Clone GH09856 Report

Search the DGRC for GH09856

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:98
Well:56
Vector:pOT2
Associated Gene/TranscriptEaat2-RB
Protein status:GH09856.pep: validated full length
Preliminary Size:3121
Sequenced Size:3142

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3159 2001-01-01 Release 2 assignment
CG3159 2001-11-08 Blastp of sequenced clone
CG3159 2003-01-01 Sim4 clustering to Release 3
Eaat2 2008-04-29 Release 5.5 accounting
Eaat2 2008-08-15 Release 5.9 accounting
Eaat2 2008-12-18 5.12 accounting

Clone Sequence Records

GH09856.complete Sequence

3142 bp (3142 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069083

> GH09856.complete
CAAGCTTGAAGTGAGCGGTTCGCATTCCGAGGAGCTGTGAATCAGGAGCA
GAAAAAGGATAACCAGACACGGCTGAAAATAGTGAAAACGAAAGCGGAAG
AAGGCTGAACCTAAGGCCACGCTGTGGGGCTTGGAAAAAGTAACCAGGAG
CATATAATCACCTCCTATTTGAAAACGAATTTAAGGTCGAACAGGACCTG
ACACAGTGACAGACGACCGCTGACCCGGACTCTGAAAAATCGATTATCTG
TGTGTGTGCACAACACAGGCCGCGAGTGCGAGTGCAGTTCAGCGTCTTGA
AGAGAGCCAGCACCACCCTCCGCCCGCTTACGAAGGTCAGCCCCATCTGA
TTGCCTTTCCAGAGCGGTCAGTTGCCAAAAGCCACAACAACGGAGCCGTT
AACAAACAATCGCCGCAGCAGCGAGGAAGGAACGAGGCTTAGAGGCGGAA
CGCAAACGCCGCCGAACAAAAGGAAGACAACGCCGCACCGGTAGAATGGC
CTACCTAATCAACATCCTCAAGTTCAATGTGAAGTACTTAAAAAATCAAT
AACTGGACACCAGCACCGACCGAGCAACCAGCCAAACATCCATATATTCC
GCAACAGGAGCAGTCGCATTCCAACTGAAACACAGCGGGGAATCCCCCAC
CAAGCGCTAGCTCTCTCTTTCTCTCGGTCGCCCTGTCTTGCTTGCTCCTC
TCTTGGTTTTTGGTTATCGGTTTTGTCGCCACCGCTCCGCTGCGCCTTAA
TCTGCGCCACCCGGAAGCTTGGACATTTGGACAATGGAAATGGAAAAGTC
TGGCAAATTTTCAGATTACCTCTTCGCCAAAATGGGTCCCCCCACCTCAA
CTGAGCTGCCTCCGAAGACCACGGAATGCAGCGATGCCCCCGTGGAGTTG
ACCGGTTACCGCAGGTGGCTCTCCGAGAATCTAATGCTCCTGGTCACCCT
TTCCGGAGTTCTCCTTGGTGTAATACTAGGACTCTCCTTACGGCCGCTTA
ATTTACATGGGGACTCCATCATGCTGATTTCCTATCCTGGCGAACTGTTT
ATGCGCGTACTCAAGCTGATGATTTTGCCGCTAGTTATATCGAGCCTTAT
TGCCGGATCGGCCAGCCTTAACGCCAAAATGAACGGCAAGATAGCGCTGC
GCACGTTGGTTTACTTTGCCAGCACTTCGTTCTTTAACGCTGCACTGGGA
ATCGCTCTCGTTCTGCTCATCCATCCTGGAAATCCGGATCTGCACAATGC
GGACGATCGATCTACAGATCGGCGGGCAGTTAACCTTCTAGATAGTCTTT
TGGATTTGGGCAGGAACGTATTCCCGGACAACCTGTTTCAGGCCTCCATT
CAGCAGGCGCACACCGTCTACTTGCCCAAGCCGAGTATCCTGCACGTCTT
CAACGAAACGATGAATGACACCTTGGCATCCGGATCGGAGGCCCAACGCT
TGTCTGAAGACCTTACGGAGGATGTGGTGCTGGTGAGGGACATCCAGTAC
CGCAGTGGAACCAACACCCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGG
TACTTTTTTGGGAACCATCGGCCAGAAGGGTCAGGTCGTGGTTGACTTCT
TTGCCGCCATTTTTGAGCGCCGCTGCCCTGCCCATTACATTCCGCTGCAT
GAACGAGAAACTCAAGGTGGATCCGCGGATCACGCGATTTGTCCTTCCAA
TCGGATGCAACATCAACATGGACGGAACGGCCCTATATATCGCAGTGGCA
TCGATATTCATTGCCCAGATGAGCGGCATGGTTCTGGGATTTGGAGAGCT
CCTTACGGTCCTTCTGACCTCCACGGCTGCCTCCATGAGCTCGGCCAGCG
TTCCGAGTGCTGCCCTGGTACTCCTTCTCGTGGTGCTGACCGCCATTGAT
GCGCCTGTTCAGGATGTCACGCTGCTCTTCGCCGTGGACTGGTTTGTGTG
AGGATCGGATTCGCACCACCAATAATATGCTGGGTGACTGCTACACTGCT
GCCGTAGTCGAGGAGTTGTCGCGAAAGGAGTTGATGGCTTTGGATGCCGC
TTCCGTTAACTATCAGGACATGCCCGCTGGCACCCCCAATGGACATGGAC
ATGGACATGGACACCACGATGGAGGACTTCTCGAGGGGCAGACCGAGTTG
GAGACGAGCAGCAAGTGCGTTATGACAATGACGGACTCGGTGGTGGTGGA
CATTAGTGCGGTGATGAATAACGTGAACCTGCAGCAGGAGCATTGTAACC
GCAGGGTCTAGGATGTTTTGAACAGCCCAGATTCGATTTTAGTTCGTCAG
CATCAGCTCTATAGTCCCAGTAGCGCCACCACCACAATTACAACACATAT
GATATTCACCACCAATAGACCGCAGTGTTCCCCAACAAACAAATTTTTGA
TATAGGATCTTTAAACAACAAATGATCGGATATATATCGAGAGACTGTCT
GACGAACCCACCCGCATTGAATTTACTCCTCTTTTGGACCAGTGTCGATA
GCAATTAATTAGCCTGAACACTTAAAGGACTCCGCATACGTAAATATGGA
ATATTCATCTTGTAGGACTCGCATAAGAATATTATATGCCACATGTAAGC
AAAGGACGAAAAAACGCTGAGCGCGGGATTTTTTGGGATCCATCCTGGGA
ACTATGTGCATAATCTATGGGTATTATTTTGTAAGCTCGATTGTGATGGG
GTCACCAAGCTGATTTGTTTTATAATGTTGTTTATTTATACGTTATATAT
GTGTTGTTTGGGAATATTATGAGAGATCAATGTTTAAGTTGATTGAGGAG
GGATTGAAAGGTAGAATCGCAGGTTGTACAAGAAGCTGGCCTAGATTTAG
TTTTAGTTGACCTCCTATTTTCCCGAAACTCACGTTTGGTTATACGCCCC
TGATAAACAATTAACAACTAATGGCTATGGAATATCACTTACCAATTACT
CATTTTCAGTTACTGATACCAAATATCACACATGCATTCGTAGACTGATA
GCAGACTTAGTAGCGATAACTAATATGTATCTGCATATATGCAATACTTA
CTAACCAATATCCGACATTCGATTTGTACGCGGACGCATACGCTGAATAC
AATAAAGTTATTATATACCACCTAAAAAAAAAAAAAAAAAAA

