Clone GH10083 Report

Search the DGRC for GH10083

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:100
Well:83
Vector:pOT2
Associated Gene/TranscriptCG3823-RA
Protein status:GH10083.pep: gold
Preliminary Size:4678
Sequenced Size:1285

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3823 2002-01-01 Sim4 clustering to Release 2
CG3823 2002-04-22 Blastp of sequenced clone
CG3823 2003-01-01 Sim4 clustering to Release 3
CG3823 2008-04-29 Release 5.5 accounting
CG3823 2008-08-15 Release 5.9 accounting
CG3823 2008-12-18 5.12 accounting

Clone Sequence Records

GH10083.complete Sequence

1285 bp (1285 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113341

> GH10083.complete
ATTAGCGTCGCACAGACGCGGTGTCTCGCTCAAGTGTTCCTTGCTCGCTC
CATCTGCTGTCTCGCTCCCTCGCGGAAGTCCGATAGTTTCGATAGCTCGT
CCCTGTTTGGCACAACGGTAAACGTATCGAAATGGTCCACCTAAATGAGA
AAGCGGAGGATCAGCTGATGACCACAAGGATTTCGGATTTGCAGGATTGG
CTGCAGGCGCAGCCACAGTTGCCGCAAAATATATCCCGATTGCTTCTGCG
CCGCTTTCTGCACACGACGCGGGGTGATCTATCCGCCGCCCAGCGACTCT
TGGAACTGAATTACGGACTGCGTAACAAACATGCACACATCTTCATCGAT
CGCGATCCGTTGGATGCCAGTTCCCAGCAGCTACTGCAAGTCGCAGATCT
GGTGCCGTTGCCCGGCTTGACCCCGGAGAACAACAAGCTGCTCTTTTACC
GCCTCATCGACTTCGATGCGGACAAGTTCAACTTTACGGCTGCCATCAAG
GTCTTTTTCATGGTGGCCGACTGTCGATTTGCGACGGAGAACGAGGAGCG
TTTGTCGGACGGCGAGATACCAGTTTTCGACATGGCTGGCTATACGCTGC
GCCACCTGACCAAAACCGCACTGGGCGCCCTGCGTGTCTACATGAAGTTC
GTCCAGGAGGCACATCCCGTACGGCTCAAGGAGATCCACGTGCTCAACTG
CCCGTCGTATGTGGACAAGGTGATGGCCGTGGTCAAGCCGTTCATCAAGG
GAGAGGTGTTCAAGCTAATCCATTTCCATTTGCCAAATGCGGACACTCCA
TATCGGCACTTCCCGCGATCCATGTTGCCGGAGGAATACGGCGGGGAGGC
GGGCAAGATGTCCGACCTGAAGCTCCAGTGGATGCAGTTGCTCAAGGAGC
AGAGGGATTATCTGATGGATACGGAAAACTGGCAAATAAACAAAATCAAA
AAGAATGGCCAACGAAAGTCAAGTGATTCCGGAGTCACAGAAGGTCTACG
TTCCCTCGAAATTGATTAGTCGCCGTGCGCACAACTGTACCTTAATTTTT
TGAGCCTTCAGCGATTTTTACATATCTTAAACTTTTTACCCTTCAAGTGT
ACTGCAAGTGTTATCCAATTGTGGTCAAGACACTTTGGCCAAATTGTGGT
GAATGTGAAAATCGGATTAGGCTCGTCTATCTATTGTATTTTTGCTTTGT
TCCCGTTTGTTTTCCCAGCTGGGCTTGGGTCTATGTAAATATATATATAT
TATATTATATTCTTAACAAAAAAAAAAAAAAAAAA

