Clone GH10266 Report

Search the DGRC for GH10266

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:102
Well:66
Vector:pOT2
Associated Gene/TranscriptAmy-p-RA
Protein status:GH10266.pep: gold
Preliminary Size:3700
Sequenced Size:1600

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18730 2001-01-01 Release 2 assignment
CG18730 2001-07-04 Blastp of sequenced clone
CG18730 2003-01-01 Sim4 clustering to Release 3
Amy-p 2008-04-29 Release 5.5 accounting
Amy-p 2008-08-15 Release 5.9 accounting
Amy-p 2008-12-18 5.12 accounting

Clone Sequence Records

GH10266.complete Sequence

1600 bp (1600 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051425

> GH10266.complete
AACTTCCATCTGGAATTACCATGTTTCTGGCCAAGAGCATAGTGTGCCTC
GCCCTCCTGGCGGTGGCTAACGCCCAATTCGACACCAACTACGCCTCCGG
TCGTAGTGGAATGGTCCACCTCTTCGAGTGGAAGTGGGACGACATCGCTG
CCGAGTGTGAGAACTTCCTGGGACCCAATGGCTACGCCGGTGTTCAGGTC
TCCCCTGTGAACGAGAACGCCGTCAAGGACAGCCGCCCCTGGTGGGAACG
TTACCAACCCATCTCCTACAAGCTGGAGACCCGCTCCGGAAACGAGGAGC
AGTTCGCCAGCATGGTCAAGCGCTGCAACGCCGTCGGAGTGCGCACCTAC
GTGGACGTGGTCTTCAACCACATGGCCGCCGACGGAGGCACCTACGGCAC
TGGCGGCAGCACCGCCAGCCCCAGCAGCAAGAGCTATCCCGGAGTGCCCT
ACTCCTCGCTGGACTTCAACCCGACCTGCGCCATCAGCAACTACAACGAC
GCCAACGAGGTGCGCAACTGCGAGCTGGTCGGTCTGCGCGACCTTAACCA
GGGCAACTCCTACGTGCAGGACAAGGTGGTCGAGTTCCTGGACCATCTGA
TTGATCTCGGCGTGGCCGGATTCCGCGTGGACGCCGCCAAGCACATGTGG
CCCGCCGACCTGGCCGTCATCTATGGCCGCCTCAAGAACCTGAACACCGA
CCACGGCTTCGCCTCGGGATCCAAGGCGTACATCGTCCAGGAGGTCATCG
ACATGGGCGGCGAGGCCATCAGCAAGTCCGAGTACACCGGACTGGGCGCC
ATCACCGAGTTCCGCCACTCCGACTCCATCGGCAAGGTCTTCCGCGGCAA
GGACCAGCTGCAGTACCTGACCAACTGGGGCACCGCCTGGGGCTTCGCTG
CCTCCGACCGCTCCCTGGTATTCGTCGACAACCACGACAATCAGCGCGGA
CATGGAGCAGGAGGCGCCGACGTTCTGACCTACAAGGTGCCCAAGCAGTA
CAAGATGGCCTCCGCCTTCATGCTGGCGCACCCCTTCGGCACTCCCCGCG
TGATGTCCTCCTTCTCCTTCACGGACACCGATCAGGGCCCGCCCACCACC
GACGGCCACAACATCGCCTCGCCCATCTTCAATAGCGACAACTCCTGCAG
CGGCGGCTGGGTGTGTGAGCACCGCTGGCGCCAGATCTACAACATGGTGG
CCTTCCGAAACACCGTGGGCTTGGACGAGATCCAGAACTGGTGGGACAAC
GGCAGCAACCAGATCTCCTTCAGCCGAGGCAGCCGCGGCTTCGTGGCCTT
CAACAACGACAACTACGACCTGAACAGCTCCCTGCAGACGGGCCTGCCCG
CCGGCACCTACTGCGACGTCATTTCCGGCTCCAAGAGCGGCTCCTCCTGC
ACGGGCAAGACCGTCACCGTCGGATCCGACGGACGGGCTTCCATCTACAT
TGGCAGCTCCGAGGACGATGGAGTGCTGGCCATTCACGTCAACGCCAAGT
TGTAAACAACTGGGGAACATGGCGAACAGCCAGGCAATAAATTGAGATTA
TTAATTGTACGAAATATATATGATGAGATTATAAAAAAAAAAAAAAAAAA

