Clone GH10162 Report

Search the DGRC for GH10162

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:101
Well:62
Vector:pOT2
Associated Gene/TranscriptCG3295-RA
Protein status:GH10162.pep: gold
Sequenced Size:1861

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3295 2001-01-01 Release 2 assignment
CG3295 2002-06-07 Blastp of sequenced clone
CG3295 2003-01-01 Sim4 clustering to Release 3
CG3295 2008-04-29 Release 5.5 accounting
CG3295 2008-08-15 Release 5.9 accounting
CG3295 2008-12-18 5.12 accounting

Clone Sequence Records

GH10162.complete Sequence

1861 bp (1861 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119495

> GH10162.complete
AGTGGTCCACCCAGCTCCAATGTTTTCGTCTTCTTTGTGTTATAAAATTA
ACAATTTATAAATACGCATTTTCCGCTGGACCACCGAATATCGTCGTGAC
TTTGAAGAATCACAGTGCTATCAATCCTCGAAAGCAAAAGGTTGTAAAAT
CGAAAGTGAACGCGCGCCTGGCGTGACTGGTTTCTAGGCTTTCACCCCAC
GAAACTGGAGCTAACAATGGACAGCGAGTCGTTGGCCTGTTCGTCGGTGG
AGAAGGACCTGACCCGAGTGGTCAGCAAACTGGAGCAGCTTCACGAGAAC
GCAGAGGCGGACATCGGAGATATAGCCACACAGATGTCGGAGCTGGTAGA
GGTTCTCAGCAGGGCGGAGCAGCTGGTGACCACTCTGAACTCGAGCACCC
AGGTGTCCCAGGACGATCCCATGGGCGATGCGGTGAGCATGCAGGTGGAG
ACGGAACCGACGGCACCACAACGCCTAACCGAGCGCCAAGTGGAGAGCGT
CCGGAATGCTCTCGCCAGGTGCCACGAGCGCGTGCAAAAACTGTCCACGG
AGCACCGCGATCTGCACGGCTCCATTTCGAAGATCGGCAAGGCCATTGAC
CGCAACTTTAGCGCCGACTTCTCGTCCACCATGCGAGTGGACGTGCTGCA
GGACGAGGAGAACCTGATGTTGCTGAACAAGGCCATTGCCAAGCATTATT
GTCGCCAGGGCATGGACGATGTGGCTCGCACGCTAATCCGCGAGTGCAAG
ATGTCGCCGGAGCATGCCCAGGATGTGTTCGACTCGGAGCGCGAGTTTGC
CGACATCTACGGCATTTGGGTGAAGATCCAAAAGCGGGATCTGACTGACG
CCCTCAAGTGGGCAAAGATGTACTCCCAGCAGCTGAGTGACCGCCACTCG
CTCATAGAGTTCCGGCTGCACCGCATGCGTTTCATGCAGCTGGTCTCCTA
CGGATTGGACTCGCAGCGCGAGGCCATCTCCTACGCTCGACTGAACTTCA
AGAAGTTTGCTGTGCGCTATGAGCACGAAATAGCCAACTTGATGGCCAGC
TTTATATATCTGCCCAGTGGACTGGAGAACTCGCCTTACAAGCACTTCTT
GGGCCAGGAGAAGTGGACCGAACTGTCGTTCATATTCCTCAAAGACGCAT
GCCAACTGCTAGGCATTAGCAAGAACTCCGCCCTGTCTGTTGTGGTCAAT
GCCGGATGCACTGCCCTGCCCGCCTTGCTCAATATCAAGCAGGTGATGCA
GTCGCGCCAAGTCCTTGGCATGTGGAACGGCTGCGACGAGTTGCCCATTG
AGATCGATCTGCAGCCGGAATTCCGATTCCACTCGATCTTTGCCTGCCCC
ATATTGCGCCAGCAGACTTCCGAGGACAATCCGCCGAAGAAGTTGACCTG
CGGTCATGTCATATCCAACGACGCCCTGCACAAGCTGAGTGTTGGCCACA
TACTGAAGTGCCCCTACTGCCCCGTGGAGCAGAATGCCGAGGAGGCTGTT
CGCATCTACTTTTAAGCCACATCTATGTATTCACCTTATGATAATCACCA
CTGCTTATATGACCAGGCTCAGGCGGTTCGAGGACTGGTGTTGGTTGGCC
GGCTTTCCTTAACAAAACGTAACCATTTTAAGATAGCTTGCTTAGATTCA
TGTTTTTAGACAAATTCGCAGAGCGGAATCGAACTGCCTGGGCCGTCTGT
TTTGCGTGTGTCCCACTTCCTAACAAACGATTTAGATTTAAAATTATATA
TACTGTGTATTTAAAACAAACGACGAAAGTGTTTTTATGTAGAATCCATG
TTTAATTAAATACAAATCGTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GH10162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3295-RA 1853 CG3295-RA 31..1853 1..1823 9115 100 Plus
CG9346-RA 3034 CG9346-RA 2982..3034 1825..1773 265 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16902024..16903846 1823..1 9085 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:41:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21015592..21017416 1825..1 9125 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21016791..21018615 1825..1 9125 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:16:34 has no hits.

