BDGP Sequence Production Resources |
Search the DGRC for GH10050
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 100 |
Well: | 50 |
Vector: | pOT2 |
Associated Gene/Transcript | cpa-RA |
Protein status: | GH10050.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1915 |
Gene | Date | Evidence |
---|---|---|
CG10540 | 2001-01-01 | Release 2 assignment |
CG10540 | 2001-11-09 | Blastp of sequenced clone |
CG10540 | 2003-01-01 | Sim4 clustering to Release 3 |
cpa | 2008-04-29 | Release 5.5 accounting |
cpa | 2008-08-15 | Release 5.9 accounting |
cpa | 2008-12-18 | 5.12 accounting |
1915 bp (1915 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069084
> GH10050.complete TGAATCGAATCGTCATCGTCTTGGCCCATTAATTGCGGAGAAAAAAGATT GCAGCGCCGAAAAAACGGTCAAGGAAGAGTTCCAGCGACACCGCAACTTC CAACCACTCCACAAGAAGATCCCGTCGAAAGGTAGAACCCTAGGAACCGG AGGGGAAACCAGACCAAACCAAACAACCGCCCAGCCCCGATTTCGTGAAT CACCAGTGGAACTATGGAGCAGACACCGATCACCGATGCGGAGAAGGTGC GCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAACGAA GTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAAGGA TGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTCCGG TTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAACGAT CTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAAATA CGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAGATG CCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCCTAC ACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGCGCA GGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCCAGC CGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACCTTC CAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCAGGT GCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGTGCC GCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTGATC CGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGAGAA CTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGTTGC CCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGCATT GGCAAGGAACTGAAGACGCAATAAGACCAGGAGGTGCAAGCGGAAGAGGA GCGGACACAGTCGACAAAGCGGCCCAATAGTCTTCCACTTGCCATGGCCA AGCGAGCATAGGAACCGATCACCAGCATTAACACCACAGCATCCGAAACG AAGTAGCAGGAATACGAGAAACGAGGGCGGCCAGGTGCAGGTGCCTGCCG AAAAAGCAAATGTCTGTAATTGGCTATATACATACGAACATATACCTACT TATATATATATATACGGCCTGTATTTATACTGTGTTATACAACGACGAAA GTGCGTAAACATAACTACACATATATCGAGTACGATCGGAGACGATTTGA TTGCAAGGATTTGGATGACTTTAGCCTGACGGTGAACGATGCACTGCCGC CTCGTCTACGTCACGATCGCCACCAATTGTCGCCTTTATCGTTTAAGAAG AGCATTAAACGCGGATTTTATCATGTCCTCTGACCTATGTATTATTCTAA TTTTAAACGAATCAAGCTCGAGATCTGCGCTCTCGATGAGCCAGTCAATT CTTCGTGTCTTTGAAGACCAACCAGCCGACTCTCGACTATTTTAAGTGGT ATCATTAGGAGCACTCATTCAAGTTTTTCGCTTTCCCGATTGTTCACAAA CCAACCACCTAGTATGAGCATGAATAATAACTATGCTAAACCACTGATCA TTTTTGCCAGCTCTCCATTGACAAACAATAACTAAAGACTTTGATTTTAT AAAAACAATAAATTTGTAATTAAAATAACATAACTATAAAACATTTAAGA TTGCTTGAATTAGTCAAATTTAAAGAGAATAAACTAATTGAATCGGAAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16945044..16946316 | 624..1896 | 6215 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 16944242..16944696 | 1..455 | 2215 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 16944816..16944988 | 454..626 | 805 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21058611..21059884 | 624..1897 | 6370 | 100 | Plus |
2R | 25286936 | 2R | 21057809..21058263 | 1..455 | 2275 | 100 | Plus |
2R | 25286936 | 2R | 21058383..21058555 | 454..626 | 865 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21059810..21061083 | 624..1897 | 6370 | 100 | Plus |
2R | 25260384 | 2R | 21059008..21059462 | 1..455 | 2275 | 100 | Plus |
2R | 25260384 | 2R | 21059582..21059754 | 454..626 | 865 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 243..334 | 1797..1886 | 122 | 60.9 | Plus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2200..2252 | 536..587 | 118 | 74.1 | Plus |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1937..2033 | 1874..1777 | 117 | 61.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16944242..16944695 | 1..454 | 99 | -> | Plus |
chr2R | 16944817..16944986 | 455..624 | 97 | -> | Plus |
chr2R | 16945045..16946316 | 625..1896 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 1..861 | 214..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 1..861 | 214..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 1..861 | 214..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 1..861 | 214..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 1..861 | 214..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 19..1914 | 1..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 39..1934 | 1..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 23..1918 | 1..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 19..1914 | 1..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cpa-RA | 23..1918 | 1..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21057809..21058262 | 1..454 | 100 | -> | Plus |
2R | 21058384..21058553 | 455..624 | 100 | -> | Plus |
2R | 21058612..21059883 | 625..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21057809..21058262 | 1..454 | 100 | -> | Plus |
2R | 21058384..21058553 | 455..624 | 100 | -> | Plus |
2R | 21058612..21059883 | 625..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21057809..21058262 | 1..454 | 100 | -> | Plus |
2R | 21058384..21058553 | 455..624 | 100 | -> | Plus |
2R | 21058612..21059883 | 625..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16945314..16945767 | 1..454 | 100 | -> | Plus |
arm_2R | 16945889..16946058 | 455..624 | 100 | -> | Plus |
arm_2R | 16946117..16947388 | 625..1896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21059008..21059461 | 1..454 | 100 | -> | Plus |
2R | 21059583..21059752 | 455..624 | 100 | -> | Plus |
2R | 21059811..21061082 | 625..1896 | 100 | Plus |
Translation from 213 to 1073
> GH10050.hyp MEQTPITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASH AFAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLR KEASDYQDVEADATAEPWRAALDLETLAYTASHYRHGVSSVFGKAQGNQI TLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGTAELKGVLKVQVHYYE DGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTM SDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cpa-PA | 286 | CG10540-PA | 1..286 | 1..286 | 1500 | 100 | Plus |
Translation from 213 to 1073
> GH10050.pep MEQTPITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASH AFAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLR KEASDYQDVEADATAEPWRAALDLETLAYTASHYRHGVSSVFGKAQGNQI TLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGTAELKGVLKVQVHYYE DGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTM SDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11927-PA | 286 | GF11927-PA | 1..286 | 1..286 | 1508 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22079-PA | 286 | GG22079-PA | 1..286 | 1..286 | 1540 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20526-PA | 286 | GH20526-PA | 1..286 | 1..286 | 1390 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cpa-PA | 286 | CG10540-PA | 1..286 | 1..286 | 1500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18973-PA | 286 | GI18973-PA | 1..286 | 1..286 | 1430 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10145-PA | 286 | GL10145-PA | 1..286 | 1..286 | 1453 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10384-PA | 286 | GA10384-PA | 1..286 | 1..286 | 1453 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15798-PA | 286 | GM15798-PA | 1..286 | 1..286 | 1547 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11558-PA | 286 | GD11558-PA | 1..286 | 1..286 | 1547 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22434-PA | 286 | GJ22434-PA | 1..286 | 1..286 | 1464 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23266-PA | 287 | GK23266-PA | 7..287 | 6..286 | 1449 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12160-PA | 286 | GE12160-PA | 1..286 | 1..286 | 1540 | 99 | Plus |