Clone GH09820 Report

Search the DGRC for GH09820

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:98
Well:20
Vector:pOT2
Associated Gene/Transcriptspin-RA
Protein status:GH09820.pep: gold
Sequenced Size:2976

Clone Sequence Records

GH09820.complete Sequence

2976 bp assembled on 2013-05-10

GenBank Submission: BT150099.1

> GH09820.complete
CGTCGCGGAAGAAACAAGAAAGAAAAACAGCGAGAAGCACTGCAAATGCA
TTGGCTGCATTTAAAGAACAACCGCGATTAGAGGAAGTGTCTCAGTACAC
AGTCGAATTAGCCATACAAATTGGCAAAAGTGTTATAAAAGAGAAGCGCG
GTGGTGTGCCAACAGCCCAAGAGCAAATTCTTTTGCATTCGCTTTTGAAC
CGCTTTCATCGCGAGTTCCCGTTTCTCTGTGTGCGTGAGCAAAGAGCGTG
TGCAAATAACTTTTTGCCGCGTTGTCCGCCTGCTGCGAATTTCCAACCGA
AAGAGGACAGCGAGAGCGCGAGAAGAGAAGAGAGGATCGAGTGATCGGGT
GAATGTCGCTGAAACACCAGAAGCAATCCTACCAACCGCTCCCAACGGCG
GCCGCCATGGACAATCCGGCGATGATCCAGAGCAGCGGTAGCAGTGGGAG
CAGCTCCTCTGAGGAGGGCGGGAGTCGTGAGGATGTGGCCAATCTATCGC
CGCTCGGACTGCCTACGACCTACTCGTCACAGCAATTGATGCCCTCGGAT
ACGGACAGCATGGAGGAGGAGCGGCACCGACTGCGTCCCCACCACCATCA
CCACCACCCACTGGGCGAGCACCACCACATCCCGGGCATACCACCATCCG
CCGTCGTGCCATCGCGTCTCTCCAGCGTGGGCAGATCGCAGTGGTTCACC
GTTACCGTGCTATGCTTCGTCAACCTCATCAACTACATGGATCGCTTTAC
GATCGCAGGAGTTCTCACAGATGTCCGAAATGATTTCGATATTGGCAATG
ATAGTGCCGGACTTCTCCAGACGGTCTTCGTTATCTCGTACATGGTATGC
GCCCCCATCTTCGGCTATCTGGGCGATCGTTACTCCCGCCCCTGGATAAT
GGCGGTGGGCGTGGGTCTGTGGAGCACCACCACCCTACTGGGGTCGTTCA
TGAAGCAGTTTGGATGGTTCATCGCCTTCAGAGCGCTGGTCGGGATCGGC
GAGGCATCGTACAGTACCATCGCACCGACGATTATCTCGGATCTGTTCGT
GCACGACATGCGCTCCAAGATGCTGGCACTGTTCTACTTTGCCATACCCG
TGGGATCCGGTCTGGGATACATTGTGGGATCCAAGACAGCGCACCTGGCC
AACGATTGGCGCTGGGCTCTGAGGGTCACGCCCATTCTGGGCATTGTGGC
AGTTTTCCTCATTTTGCTGATCAAGGATCCGGTGCGGGGTCACAGCGAGG
GATCGCACAATTTGGAGGCCACTACCTACAAGCAGGACATCAAGGCGTTG
GTCAGGAACCGTTCCTTCATGCTCTCCACGGCTGGATTCACGTGCGTTGC
CTTCGTGGCCGGAGCACTGGCCTGGTGGGGACCTTCCTTCATCTATCTAG
GCATGAAGATGCAGCCCGGCAACGAGAACATTGTCCAGGACGATGTTGCG
TTCAACTTCGGAGTCATCACCATGTTGGCGGGCCTGCTGGGCGTGCCGCT
GGGCTCGTTCCTGTCCCAGTACCTGGTTAAGCGTTATCCCACGGCGGATC
CGGTAATCTGCGCCTTTGGGCTGCTCGTGAGTGCGCCGCTGCTGACGGGC
GCCTGTCTCTTGGTCAACAGCAATTCGGTTGGCACCTATGCACTCATATT
TTTCGGGCAGTTAGCTTTAAATTTGAATTGGGCAATTGTTGCGGACATAC
TGCTGTATGTGGTGGTTCCCACGCGACGTTCAACAGCCGAGGCCTTCCAA
ATCCTCATCTCACACGCACTCGGTGATGCCGGCAGTCCGTATTTGGTTGG
AGCAATCTCCGAGGCCATCATGAAACACCTGCACAAGAACCCCAGCGACT
CTGGACTGACCACCGAGCTGCGAAGCATGTCCCAAGTGGCAGGTTCCGCG
ATCAGTAATGCCACCCAGGTGATCGCGGAAGCCACCACCAGTTTGATGGA
AACAGCACGCTCGTCAGCCTCTCAGGAATACTCTGATGTGGAGCAATTCG
AGGGACTGCAATATGCGCTCTTCTCCACCAGTTTTGTGGAGGTGCTGGGC
GGCATTTTCTTCATATTCACCGCCTGCTTTATCATCAAAGACAAGTACAA
TGCCACACGAGGACTGCAAGATGCCACGGCTCAGCAACAGCAGCGGGATG
AGCGCGGTCAGATTGCCTAATACCAGCCGATTCTGGAGGTTATGCTGCGC
ACTCAGAGCTCCGATGGCATGCCGGGTGAACTGATACTGACTGAAAACCA
TCTTTAATTTAATTTACGGTCACTCGCACCACGCACATCCCGCATCGGAT
CGTACTGGAAGCTTACGGGGACGGGGACACCTTGCTCAGTTGGGCGGACA
AGTTCCCGATGTTCATGTTCCTATTGGAAGGGATCGGAGGAAGGAGGAAA
ATGGGGGAAAGGACCACCATGCCAACACGTTCAAGCACGCCACACCGATT
TGTAGATATATATACAAACAAAATCAAAAACTCTCACCCAGGCACTCACT
CACTCACCAAGTCATAACATAACACAGATCATTTTACTTGTAAACGTCAA
AGGTCTTGGGTACCCAGGATACCTTGCTTCACCCACGTAGTCGTAGATAG
GTCTAGCTCTGGTATTTTAGACTAAATCAAAATTAGCAAGAGTTTCAAGC
GGACTCGCATTCGAAGAAGTGCTCCCTCAGATCGGATAATGTAAATAGAT
TATCTCAGGCATCGAATGCGTAGGTCGTGCAGTTTGGATATTTATATTAA
CGAATGTATATTTAATATGAATTGTAAATATAGATAAGCACCGGGCCATT
GTATAAGTGCGTAGTCTATTTAATCAATTTTATCATAACGCCTTAGTTTT
ACACTGAACATAATTTTAATCATAGCCTTAGTTAGTTGTGTAACGAATTG
GAGAAATGTGTGCACCCTCAGCAATTACTGAATATTACAGCAAAACTATT
TTGAACCAAAAAAAAAAAAAAAAAAA

