Clone GH09876 Report

Search the DGRC for GH09876

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:98
Well:76
Vector:pOT2
Associated Gene/TranscriptCG10650-RA
Protein status:GH09876.pep: gold
Preliminary Size:1300
Sequenced Size:1521

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10650 2001-01-01 Release 2 assignment
CG10650 2002-05-15 Blastp of sequenced clone
CG10650 2003-01-01 Sim4 clustering to Release 3
CG10650 2008-04-29 Release 5.5 accounting
CG10650 2008-08-15 Release 5.9 accounting
CG10650 2008-12-18 5.12 accounting

Clone Sequence Records

GH09876.complete Sequence

1521 bp (1521 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118764

> GH09876.complete
CCAGCCGGTCCGACATTTCAGTTGAGAAGCCAGAAAGAATAGAAAACCGA
GAGCCATGAGAGAATACAGCCTGTGTATGATTGTGATAGCAGCTTTCATT
GCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTATTCGTGCACATC
GACGACGAATGACACTGGAAATTGTTTAACGAGTCCATCTACTCAAACTT
CTATAGAGTGTGATAATGAATGCTATACTCTTATTAACGCAGGAACTCTA
ACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTACCATCCTGCTC
GACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTGCCAGCAGTGCC
TCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATACGCAATACAAT
GCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAGTTGAATGACAA
CAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGCTGGAACGGAAT
CCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGGGACTATTCCCC
GCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAACTGCAATGCGGT
CTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGCCGGGTGCTTCA
CCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCACATCGGCCACC
ACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGTTGCCTCGTCTG
CAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGAGGCCGGTTCCT
GTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTACCAATGCGAAG
TCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGTTATACCATGAC
CTCAGGAACCAATGTTACCCGAGGGTGCCTAAACACCTTGGAGGCTGGCT
GCTCTACAACCAATGCCTGCACTTCCTGCTCCGAAAATGGCTGCAATGTG
GCTGCCGGCGAGTTCCAGTGCATTACATGCATTTCGAATGAGGTTTCCGG
CTGCTGGTCGGCCAAATATCCGGACACGCTCCCTTTGATCAACTGCCCCA
ATGGAACGTGCTACAGCGGAGTCTGGAATGAACTTGGAGTGCGAGGATGT
TTTACCGCTGCCAGCCACCTGATGCAGTACCAGTGCAATGCCAAAGTGGA
GGCCCATCAGTGCGAATTGTGTACGGAGAGCAAGTGCAACAAGGTACCCT
TCAATGGAGCAGGCGCACTCAGGAATGTGGGCGTGGTCGGCCTTCTGACG
GGAGTGGTGATCGCTCTACGCAGTGCCCTGTAATCCAACCACCTCCACGT
AGTTGGATGATCCAATCAAATTACCGGGTGCCTGGGTCTATGAGTAATGT
TAACTATTACAAAGCAACAGACAAAAAGACATAACCTAATTATAGGAGCT
GAAGCATTTTAAGAACACTTCCATAATCCCAAATAAATCATTTTAATAAA
ACAAAAAAAAAAAAAAAAAAA

GH09876.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-RA 1642 CG10650-RA 25..1528 1..1504 7520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18992837..18993723 1127..241 4315 99.1 Minus
chr2L 23010047 chr2L 18992317..18992691 1502..1128 1875 100 Minus
chr2L 23010047 chr2L 18994474..18994604 131..1 655 100 Minus
chr2L 23010047 chr2L 18994296..18994407 243..132 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18994137..18995023 1127..241 4435 100 Minus
2L 23513712 2L 18993615..18993991 1504..1128 1885 100 Minus
2L 23513712 2L 18995779..18995909 131..1 655 100 Minus
2L 23513712 2L 18995601..18995712 243..132 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18994137..18995023 1127..241 4435 100 Minus
2L 23513712 2L 18993615..18993991 1504..1128 1885 100 Minus
2L 23513712 2L 18995779..18995909 131..1 655 100 Minus
2L 23513712 2L 18995601..18995712 243..132 560 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:35:38 has no hits.

