Clone GH09945 Report

Search the DGRC for GH09945

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:99
Well:45
Vector:pOT2
Associated Gene/Transcriptwal-RA
Protein status:GH09945.pep: gold
Preliminary Size:1224
Sequenced Size:1215

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8996 2000-02-14 Blastp of sequenced clone
CG8996 2003-01-01 Sim4 clustering to Release 3
wal 2008-04-29 Release 5.5 accounting
wal 2008-08-15 Release 5.9 accounting
wal 2008-12-18 5.12 accounting

Clone Sequence Records

GH09945.complete Sequence

1215 bp (1215 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132155

> GH09945.complete
AAACCTTTGGACTTTCTGTGATTTTACAGCGAAGCTCCAATAACCATCCA
ACATCCAAAATGTTCGCCAGCAACACGCGTAATCTTATGCGCAGCAGCAT
TTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAACAATGAGG
TACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAAGATCGGT
GGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCGCTTCCGA
GGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCCGAAAATG
CCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGTCCTGGCC
GCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTTCGGCTTT
CGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTGTCGCCCA
TTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCGCACTATC
TACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCGTTAAGGT
GATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGCGGTGGAA
GTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAGCCTGTCC
GAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGCTGGCCGG
AGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGAGATAACT
TCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGTGGGTGCC
TCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGCAGATCGG
TCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTCGGAATCT
CAGGCGCCATCCAGCACTTGGCTGGCATGAAGGACTCCAAGACGATTGTG
GCCATCAACAAGGATCCCGAAGCGCCCATCTTCCAGGTCGCCGATATTGG
CATCGTGGCAGATCTTTTCAAGGCCGTGCCCGAACTAACCGGAAAGTTGT
AAGGCGAGATTGTCACTTGCTGTAGTATAAAGATTGTGTACCGATGAATT
GATAACTGTTGCATTTATTTGAATTTTGACATAAGTCCGTGGAAGATTTT
CCCTTAAATTTTGTAATAAAACAAGCCGAAGACCTATTCTATGTGAAAAA
AAAAAAAAAAAAAAA

GH09945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RA 1479 wal-RA 127..1325 1..1199 5995 100 Plus
wal-RB 1409 wal-RB 111..1277 33..1199 5835 100 Plus
wal-RB 1409 wal-RB 11..44 1..34 170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7576247..7577199 1195..243 4765 100 Minus
chr2R 21145070 chr2R 7577756..7577897 243..102 710 100 Minus
chr2R 21145070 chr2R 7577989..7578057 101..33 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11688932..11689888 1199..243 4785 100 Minus
2R 25286936 2R 11690445..11690586 243..102 710 100 Minus
2R 25286936 2R 11690678..11690746 101..33 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11690131..11691087 1199..243 4785 100 Minus
2R 25260384 2R 11691644..11691785 243..102 710 100 Minus
2R 25260384 2R 11691877..11691945 101..33 345 100 Minus
2R 25260384 2R 11692012..11692045 34..1 170 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:22:29 has no hits.

GH09945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:23:37 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7578124..7578157 1..34 100   Minus
chr2R 7576247..7577199 243..1195 100 <- Minus
chr2R 7577757..7577897 102..242 100 <- Minus
chr2R 7577989..7578055 35..101 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:31:51 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 1..993 60..1052 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:28 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 1..993 60..1052 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:21 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 1..993 60..1052 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:06:48 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 1..993 60..1052 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:31:07 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 1..993 60..1052 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:34:16 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 30..1224 1..1195 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:27 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 30..1224 1..1195 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:21 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 18..1212 1..1195 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:06:48 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 30..1224 1..1195 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:07 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 18..1212 1..1195 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:37 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11688936..11689888 243..1195 100 <- Minus
2R 11690446..11690586 102..242 100 <- Minus
2R 11690678..11690744 35..101 100 <- Minus
2R 11690813..11690846 1..34 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:37 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11688936..11689888 243..1195 100 <- Minus
2R 11690446..11690586 102..242 100 <- Minus
2R 11690678..11690744 35..101 100 <- Minus
2R 11690813..11690846 1..34 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:23:37 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11688936..11689888 243..1195 100 <- Minus
2R 11690446..11690586 102..242 100 <- Minus
2R 11690678..11690744 35..101 100 <- Minus
2R 11690813..11690846 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:21 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576441..7577393 243..1195 100 <- Minus
arm_2R 7577951..7578091 102..242 100 <- Minus
arm_2R 7578183..7578249 35..101 100 <- Minus
arm_2R 7578318..7578351 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:44:26 Download gff for GH09945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11690135..11691087 243..1195 100 <- Minus
2R 11691645..11691785 102..242 100 <- Minus
2R 11691877..11691943 35..101 100 <- Minus
2R 11692012..11692045 1..34 100   Minus