GH09820.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12024534..12025372 2119..2957 4150 99.6 Plus
chr2R 21145070 chr2R 12012378..12013136 1..759 3735 99.5 Plus
chr2R 21145070 chr2R 12018887..12019247 756..1116 1805 100 Plus
chr2R 21145070 chr2R 12019656..12019983 1116..1443 1595 99.1 Plus
chr2R 21145070 chr2R 12020770..12021031 1444..1705 1280 99.2 Plus
chr2R 21145070 chr2R 12023518..12023691 1805..1978 840 98.9 Plus
chr2R 21145070 chr2R 12023756..12023897 1979..2120 680 98.6 Plus
chr2R 21145070 chr2R 12023354..12023453 1705..1804 500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16137203..16138045 2119..2961 4215 100 Plus
2R 25286936 2R 16125025..16125783 1..759 3795 100 Plus
2R 25286936 2R 16131539..16131899 756..1116 1805 100 Plus
2R 25286936 2R 16132308..16132635 1116..1443 1640 100 Plus
2R 25286936 2R 16133422..16133683 1444..1705 1310 100 Plus
2R 25286936 2R 16136187..16136360 1805..1978 870 100 Plus
2R 25286936 2R 16136425..16136566 1979..2120 710 100 Plus
2R 25286936 2R 16136026..16136125 1705..1804 500 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:24:08 has no hits.