GH09876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:36:22 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18992317..18992691 1128..1502 100 <- Minus
chr2L 18992837..18993721 243..1127 99 <- Minus
chr2L 18994297..18994407 132..242 100 <- Minus
chr2L 18994474..18994604 1..131 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:48 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 1..1278 56..1333 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:00 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 1..1278 56..1333 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:09:20 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 1..1278 56..1333 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:36 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 1..1278 56..1333 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:39:50 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 1..1278 56..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:30:01 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 22..1523 1..1502 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:59 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 22..1523 1..1502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:09:20 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 26..1527 1..1502 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:36 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 22..1523 1..1502 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:50 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 26..1527 1..1502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:22 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18993617..18993991 1128..1502 100 <- Minus
2L 18994137..18995021 243..1127 100 <- Minus
2L 18995602..18995712 132..242 100 <- Minus
2L 18995779..18995909 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:22 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18993617..18993991 1128..1502 100 <- Minus
2L 18994137..18995021 243..1127 100 <- Minus
2L 18995602..18995712 132..242 100 <- Minus
2L 18995779..18995909 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:36:22 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18993617..18993991 1128..1502 100 <- Minus
2L 18994137..18995021 243..1127 100 <- Minus
2L 18995602..18995712 132..242 100 <- Minus
2L 18995779..18995909 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:09:20 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18995779..18995909 1..131 100   Minus
arm_2L 18993617..18993991 1128..1502 100 <- Minus
arm_2L 18994137..18995021 243..1127 100 <- Minus
arm_2L 18995602..18995712 132..242 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:58 Download gff for GH09876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18993617..18993991 1128..1502 100 <- Minus
2L 18994137..18995021 243..1127 100 <- Minus
2L 18995602..18995712 132..242 100 <- Minus
2L 18995779..18995909 1..131 100   Minus

GH09876.hyp Sequence

Translation from 55 to 1332

> GH09876.hyp
MREYSLCMIVIAAFIASQLDSTSALQCYSCTSTTNDTGNCLTSPSTQTSI
ECDNECYTLINAGTLTRGCLINGTACTLPSCSTCKEDNCNLNLVCQQCLG
EANCATTNVTDTQYNAVCPNNGQVCVNQLNDNKTVTRQCGDPCAAGTEST
CSSCSASLCNVGLFPANRRQCYNCSGENCNAVSNTLVAGCSQIDAGCFTT
GTSASNMTRGCTSATTEIKCASDSTDPSCLVCNSDFCNSPTYEREAGSCI
ICENCAEQQVATNAKSCGQAKYNQEVGCYTMTSGTNVTRGCLNTLEAGCS
TTNACTSCSENGCNVAAGEFQCITCISNEVSGCWSAKYPDTLPLINCPNG
TCYSGVWNELGVRGCFTAASHLMQYQCNAKVEAHQCELCTESKCNKVPFN
GAGALRNVGVVGLLTGVVIALRSAL*

GH09876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-PB 425 CG10650-PB 1..425 1..425 2339 100 Plus
CG10650-PA 425 CG10650-PA 1..425 1..425 2339 100 Plus
CG13492-PD 2979 CG13492-PD 2134..2536 25..397 268 25.9 Plus
CG13492-PD 2979 CG13492-PD 1291..1703 25..403 266 25.1 Plus
CG13492-PD 2979 CG13492-PD 2414..2790 56..397 252 25.8 Plus
CG13492-PD 2979 CG13492-PD 2555..2965 25..421 245 24.1 Plus
CG13492-PD 2979 CG13492-PD 1963..2372 27..395 233 24.1 Plus
CG13492-PD 2979 CG13492-PD 1202..1613 25..395 227 24.6 Plus
CG13492-PD 2979 CG13492-PD 1716..2116 25..397 222 23.2 Plus
CG13492-PD 2979 CG13492-PD 453..849 25..395 217 24.9 Plus
CG15773-PA 478 CG15773-PA 30..363 92..396 216 25.9 Plus
CG13492-PD 2979 CG13492-PD 866..1273 22..397 212 24.3 Plus
CG15773-PB 319 CG15773-PB 30..315 92..354 211 27.4 Plus
CG15773-PA 478 CG15773-PA 12..445 6..398 200 24.8 Plus
CG13492-PD 2979 CG13492-PD 2628..2947 20..314 193 23 Plus
CG13492-PD 2979 CG13492-PD 108..524 25..395 156 21.5 Plus