GH10083.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3823-RA 1350 CG3823-RA 82..1349 1..1268 6340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6198064..6198494 475..905 2095 99.1 Plus
chrX 22417052 chrX 6198581..6198941 903..1267 1700 98.4 Plus
chrX 22417052 chrX 6196190..6196423 1..234 1170 100 Plus
chrX 22417052 chrX 6196917..6197076 235..394 800 100 Plus
chrX 22417052 chrX 6197884..6197965 395..476 410 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6305864..6306294 475..905 2155 100 Plus
X 23542271 X 6306381..6306746 903..1268 1830 100 Plus
X 23542271 X 6303990..6304223 1..234 1170 100 Plus
X 23542271 X 6304717..6304876 235..394 800 100 Plus
X 23542271 X 6305684..6305765 395..476 410 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6313962..6314392 475..905 2155 100 Plus
X 23527363 X 6314479..6314844 903..1268 1830 100 Plus
X 23527363 X 6312088..6312321 1..234 1170 100 Plus
X 23527363 X 6312815..6312974 235..394 800 100 Plus
X 23527363 X 6313782..6313863 395..476 410 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:04:34 has no hits.

GH10083.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:05:11 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6196917..6197076 235..394 100 -> Plus
chrX 6197884..6197965 395..476 100 -> Plus
chrX 6196190..6196423 1..234 100 -> Plus
chrX 6198066..6198493 477..904 99 -> Plus
chrX 6198583..6198910 905..1232 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:09 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..888 132..1019 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:36 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..888 132..1019 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:55 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..888 132..1019 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:55 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..888 132..1019 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:43 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..888 132..1019 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:38:59 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..1267 1..1267 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:35 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..1267 1..1267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:55 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 16..1282 1..1267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:55 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 1..1267 1..1267 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:43 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3823-RA 16..1282 1..1267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:05:11 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
X 6306383..6306745 905..1267 100   Plus
X 6303990..6304223 1..234 100 -> Plus
X 6304717..6304876 235..394 100 -> Plus
X 6305684..6305765 395..476 100 -> Plus
X 6305866..6306293 477..904 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:05:11 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
X 6306383..6306745 905..1267 100   Plus
X 6303990..6304223 1..234 100 -> Plus
X 6304717..6304876 235..394 100 -> Plus
X 6305684..6305765 395..476 100 -> Plus
X 6305866..6306293 477..904 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:05:11 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
X 6306383..6306745 905..1267 100   Plus
X 6303990..6304223 1..234 100 -> Plus
X 6304717..6304876 235..394 100 -> Plus
X 6305684..6305765 395..476 100 -> Plus
X 6305866..6306293 477..904 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:55 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6198750..6198909 235..394 100 -> Plus
arm_X 6199717..6199798 395..476 100 -> Plus
arm_X 6198023..6198256 1..234 100 -> Plus
arm_X 6199899..6200326 477..904 100 -> Plus
arm_X 6200416..6200778 905..1267 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:56 Download gff for GH10083.complete
Subject Subject Range Query Range Percent Splice Strand
X 6313782..6313863 395..476 100 -> Plus
X 6312088..6312321 1..234 100 -> Plus
X 6312815..6312974 235..394 100 -> Plus
X 6313964..6314391 477..904 100 -> Plus
X 6314481..6314843 905..1267 100   Plus

GH10083.hyp Sequence

Translation from 131 to 1018

> GH10083.hyp
MVHLNEKAEDQLMTTRISDLQDWLQAQPQLPQNISRLLLRRFLHTTRGDL
SAAQRLLELNYGLRNKHAHIFIDRDPLDASSQQLLQVADLVPLPGLTPEN
NKLLFYRLIDFDADKFNFTAAIKVFFMVADCRFATENEERLSDGEIPVFD
MAGYTLRHLTKTALGALRVYMKFVQEAHPVRLKEIHVLNCPSYVDKVMAV
VKPFIKGEVFKLIHFHLPNADTPYRHFPRSMLPEEYGGEAGKMSDLKLQW
MQLLKEQRDYLMDTENWQINKIKKNGQRKSSDSGVTEGLRSLEID*

GH10083.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3823-PA 295 CG3823-PA 1..295 1..295 1536 100 Plus
CG3191-PC 309 CG3191-PC 38..302 17..277 684 46.8 Plus
CG3191-PA 309 CG3191-PA 38..302 17..277 684 46.8 Plus
CG3091-PC 303 CG3091-PC 25..292 16..269 589 39.9 Plus
CG3091-PA 303 CG3091-PA 25..292 16..269 589 39.9 Plus