GH10162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:17:18 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16902024..16903846 1..1823 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:18 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 1..1299 217..1515 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:29:08 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 1..1299 217..1515 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:26:39 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 1..1299 217..1515 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:27 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 1..1299 217..1515 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:19:42 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 1..1299 217..1515 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:58:19 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 31..1853 1..1823 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:29:08 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 31..1853 1..1823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:39 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 31..1853 1..1823 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:27 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 31..1853 1..1823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:19:42 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3295-RA 31..1853 1..1823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:18 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21015594..21017416 1..1823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:18 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21015594..21017416 1..1823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:18 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21015594..21017416 1..1823 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:39 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16903099..16904921 1..1823 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:01 Download gff for GH10162.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21016793..21018615 1..1823 100   Minus

GH10162.pep Sequence

Translation from 216 to 1514

> GH10162.pep
MDSESLACSSVEKDLTRVVSKLEQLHENAEADIGDIATQMSELVEVLSRA
EQLVTTLNSSTQVSQDDPMGDAVSMQVETEPTAPQRLTERQVESVRNALA
RCHERVQKLSTEHRDLHGSISKIGKAIDRNFSADFSSTMRVDVLQDEENL
MLLNKAIAKHYCRQGMDDVARTLIRECKMSPEHAQDVFDSEREFADIYGI
WVKIQKRDLTDALKWAKMYSQQLSDRHSLIEFRLHRMRFMQLVSYGLDSQ
REAISYARLNFKKFAVRYEHEIANLMASFIYLPSGLENSPYKHFLGQEKW
TELSFIFLKDACQLLGISKNSALSVVVNAGCTALPALLNIKQVMQSRQVL
GMWNGCDELPIEIDLQPEFRFHSIFACPILRQQTSEDNPPKKLTCGHVIS
NDALHKLSVGHILKCPYCPVEQNAEEAVRIYF*

GH10162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12988-PA 437 GF12988-PA 1..437 1..432 2138 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20812-PA 431 GG20812-PA 3..431 4..432 2274 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21373-PA 438 GH21373-PA 5..438 7..432 1890 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3295-PA 432 CG3295-PA 1..432 1..432 2224 100 Plus
CG31357-PA 394 CG31357-PA 40..296 73..334 158 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18549-PA 437 GI18549-PA 1..437 1..432 1900 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10188-PA 437 GL10188-PA 1..437 1..432 2048 86.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17211-PA 437 GA17211-PA 1..437 1..432 2048 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15759-PA 432 GM15759-PA 1..432 1..432 2304 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25234-PA 432 GD25234-PA 1..432 1..432 2314 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20343-PA 437 GJ20343-PA 1..437 1..432 1934 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23249-PA 438 GK23249-PA 3..438 2..432 2003 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13752-PA 432 GE13752-PA 1..432 1..432 2286 97.9 Plus

GH10162.hyp Sequence

Translation from 216 to 1514

> GH10162.hyp
MDSESLACSSVEKDLTRVVSKLEQLHENAEADIGDIATQMSELVEVLSRA
EQLVTTLNSSTQVSQDDPMGDAVSMQVETEPTAPQRLTERQVESVRNALA
RCHERVQKLSTEHRDLHGSISKIGKAIDRNFSADFSSTMRVDVLQDEENL
MLLNKAIAKHYCRQGMDDVARTLIRECKMSPEHAQDVFDSEREFADIYGI
WVKIQKRDLTDALKWAKMYSQQLSDRHSLIEFRLHRMRFMQLVSYGLDSQ
REAISYARLNFKKFAVRYEHEIANLMASFIYLPSGLENSPYKHFLGQEKW
TELSFIFLKDACQLLGISKNSALSVVVNAGCTALPALLNIKQVMQSRQVL
GMWNGCDELPIEIDLQPEFRFHSIFACPILRQQTSEDNPPKKLTCGHVIS
NDALHKLSVGHILKCPYCPVEQNAEEAVRIYF*

GH10162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3295-PA 432 CG3295-PA 1..432 1..432 2224 100 Plus
CG31357-PA 394 CG31357-PA 40..296 73..334 158 23.3 Plus