GH09876.pep Sequence

Translation from 55 to 1332

> GH09876.pep
MREYSLCMIVIAAFIASQLDSTSALQCYSCTSTTNDTGNCLTSPSTQTSI
ECDNECYTLINAGTLTRGCLINGTACTLPSCSTCKEDNCNLNLVCQQCLG
EANCATTNVTDTQYNAVCPNNGQVCVNQLNDNKTVTRQCGDPCAAGTEST
CSSCSASLCNVGLFPANRRQCYNCSGENCNAVSNTLVAGCSQIDAGCFTT
GTSASNMTRGCTSATTEIKCASDSTDPSCLVCNSDFCNSPTYEREAGSCI
ICENCAEQQVATNAKSCGQAKYNQEVGCYTMTSGTNVTRGCLNTLEAGCS
TTNACTSCSENGCNVAAGEFQCITCISNEVSGCWSAKYPDTLPLINCPNG
TCYSGVWNELGVRGCFTAASHLMQYQCNAKVEAHQCELCTESKCNKVPFN
GAGALRNVGVVGLLTGVVIALRSAL*

GH09876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14641-PA 285 GF14641-PA 26..285 170..425 308 35.6 Plus
Dana\GF14641-PA 285 GF14641-PA 1..182 1..174 215 40.3 Plus
Dana\GF11615-PA 2988 GF11615-PA 2426..2731 59..327 162 28.8 Plus
Dana\GF11615-PA 2988 GF11615-PA 2017..2227 125..326 155 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20742-PA 2978 GG20742-PA 2266..2537 131..399 153 27.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11596-PA 421 GH11596-PA 1..421 1..425 588 37.3 Plus
Dgri\GH20775-PA 2920 GH20775-PA 2219..2480 143..399 161 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-PB 425 CG10650-PB 1..425 1..425 2339 100 Plus
CG10650-PA 425 CG10650-PA 1..425 1..425 2339 100 Plus
CG13492-PD 2979 CG13492-PD 2134..2536 25..397 268 25.9 Plus
CG13492-PD 2979 CG13492-PD 1291..1703 25..403 266 25.1 Plus
CG13492-PD 2979 CG13492-PD 2414..2790 56..397 252 25.8 Plus
CG13492-PD 2979 CG13492-PD 2555..2965 25..421 245 24.1 Plus
CG13492-PD 2979 CG13492-PD 1963..2372 27..395 233 24.1 Plus
CG13492-PD 2979 CG13492-PD 1202..1613 25..395 227 24.6 Plus
CG13492-PD 2979 CG13492-PD 1716..2116 25..397 222 23.2 Plus
CG13492-PD 2979 CG13492-PD 453..849 25..395 217 24.9 Plus
CG15773-PA 478 CG15773-PA 30..363 92..396 216 25.9 Plus
CG13492-PD 2979 CG13492-PD 866..1273 22..397 212 24.3 Plus
CG15773-PB 319 CG15773-PB 30..315 92..354 211 27.4 Plus
CG15773-PA 478 CG15773-PA 12..445 6..398 200 24.8 Plus
CG13492-PD 2979 CG13492-PD 2628..2947 20..314 193 23 Plus
CG15170-PB 560 CG15170-PB 43..310 95..338 175 22.9 Plus
CG15170-PA 561 CG15170-PA 44..311 95..338 175 22.9 Plus
CG15170-PB 560 CG15170-PB 224..513 53..318 172 22.7 Plus
CG15170-PA 561 CG15170-PA 225..514 53..318 172 22.7 Plus
CG13492-PD 2979 CG13492-PD 108..524 25..395 156 21.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17165-PA 402 GI17165-PA 29..389 61..410 520 39.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19619-PA 422 GL19619-PA 10..404 9..406 916 50 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10468-PA 422 GA10468-PA 10..404 9..406 926 50.5 Plus
Dpse\GA13948-PA 549 GA13948-PA 178..415 151..368 160 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17043-PA 425 GM17043-PA 1..425 1..425 1914 88.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21791-PA 425 GD21791-PA 1..425 1..425 1932 88.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17670-PA 424 GJ17670-PA 1..424 1..425 576 39.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23784-PA 419 GK23784-PA 1..415 1..419 656 39.7 Plus
Dwil\GK15649-PA 2984 GK15649-PA 2266..2546 122..399 161 28.2 Plus
Dwil\GK15649-PA 2984 GK15649-PA 1865..2135 143..409 159 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12685-PA 426 GE12685-PA 1..426 1..425 1675 76.8 Plus