GH09945.hyp Sequence

Translation from 2 to 1051

> GH09945.hyp
TFGLSVILQRSSNNHPTSKMFASNTRNLMRSSILQRCKSTLVVAEHNNEV
LNPITLNTISAAKKIGGDVTVLVAGTKCGPASEALSKVDGVTKVLVAENA
AFNGFTAESLTPLVLAAQSQFKFTHILAGASAFGKNVLPRVAAKLDVSPI
SEIIDVKSDDTFVRTIYAGNAILTLKSKDAVKVITVRSTNFPPAATSGGS
GAVEQAPAGDFASSLSEFVSQELTKSDRPELAGAKVIVSGGRGLKSGDNF
KLLYDLADKFGAAVGASRAAVDAGFVPNDLQIGQTGKIVAPELYIAVGIS
GAIQHLAGMKDSKTIVAINKDPEAPIFQVADIGIVADLFKAVPELTGKL*

GH09945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
wal-PB 330 CG8996-PB 1..330 20..349 1621 100 Plus
wal-PA 330 CG8996-PA 1..330 20..349 1621 100 Plus

GH09945.pep Sequence

Translation from 59 to 1051

> GH09945.pep
MFASNTRNLMRSSILQRCKSTLVVAEHNNEVLNPITLNTISAAKKIGGDV
TVLVAGTKCGPASEALSKVDGVTKVLVAENAAFNGFTAESLTPLVLAAQS
QFKFTHILAGASAFGKNVLPRVAAKLDVSPISEIIDVKSDDTFVRTIYAG
NAILTLKSKDAVKVITVRSTNFPPAATSGGSGAVEQAPAGDFASSLSEFV
SQELTKSDRPELAGAKVIVSGGRGLKSGDNFKLLYDLADKFGAAVGASRA
AVDAGFVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
KDPEAPIFQVADIGIVADLFKAVPELTGKL*

GH09945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13409-PA 330 GF13409-PA 1..330 1..330 1629 95.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22634-PA 330 GG22634-PA 1..330 1..330 1685 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22900-PA 330 GH22900-PA 1..330 1..330 1606 93.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
wal-PB 330 CG8996-PB 1..330 1..330 1621 100 Plus
wal-PA 330 CG8996-PA 1..330 1..330 1621 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18385-PA 330 GI18385-PA 1..330 1..330 1611 93.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10254-PA 330 GL10254-PA 1..330 1..330 1616 94.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21463-PB 330 GA21463-PB 1..330 1..330 1616 94.2 Plus
Dpse\GA21463-PA 330 GA21463-PA 1..330 1..330 1616 94.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20413-PA 274 GM20413-PA 160..274 216..330 581 98.3 Plus
Dsec\GM20413-PA 274 GM20413-PA 1..111 1..111 557 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25889-PA 330 GD25889-PA 1..330 1..330 1677 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21462-PA 330 GJ21462-PA 1..330 1..330 1614 93.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17923-PA 330 GK17923-PA 1..330 1..330 1622 95.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\wal-PA 330 GE13505-PA 1..330 1..330 1677 98.8 Plus