GH10266.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Amy-p-RA 1598 Amy-p-RA 14..1598 1..1585 7925 100 Plus
Amy-d-RA 1621 Amy-d-RA 21..1533 3..1515 7235 98.5 Plus
Amyrel-RA 1595 Amyrel-RA 268..406 240..378 155 74.1 Plus
Amyrel-RA 1595 Amyrel-RA 1260..1329 1238..1307 140 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13005901..13007482 1582..1 7700 99.1 Minus
chr2R 21145070 chr2R 13011981..13013493 3..1515 7235 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17118706..17120290 1585..1 7925 100 Minus
2R 25286936 2R 17124782..17126294 3..1515 7235 98.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17119905..17121489 1585..1 7925 100 Minus
2R 25260384 2R 17125981..17127493 3..1515 7235 98.5 Plus
2R 25260384 2R 16653536..16653674 378..240 155 74.1 Minus
2R 25260384 2R 16652557..16652626 1307..1238 140 80 Minus
Blast to na_te.dros performed on 2019-03-16 00:12:52 has no hits.

GH10266.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:13:34 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13005901..13007482 1..1582 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:27 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 1..1485 21..1505 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:18 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 1..1485 21..1505 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:05 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 1..1485 21..1505 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:37 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 1..1485 21..1505 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:45 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 1..1485 21..1505 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:28:11 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 14..1595 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:18 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 14..1595 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:05 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 14..1595 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:38 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 14..1595 1..1582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:45 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
Amy-p-RA 14..1595 1..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:34 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17118709..17120290 1..1582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:34 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17118709..17120290 1..1582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:34 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17118709..17120290 1..1582 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:05 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13006214..13007795 1..1582 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:33 Download gff for GH10266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17119908..17121489 1..1582 100   Minus

GH10266.hyp Sequence

Translation from 2 to 1504

> GH10266.hyp
LPSGITMFLAKSIVCLALLAVANAQFDTNYASGRSGMVHLFEWKWDDIAA
ECENFLGPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQ
FASMVKRCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPY
SSLDFNPTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLI
DLGVAGFRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVID
MGGEAISKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAA
SDRSLVFVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRV
MSSFSFTDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVA
FRNTVGLDEIQNWWDNGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPA
GTYCDVISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL
*

GH10266.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Amy-p-PB 494 CG18730-PB 1..494 7..500 2644 100 Plus
Amy-p-PA 494 CG18730-PA 1..494 7..500 2644 100 Plus
Amy-d-PA 494 CG17876-PA 1..494 7..500 2631 99.4 Plus
Amyrel-PA 493 CG8221-PA 10..493 14..500 1582 60.5 Plus

GH10266.pep Sequence

Translation from 20 to 1504

> GH10266.pep
MFLAKSIVCLALLAVANAQFDTNYASGRSGMVHLFEWKWDDIAAECENFL
GPNGYAGVQVSPVNENAVKDSRPWWERYQPISYKLETRSGNEEQFASMVK
RCNAVGVRTYVDVVFNHMAADGGTYGTGGSTASPSSKSYPGVPYSSLDFN
PTCAISNYNDANEVRNCELVGLRDLNQGNSYVQDKVVEFLDHLIDLGVAG
FRVDAAKHMWPADLAVIYGRLKNLNTDHGFASGSKAYIVQEVIDMGGEAI
SKSEYTGLGAITEFRHSDSIGKVFRGKDQLQYLTNWGTAWGFAASDRSLV
FVDNHDNQRGHGAGGADVLTYKVPKQYKMASAFMLAHPFGTPRVMSSFSF
TDTDQGPPTTDGHNIASPIFNSDNSCSGGWVCEHRWRQIYNMVAFRNTVG
LDEIQNWWDNGSNQISFSRGSRGFVAFNNDNYDLNSSLQTGLPAGTYCDV
ISGSKSGSSCTGKTVTVGSDGRASIYIGSSEDDGVLAIHVNAKL*