GH09820.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:25:17 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12012378..12013135 1..758 99 -> Plus
chr2R 12018890..12019247 759..1116 100 -> Plus
chr2R 12019657..12019983 1117..1443 99 -> Plus
chr2R 12020770..12021031 1444..1705 99 -> Plus
chr2R 12023355..12023453 1706..1804 100 -> Plus
chr2R 12023518..12023691 1805..1978 98 -> Plus
chr2R 12023756..12023897 1979..2120 98 -> Plus
chr2R 12024536..12025372 2121..2957 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-05-10 12:07:20 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 1..1818 353..2170 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:27:38 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 1..1818 353..2170 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:57:42 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 1..1818 353..2170 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-10 12:07:20 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 43..2999 1..2957 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:27:38 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 45..3001 1..2957 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:57:42 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RA 45..3001 1..2957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:17 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16136425..16136566 1979..2120 100 -> Plus
2R 16125025..16125782 1..758 100 -> Plus
2R 16131542..16131899 759..1116 100 -> Plus
2R 16132309..16132635 1117..1443 100 -> Plus
2R 16133422..16133683 1444..1705 100 -> Plus
2R 16136027..16136125 1706..1804 100 -> Plus
2R 16136187..16136360 1805..1978 100 -> Plus
2R 16137205..16138041 2121..2957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:17 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16136425..16136566 1979..2120 100 -> Plus
2R 16125025..16125782 1..758 100 -> Plus
2R 16131542..16131899 759..1116 100 -> Plus
2R 16132309..16132635 1117..1443 100 -> Plus
2R 16133422..16133683 1444..1705 100 -> Plus
2R 16136027..16136125 1706..1804 100 -> Plus
2R 16136187..16136360 1805..1978 100 -> Plus
2R 16137205..16138041 2121..2957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:17 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16136425..16136566 1979..2120 100 -> Plus
2R 16125025..16125782 1..758 100 -> Plus
2R 16131542..16131899 759..1116 100 -> Plus
2R 16132309..16132635 1117..1443 100 -> Plus
2R 16133422..16133683 1444..1705 100 -> Plus
2R 16136027..16136125 1706..1804 100 -> Plus
2R 16136187..16136360 1805..1978 100 -> Plus
2R 16137205..16138041 2121..2957 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:27:38 Download gff for GH09820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12012530..12013287 1..758 100 -> Plus
arm_2R 12019047..12019404 759..1116 100 -> Plus
arm_2R 12019814..12020140 1117..1443 100 -> Plus
arm_2R 12020927..12021188 1444..1705 100 -> Plus
arm_2R 12023532..12023630 1706..1804 100 -> Plus
arm_2R 12023692..12023865 1805..1978 100 -> Plus
arm_2R 12023930..12024071 1979..2120 100 -> Plus
arm_2R 12024710..12025546 2121..2957 100   Plus

GH09820.pep Sequence

Translation from 352 to 2169

> GH09820.pep
MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP
LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA
VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND
SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM
KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV
GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG
SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG
MKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADP
VICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADIL
LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS
GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE
GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE
RGQIA*

GH09820.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11295-PA 712 GF11295-PA 1..436 1..449 1737 75.1 Plus
Dana\GF11295-PA 712 GF11295-PA 446..671 365..587 902 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20571-PA 605 GG20571-PA 1..605 1..605 2713 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22071-PA 576 GH22071-PA 1..557 1..599 1855 62.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
spin-PA 605 CG8428-PA 1..605 1..605 3113 100 Plus
spin-PD 630 CG8428-PD 1..598 1..598 3036 98.8 Plus
spin-PC 605 CG8428-PC 1..605 1..605 2906 92.9 Plus
spin-PB 630 CG8428-PB 1..598 1..598 2829 91.6 Plus
spin-PE 402 CG8428-PE 1..365 1..365 1918 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19157-PA 590 GI19157-PA 1..543 1..585 1797 62.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20621-PA 609 GL20621-PA 1..574 1..586 2201 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21072-PB 591 GA21072-PB 1..589 1..601 2226 71.4 Plus
Dpse\GA21072-PA 609 GA21072-PA 1..576 1..588 2198 72 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21663-PA 605 GM21663-PA 1..605 1..605 2747 91.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11163-PA 710 GD11163-PA 1..451 1..451 1968 89.6 Plus
Dsim\GD11163-PA 710 GD11163-PA 472..710 367..605 1218 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22291-PA 668 GJ22291-PA 1..447 1..492 1448 61.4 Plus
Dvir\GJ22291-PA 668 GJ22291-PA 418..630 365..585 715 66.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21866-PA 699 GK21866-PA 1..612 1..587 2013 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11757-PA 738 GE11757-PA 1..451 1..451 1965 89.6 Plus
Dyak\GE11757-PA 738 GE11757-PA 498..738 365..605 1195 95.9 Plus

GH09820.hyp Sequence

Translation from 352 to 2169

> GH09820.hyp
MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP
LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA
VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND
SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM
KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV
GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG
SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG
MKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADP
VICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADIL
LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS
GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE
GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE
RGQIA*

GH09820.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
spin-PA 605 CG8428-PA 1..605 1..605 3113 100 Plus
spin-PD 630 CG8428-PD 1..598 1..598 3036 98.8 Plus
spin-PC 605 CG8428-PC 1..605 1..605 2906 92.9 Plus
spin-PB 630 CG8428-PB 1..598 1..598 2829 91.6 Plus
spin-PE 402 CG8428-PE 1..365 1..365 1918 99.7 Plus