GH10083.pep Sequence

Translation from 131 to 1018

> GH10083.pep
MVHLNEKAEDQLMTTRISDLQDWLQAQPQLPQNISRLLLRRFLHTTRGDL
SAAQRLLELNYGLRNKHAHIFIDRDPLDASSQQLLQVADLVPLPGLTPEN
NKLLFYRLIDFDADKFNFTAAIKVFFMVADCRFATENEERLSDGEIPVFD
MAGYTLRHLTKTALGALRVYMKFVQEAHPVRLKEIHVLNCPSYVDKVMAV
VKPFIKGEVFKLIHFHLPNADTPYRHFPRSMLPEEYGGEAGKMSDLKLQW
MQLLKEQRDYLMDTENWQINKIKKNGQRKSSDSGVTEGLRSLEID*

GH10083.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20915-PA 292 GF20915-PA 1..292 1..295 1323 81.4 Plus
Dana\GF21968-PA 304 GF21968-PA 24..297 8..276 719 48.2 Plus
Dana\GF21967-PA 300 GF21967-PA 21..289 14..269 617 41.3 Plus
Dana\GF17713-PA 308 GF17713-PA 34..308 20..295 392 32 Plus
Dana\GF23257-PA 298 GF23257-PA 15..298 11..295 351 27.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19584-PA 295 GG19584-PA 1..295 1..295 1534 96.3 Plus
Dere\GG12633-PA 309 GG12633-PA 38..302 17..277 694 47.2 Plus
Dere\GG12632-PA 305 GG12632-PA 25..300 14..275 611 39.5 Plus
Dere\GG11035-PA 308 GG11035-PA 34..308 20..295 393 32 Plus
Dere\GG11860-PA 298 GG11860-PA 26..298 22..295 340 27.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24053-PA 295 GH24053-PA 1..295 1..295 1217 76.8 Plus
Dgri\GH12310-PA 288 GH12310-PA 4..282 5..278 692 46.6 Plus
Dgri\GH12309-PA 313 GH12309-PA 23..308 11..275 622 40.2 Plus
Dgri\GH22617-PA 308 GH22617-PA 34..308 20..295 388 32 Plus
Dgri\GH18936-PA 298 GH18936-PA 15..298 11..295 360 27.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3823-PA 295 CG3823-PA 1..295 1..295 1536 100 Plus
CG3191-PC 309 CG3191-PC 38..302 17..277 684 46.8 Plus
CG3191-PA 309 CG3191-PA 38..302 17..277 684 46.8 Plus
CG3091-PC 303 CG3091-PC 25..292 16..269 589 39.9 Plus
CG3091-PA 303 CG3091-PA 25..292 16..269 589 39.9 Plus
CG2663-PC 308 CG2663-PC 34..308 20..295 384 32 Plus
CG2663-PA 308 CG2663-PA 34..308 20..295 384 32 Plus
CG11550-PA 298 CG11550-PA 26..298 22..295 340 26.7 Plus
CG33966-PA 310 CG33966-PA 30..310 17..295 253 23.4 Plus
CG12926-PA 313 CG12926-PA 16..313 4..295 248 24.3 Plus
CG10657-PA 334 CG10657-PA 46..334 9..295 238 23.9 Plus
CG10300-PA 311 CG10300-PA 31..311 17..295 222 24.3 Plus
CG33514-PA 311 CG33514-PA 21..311 7..295 215 21.9 Plus
CG31636-PB 313 CG31636-PB 26..313 13..295 213 25.9 Plus
CG31636-PA 313 CG31636-PA 26..313 13..295 213 25.9 Plus
CG33965-PA 317 CG33965-PA 35..317 17..295 213 25.2 Plus
CG30339-PA 308 CG30339-PA 33..308 20..295 212 24 Plus
pinta-PB 273 CG13848-PB 18..273 9..273 186 22.9 Plus
pinta-PA 273 CG13848-PA 18..273 9..273 186 22.9 Plus
CG5958-PA 294 CG5958-PA 160..286 138..267 156 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21476-PA 305 GI21476-PA 1..305 1..295 1178 71.7 Plus