GH10266.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Amy58-PA 494 GF18843-PA 1..494 1..494 2444 93.5 Plus
Dana\Amy35-PA 494 GF18844-PA 1..494 1..494 2440 93.3 Plus
Dana\Amy4N-PA 495 GF13835-PA 4..495 3..494 2439 93.3 Plus
Dana\Amyc1-PA 494 GF12581-PA 1..494 1..494 2161 79.1 Plus
Dana\Amy2E-PA 449 GF18842-PA 1..449 1..494 2130 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Amy-p-PA 494 GG22216-PA 1..494 1..494 2502 95.5 Plus
Dere\Amy-d-PA 494 GG20663-PA 1..494 1..494 2496 95.1 Plus
Dere\Amyrel-PA 493 GG22255-PA 10..493 8..494 1574 59.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21468-PA 538 GH21468-PA 45..538 1..494 2246 83.8 Plus
Dgri\Amyrel-PA 490 GH22708-PA 1..490 2..494 1627 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Amy-p-PB 494 CG18730-PB 1..494 1..494 2644 100 Plus
Amy-p-PA 494 CG18730-PA 1..494 1..494 2644 100 Plus
Amy-d-PA 494 CG17876-PA 1..494 1..494 2631 99.4 Plus
Amyrel-PA 493 CG8221-PA 10..493 8..494 1582 60.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19946-PA 494 GI19946-PA 1..494 1..494 2193 84.2 Plus
Dmoj\GI18495-PA 490 GI18495-PA 1..490 2..494 1618 60 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\Amy4-PA 494 GL20050-PA 1..494 1..494 2359 88.5 Plus
Dper\Amy2-PA 494 GL20058-PA 1..494 1..494 2332 87.7 Plus
Dper\GL11824-PA 448 GL11824-PA 10..448 8..494 1380 53.2 Plus
Dper\GL20056-PA 309 GL20056-PA 1..254 1..254 1236 87.4 Plus
Dper\GL20056-PA 309 GL20056-PA 230..309 417..494 205 67.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Amy2-PA 494 GA24912-PA 1..494 1..494 2362 88.9 Plus
Dpse\Amy1-PA 494 GA24265-PA 1..494 1..494 2362 88.9 Plus
Dpse\Amyrel-PA 494 GA20907-PA 10..494 8..494 1600 59.3 Plus
Dpse\Amy3-PA 262 GA24911-PA 10..262 228..494 1104 82.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Amy-p-PA 485 GM20004-PA 1..485 1..494 2399 93.1 Plus
Dsec\Amy-d-PA 474 GM21759-PA 1..474 1..494 2390 92.5 Plus
Dsec\Amyrel-PA 493 GM20043-PA 4..493 2..494 1592 59.6 Plus
Dsec\GM23222-PA 173 GM23222-PA 1..121 1..121 646 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Amy-d-PA 494 GD11250-PA 1..494 1..494 2607 97.4 Plus
Dsim\Amyrel-PA 493 GD25526-PA 4..493 2..494 1593 59.8 Plus
Dsim\Amy-p-PA 234 GD25494-PA 1..234 1..234 1244 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Amy-PA 494 GJ17794-PA 1..494 1..494 2261 86.6 Plus
Dvir\Amyrel-PA 490 GJ21358-PA 1..490 2..494 1601 59.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21763-PA 494 GK21763-PA 1..494 1..494 2311 87.2 Plus
Dwil\GK21544-PA 494 GK21544-PA 1..494 1..494 2311 87.2 Plus
Dwil\Amyrel-PA 460 GK10730-PA 1..459 1..461 1525 59.8 Plus
Dwil\GK21545-PA 286 GK21545-PA 1..286 209..494 1317 88.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Amy-d-PA 494 GE11648-PA 1..494 1..494 2529 96.4 Plus
Dyak\Amy-p-PA 528 GE14213-PA 1..528 1..494 2469 89.8 Plus
Dyak\Amyrel-PA 493 GE14048-PA 15..493 14..494 1582 60 Plus