GH09856.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-RC 3441 Eaat2-RC 14..1630 1..1617 8085 100 Plus
Eaat2-RC 3441 Eaat2-RC 1897..3399 1618..3124 7450 99.7 Plus
Eaat2.a 3178 Eaat2.a 1668..3170 1618..3124 7450 99.7 Plus
Eaat2-RA 3205 Eaat2-RA 1661..3163 1618..3124 7450 99.7 Plus
Eaat2.a 3178 Eaat2.a 597..1401 813..1617 4025 100 Plus
Eaat2-RA 3205 Eaat2-RA 590..1394 813..1617 4025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 740706..741685 980..1 4900 100 Minus
chr2L 23010047 chr2L 737109..738177 3115..2063 4780 96.7 Minus
chr2L 23010047 chr2L 738408..738744 1952..1616 1685 100 Minus
chr2L 23010047 chr2L 740263..740599 1314..978 1685 100 Minus
chr2L 23010047 chr2L 739616..739922 1617..1311 1520 99.7 Minus
chr2L 23010047 chr2L 738225..738340 2067..1952 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 737211..738272 3124..2063 5310 100 Minus
2L 23513712 2L 740799..741778 980..1 4900 100 Minus
2L 23513712 2L 738503..738839 1952..1616 1685 100 Minus
2L 23513712 2L 740356..740692 1314..978 1685 100 Minus
2L 23513712 2L 739711..740017 1617..1311 1535 100 Minus
2L 23513712 2L 738320..738435 2067..1952 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 737211..738272 3124..2063 5310 100 Minus
2L 23513712 2L 740799..741778 980..1 4900 100 Minus
2L 23513712 2L 740356..740692 1314..978 1685 100 Minus
2L 23513712 2L 738503..738839 1952..1616 1685 100 Minus
2L 23513712 2L 739711..740017 1617..1311 1535 100 Minus
2L 23513712 2L 738320..738435 2067..1952 580 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:22:36 has no hits.

