99 | -> | Plus |
chr2R | 12020770..12021031 | 1444..1705 | 99 | -> | Plus |
chr2R | 12023355..12023453 | 1706..1804 | 100 | -> | Plus |
chr2R | 12023518..12023691 | 1805..1978 | 98 | -> | Plus |
chr2R | 12023756..12023897 | 1979..2120 | 98 | -> | Plus |
chr2R | 12024536..12025372 | 2121..2957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spin-RA | 1..1818 | 353..2170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spin-RA | 1..1818 | 353..2170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spin-RA | 1..1818 | 353..2170 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spin-RA | 43..2999 | 1..2957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spin-RA | 45..3001 | 1..2957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spin-RA | 45..3001 | 1..2957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16136425..16136566 | 1979..2120 | 100 | -> | Plus |
2R | 16125025..16125782 | 1..758 | 100 | -> | Plus |
2R | 16131542..16131899 | 759..1116 | 100 | -> | Plus |
2R | 16132309..16132635 | 1117..1443 | 100 | -> | Plus |
2R | 16133422..16133683 | 1444..1705 | 100 | -> | Plus |
2R | 16136027..16136125 | 1706..1804 | 100 | -> | Plus |
2R | 16136187..16136360 | 1805..1978 | 100 | -> | Plus |
2R | 16137205..16138041 | 2121..2957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16136425..16136566 | 1979..2120 | 100 | -> | Plus |
2R | 16125025..16125782 | 1..758 | 100 | -> | Plus |
2R | 16131542..16131899 | 759..1116 | 100 | -> | Plus |
2R | 16132309..16132635 | 1117..1443 | 100 | -> | Plus |
2R | 16133422..16133683 | 1444..1705 | 100 | -> | Plus |
2R | 16136027..16136125 | 1706..1804 | 100 | -> | Plus |
2R | 16136187..16136360 | 1805..1978 | 100 | -> | Plus |
2R | 16137205..16138041 | 2121..2957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16136425..16136566 | 1979..2120 | 100 | -> | Plus |
2R | 16125025..16125782 | 1..758 | 100 | -> | Plus |
2R | 16131542..16131899 | 759..1116 | 100 | -> | Plus |
2R | 16132309..16132635 | 1117..1443 | 100 | -> | Plus |
2R | 16133422..16133683 | 1444..1705 | 100 | -> | Plus |
2R | 16136027..16136125 | 1706..1804 | 100 | -> | Plus |
2R | 16136187..16136360 | 1805..1978 | 100 | -> | Plus |
2R | 16137205..16138041 | 2121..2957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12012530..12013287 | 1..758 | 100 | -> | Plus |
arm_2R | 12019047..12019404 | 759..1116 | 100 | -> | Plus |
arm_2R | 12019814..12020140 | 1117..1443 | 100 | -> | Plus |
arm_2R | 12020927..12021188 | 1444..1705 | 100 | -> | Plus |
arm_2R | 12023532..12023630 | 1706..1804 | 100 | -> | Plus |
arm_2R | 12023692..12023865 | 1805..1978 | 100 | -> | Plus |
arm_2R | 12023930..12024071 | 1979..2120 | 100 | -> | Plus |
arm_2R | 12024710..12025546 | 2121..2957 | 100 | Plus |
Translation from 352 to 2169
> GH09820.pep MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG MKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADP VICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADIL LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE RGQIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11295-PA | 712 | GF11295-PA | 1..436 | 1..449 | 1737 | 75.1 | Plus |
Dana\GF11295-PA | 712 | GF11295-PA | 446..671 | 365..587 | 902 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20571-PA | 605 | GG20571-PA | 1..605 | 1..605 | 2713 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22071-PA | 576 | GH22071-PA | 1..557 | 1..599 | 1855 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spin-PA | 605 | CG8428-PA | 1..605 | 1..605 | 3113 | 100 | Plus |
spin-PD | 630 | CG8428-PD | 1..598 | 1..598 | 3036 | 98.8 | Plus |
spin-PC | 605 | CG8428-PC | 1..605 | 1..605 | 2906 | 92.9 | Plus |
spin-PB | 630 | CG8428-PB | 1..598 | 1..598 | 2829 | 91.6 | Plus |
spin-PE | 402 | CG8428-PE | 1..365 | 1..365 | 1918 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19157-PA | 590 | GI19157-PA | 1..543 | 1..585 | 1797 | 62.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20621-PA | 609 | GL20621-PA | 1..574 | 1..586 | 2201 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21072-PB | 591 | GA21072-PB | 1..589 | 1..601 | 2226 | 71.4 | Plus |
Dpse\GA21072-PA | 609 | GA21072-PA | 1..576 | 1..588 | 2198 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21663-PA | 605 | GM21663-PA | 1..605 | 1..605 | 2747 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11163-PA | 710 | GD11163-PA | 1..451 | 1..451 | 1968 | 89.6 | Plus |
Dsim\GD11163-PA | 710 | GD11163-PA | 472..710 | 367..605 | 1218 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22291-PA | 668 | GJ22291-PA | 1..447 | 1..492 | 1448 | 61.4 | Plus |
Dvir\GJ22291-PA | 668 | GJ22291-PA | 418..630 | 365..585 | 715 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21866-PA | 699 | GK21866-PA | 1..612 | 1..587 | 2013 | 66.7 | Plus |
Translation from 352 to 2169
> GH09820.hyp MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG MKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADP VICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADIL LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE RGQIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spin-PA | 605 | CG8428-PA | 1..605 | 1..605 | 3113 | 100 | Plus |
spin-PD | 630 | CG8428-PD | 1..598 | 1..598 | 3036 | 98.8 | Plus |
spin-PC | 605 | CG8428-PC | 1..605 | 1..605 | 2906 | 92.9 | Plus |
spin-PB | 630 | CG8428-PB | 1..598 | 1..598 | 2829 | 91.6 | Plus |
spin-PE | 402 | CG8428-PE | 1..365 | 1..365 | 1918 | 99.7 | Plus |