Dmoj\GI21454-PA 288 GI21454-PA 4..282 5..277 716 47.3 Plus
Dmoj\GI21451-PA 297 GI21451-PA 1..292 1..275 608 37.3 Plus
Dmoj\GI23644-PA 308 GI23644-PA 34..308 20..295 387 31.3 Plus
Dmoj\GI24455-PA 298 GI24455-PA 15..298 11..295 337 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26848-PA 3514 GL26848-PA 3249..3514 37..295 1182 81.6 Plus
Dper\GL13391-PA 287 GL13391-PA 15..279 17..276 706 49.1 Plus
Dper\GL13389-PA 295 GL13389-PA 13..290 10..275 646 41 Plus
Dper\GL22169-PA 308 GL22169-PA 34..308 20..295 381 32.6 Plus
Dper\GL23532-PA 298 GL23532-PA 15..298 11..295 358 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17712-PA 303 GA17712-PA 1..303 1..295 1276 78.9 Plus
Dpse\GA22853-PA 287 GA22853-PA 15..279 17..276 704 49.1 Plus
Dpse\GA22852-PA 295 GA22852-PA 13..290 10..275 646 41 Plus
Dpse\GA15415-PA 308 GA15415-PA 34..308 20..295 381 32.6 Plus
Dpse\GA11062-PA 298 GA11062-PA 15..298 11..295 358 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12480-PA 295 GM12480-PA 1..295 1..295 1568 98.6 Plus
Dsec\GM18900-PA 309 GM18900-PA 38..302 17..277 707 47.9 Plus
Dsec\GM18899-PA 303 GM18899-PA 22..298 13..275 604 38.6 Plus
Dsec\GM10638-PA 308 GM10638-PA 34..308 20..295 391 32 Plus
Dsec\GM16424-PA 298 GM16424-PA 26..298 22..295 344 27.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16379-PA 303 GD16379-PA 23..298 14..275 611 39.1 Plus
Dsim\GD19620-PA 308 GD19620-PA 34..308 20..295 391 32 Plus
Dsim\GD16370-PA 298 GD16370-PA 24..298 20..295 345 27.6 Plus
Dsim\GD14567-PA 77 GD14567-PA 17..77 28..88 274 88.5 Plus
Dsim\GD10061-PA 308 GD10061-PA 33..308 20..295 231 25.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16499-PA 295 GJ16499-PA 1..295 1..295 1220 75.4 Plus
Dvir\GJ16475-PA 288 GJ16475-PA 4..282 5..277 727 48 Plus
Dvir\GJ16473-PA 282 GJ16473-PA 2..277 17..275 626 40.6 Plus
Dvir\GJ24720-PA 307 GJ24720-PA 33..307 20..295 394 31.7 Plus
Dvir\GJ24121-PA 298 GJ24121-PA 15..298 11..295 332 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19881-PA 298 GK19881-PA 1..298 1..295 1266 78.6 Plus
Dwil\GK16332-PA 291 GK16332-PA 14..286 13..280 744 49.8 Plus
Dwil\GK16331-PA 296 GK16331-PA 5..284 3..268 652 40 Plus
Dwil\GK22841-PA 306 GK22841-PA 32..306 20..295 391 31.7 Plus
Dwil\GK10975-PA 298 GK10975-PA 7..298 6..295 340 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16743-PA 295 GE16743-PA 1..295 1..295 1527 95.6 Plus
Dyak\GE16962-PA 309 GE16962-PA 38..302 17..277 704 47.9 Plus
Dyak\GE16961-PA 306 GE16961-PA 26..301 14..275 613 39.5 Plus
Dyak\GE25285-PA 308 GE25285-PA 34..308 20..295 391 32 Plus
Dyak\GE23308-PA 298 GE23308-PA 26..298 22..295 335 26.7 Plus