GH09856.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:23:17 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 740264..740597 980..1313 100 <- Minus
chr2L 737103..737619 2605..3123 98 <- Minus
chr2L 737640..738173 2067..2604 94 <- Minus
chr2L 738226..738340 1952..2066 100 <- Minus
chr2L 738409..738742 1618..1951 100 <- Minus
chr2L 739616..739919 1314..1617 99 <- Minus
chr2L 740707..741685 1..979 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:45 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 1..1116 784..1899 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:09 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 1..834 784..1617 100 -- Plus
Eaat2-RC 1101..1740 1618..2261 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:17:19 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 1..834 784..1617 100 -- Plus
Eaat2-RC 1101..1740 1618..2261 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:46 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 1..1116 784..1899 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:08 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 1..834 784..1617 100 -- Plus
Eaat2-RC 1101..1740 1618..2261 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:13:32 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 1..3123 1..3123 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:09 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 1..1617 1..1617 100 -- Plus
Eaat2-RC 1884..3385 1618..3123 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:17:19 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 14..1630 1..1617 100 -- Plus
Eaat2-RC 1897..3398 1618..3123 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:46 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 1..3123 1..3123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:08 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 14..1630 1..1617 100 -- Plus
Eaat2-RC 1897..3398 1618..3123 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:17 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
2L 739711..740014 1314..1617 100 <- Minus
2L 737212..738268 2067..3123 100 <- Minus
2L 738321..738435 1952..2066 100 <- Minus
2L 738504..738837 1618..1951 100 <- Minus
2L 740357..740690 980..1313 100 <- Minus
2L 740800..741778 1..979 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:17 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
2L 739711..740014 1314..1617 100 <- Minus
2L 737212..738268 2067..3123 100 <- Minus
2L 738321..738435 1952..2066 100 <- Minus
2L 738504..738837 1618..1951 100 <- Minus
2L 740357..740690 980..1313 100 <- Minus
2L 740800..741778 1..979 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:17 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
2L 739711..740014 1314..1617 100 <- Minus
2L 737212..738268 2067..3123 100 <- Minus
2L 738321..738435 1952..2066 100 <- Minus
2L 738504..738837 1618..1951 100 <- Minus
2L 740357..740690 980..1313 100 <- Minus
2L 740800..741778 1..979 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:17:19 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 737212..738268 2067..3123 100 <- Minus
arm_2L 738321..738435 1952..2066 100 <- Minus
arm_2L 738504..738837 1618..1951 100 <- Minus
arm_2L 739711..740014 1314..1617 100 <- Minus
arm_2L 740357..740690 980..1313 100 <- Minus
arm_2L 740800..741778 1..979 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:39 Download gff for GH09856.complete
Subject Subject Range Query Range Percent Splice Strand
2L 740357..740690 980..1313 100 <- Minus
2L 737212..738268 2067..3123 100 <- Minus
2L 738321..738435 1952..2066 100 <- Minus
2L 738504..738837 1618..1951 100 <- Minus
2L 739711..740014 1314..1617 100 <- Minus
2L 740800..741778 1..979 100   Minus

GH09856.pep Sequence

Translation from 783 to 1898

> GH09856.pep
MEMEKSGKFSDYLFAKMGPPTSTELPPKTTECSDAPVELTGYRRWLSENL
MLLVTLSGVLLGVILGLSLRPLNLHGDSIMLISYPGELFMRVLKLMILPL
VISSLIAGSASLNAKMNGKIALRTLVYFASTSFFNAALGIALVLLIHPGN
PDLHNADDRSTDRRAVNLLDSLLDLGRNVFPDNLFQASIQQAHTVYLPKP
SILHVFNETMNDTLASGSEAQRLSEDLTEDVVLVRDIQYRSGTNTLGIVF
FCLVFGTFLGTIGQKGQVVVDFFAAIFERRCPAHYIPLHERETQGGSADH
AICPSNRMQHQHGRNGPIYRSGIDIHCPDERHGSGIWRAPYGPSDLHGCL
HELGQRSECCPGTPSRGADRH*

GH09856.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14874-PA 550 GF14874-PA 1..262 17..278 1211 93.5 Plus
Dana\GF22719-PA 479 GF22719-PA 11..229 42..278 298 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24632-PA 559 GG24632-PA 1..262 17..278 1337 98.1 Plus
Dere\GG25341-PA 479 GG25341-PA 11..229 42..278 297 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10499-PA 564 GH10499-PA 1..272 17..278 1167 86 Plus
Dgri\GH13320-PA 479 GH13320-PA 11..229 42..278 299 32.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-PC 579 CG3159-PC 1..278 1..278 1400 100 Plus
Eaat2-PD 563 CG3159-PD 1..262 17..278 1318 100 Plus
Eaat2-PA 563 CG3159-PA 1..262 17..278 1318 100 Plus
Eaat1-PD 479 CG3747-PD 11..229 42..278 301 31.7 Plus
Eaat1-PC 479 CG3747-PC 11..229 42..278 301 31.7 Plus
Eaat1-PA 479 CG3747-PA 11..229 42..278 301 31.7 Plus
Eaat1-PB 479 CG3747-PB 11..229 42..278 301 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18017-PA 562 GI18017-PA 1..270 17..278 1145 83.4 Plus
Dmoj\GI12287-PA 479 GI12287-PA 11..229 42..278 299 32.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15343-PA 557 GL15343-PA 1..270 17..278 1196 87.5 Plus
Dper\GL26138-PA 479 GL26138-PA 11..229 42..278 299 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16330-PA 557 GA16330-PA 1..270 17..278 1202 87.8 Plus
Dpse\GA17658-PA 479 GA17658-PA 11..229 42..278 299 31.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16647-PA 561 GM16647-PA 1..262 17..278 1358 99.2 Plus
Dsec\GM17428-PA 479 GM17428-PA 11..229 42..278 297 31.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22943-PA 561 GD22943-PA 1..262 17..278 1358 99.2 Plus
Dsim\GD23596-PA 482 GD23596-PA 11..229 42..278 299 31.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19655-PA 563 GJ19655-PA 13..271 23..278 1123 86.2 Plus
Dvir\GJ17856-PA 479 GJ17856-PA 11..229 42..278 302 32.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24626-PA 566 GK24626-PA 1..273 17..278 1105 86.8 Plus
Dwil\GK15079-PA 479 GK15079-PA 11..229 42..278 295 31.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15953-PA 559 GE15953-PA 1..262 17..278 1331 98.1 Plus
Dyak\GE18833-PA 479 GE18833-PA 11..229 42..278 297 31.7 Plus

GH09856.hyp Sequence

Translation from 783 to 1898

> GH09856.hyp
MEMEKSGKFSDYLFAKMGPPTSTELPPKTTECSDAPVELTGYRRWLSENL
MLLVTLSGVLLGVILGLSLRPLNLHGDSIMLISYPGELFMRVLKLMILPL
VISSLIAGSASLNAKMNGKIALRTLVYFASTSFFNAALGIALVLLIHPGN
PDLHNADDRSTDRRAVNLLDSLLDLGRNVFPDNLFQASIQQAHTVYLPKP
SILHVFNETMNDTLASGSEAQRLSEDLTEDVVLVRDIQYRSGTNTLGIVF
FCLVFGTFLGTIGQKGQVVVDFFAAIFERRCPAHYIPLHERETQGGSADH
AICPSNRMQHQHGRNGPIYRSGIDIHCPDERHGSGIWRAPYGPSDLHGCL
HELGQRSECCPGTPSRGADRH*

GH09856.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-PC 579 CG3159-PC 1..278 1..278 1400 100 Plus
Eaat2-PD 563 CG3159-PD 1..262 17..278 1318 100 Plus
Eaat2-PA 563 CG3159-PA 1..262 17..278 1318 100 Plus
Eaat1-PD 479 CG3747-PD 11..229 42..278 301 31.7 Plus
Eaat1-PC 479 CG3747-PC 11..229 42..278 301 31.7 Plus