Clone GH10272 Report

Search the DGRC for GH10272

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:102
Well:72
Vector:pOT2
Associated Gene/TranscriptCG12736-RA
Protein status:GH10272.pep: gold
Preliminary Size:1604
Sequenced Size:1668

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12736 2001-01-01 Release 2 assignment
CG12736 2003-01-01 Sim4 clustering to Release 3
CG12736 2003-01-15 Blastp of sequenced clone
CG12736 2008-04-29 Release 5.5 accounting
CG12736 2008-08-15 Release 5.9 accounting
CG12736 2008-12-18 5.12 accounting

Clone Sequence Records

GH10272.complete Sequence

1668 bp (1668 high quality bases) assembled on 2003-01-15

GenBank Submission: AY058330

> GH10272.complete
TTAGAATTTATAGCATTTTTTTATATTTATTTCATTAACTTCGGGTAATC
AAAATTTTCGAAGTTATCAGCTCACCTATTCTTGCGCTGTGCAGCACTGG
CCAACAGCTGTTCGTGTTTTGGTTTTCCGCGACGTGCTCGGTGTTACGTG
CTCTGCACCAAGATTACAGACCTGGAGAGGAGAAATGAGCGGACTCCTTC
CGAAGTTGTGGCGCCAATGTGAAGCGGGGCTAGTGCGCCGTATCAGCCAG
GCACTGATTGGACCCGGCGCCAGTCAGAGCCGGTGGACAGGGACCCGTCT
CCTGGCCACCAGTGCGGATAAAAATCCGGCCCCGGGGCTGCGGGAGCTGC
CCCACTGCAATGTGGGCACCATTGGTCACGTTGACCATGGTAAAACGACC
CTGACCGCCGCCATTACCAGAATCCAGTCACAGAAGGGTCTGGCGGAGTA
CCTGTCCTACGACCAGATTGATCGGGCGCCCGAGGAGAAGGCGCGTGGCA
TAACTATAAATGCTTGCCATATTGGGTATTCCACTACAGAACGCACCTAC
GCTCACACGGATTGCCCGGGTCATGCGGACTACATAAAGAACATGATCTC
GGGCGCCTCCCAAATGGATGGCGCCATTCTAGTGGTGGCTGCCACCGATG
GTCAAATGCCCCAGACTCGCGAGCACCTTCTTCTGGCAAAACAAGTGGGC
ATCCAGCGCATCATAGTGTTTATAAACAAGGCCGATTTGGTGGACCAGGA
GGTGCTGGAACTGGTCGAGATCGAGATGCGTGAGATGCTAAGTGATTTCG
GCTTTGATGGCGTGAATAGCCCGGTAATTTGTGGCTCAGCGCTGCTGGCC
CTTCGCGAAGATAAATCGGAGTTCGGGGTTCCGTCAATTGAAAAGCTACT
TGAGCAATGCGACTCTTACATACCAACGCCGCAGCGCGATATCTCGTCCC
CATTTATCCTGCCAATAGACAATGCTTTTACGGTACCCGGAAGGGGAACC
GTGGTCGTGGGAACCATCAAAAGGGGCACCATTCCCCGGAACGCGGATGC
AGACCTACTGGGCTTCAATCAGAACCTGAAGACAAGCATCAGCGACATCC
AGATATTCCGGAAGAGCGTGCCTCAGGCACAGGCTGGCGAGAACGTCGGC
GCACTGCTGCGAGGTATTAAGATATCCGCCGTGGAGCGGGGAATGCTACT
GTGCGCAACCGGCTCCGAGGATATATCCAACCACTTTGAAGGCTCCATGT
ATCTGCTATCGCGGGCCGAGGGTGGTCGTGTCAAGCCCATGCTCTCCAAG
TATATACAGCAGCTCTTCAGCCAGACGTGGAATGTTCCAGCTAGAATTGA
CATAGTTCCAAGTGAGGCTATGCTTATGCCGGGTGAGCATGGCCAGGTGC
GCGTCACGCTGCTGCGGAAAATGGTCATGACTCCGGGCCAAGCCTTCACA
ATTCGCGAGAACGGAGCGACGGTGGCTACCGGTATGGTGACGCAGCGCCT
GCCGTCCCTTGACCTGCCCAAGAACAAGTTATCAAAAGTCTTCGTGGATT
GTTAACGACTCGAGATTGTATTTGTAAAAATTCATAAATTGCTGTTCATT
ACACACGAGTACTTTCTTTCTAATATATAATATTTGTATGTGTTTAGGTA
AAAAAAAAAAAAAAAAAA

GH10272.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1867 CG12736-RA 160..1810 1..1651 8255 100 Plus
didum-RA 6525 didum-RA 6377..6525 1651..1503 745 100 Minus
didum-RC 6549 didum-RC 6401..6549 1651..1503 745 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3396227..3396994 1355..588 3840 100 Minus
chr2R 21145070 chr2R 3397059..3397647 589..1 2945 100 Minus
chr2R 21145070 chr2R 3395879..3396174 1649..1354 1480 100 Minus
chr2R 21145070 chr2R 9395488..9395730 547..789 315 75.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7508875..7509642 1355..588 3840 100 Minus
2R 25286936 2R 7509707..7510295 589..1 2945 100 Minus
2R 25286936 2R 7508525..7508822 1651..1354 1490 100 Minus
2R 25286936 2R 13508181..13508423 547..789 315 75.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7510074..7510841 1355..588 3840 100 Minus
2R 25260384 2R 7510906..7511494 589..1 2945 100 Minus
2R 25260384 2R 7509724..7510021 1651..1354 1490 100 Minus
2R 25260384 2R 13509380..13509564 547..731 310 77.8 Plus
2R 25260384 2R 13509182..13509252 349..419 160 81.6 Plus
Blast to na_te.dros performed on 2019-03-16 19:23:44 has no hits.

GH10272.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:24:27 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3395879..3396172 1356..1649 100 <- Minus
chr2R 3396227..3396992 590..1355 100 <- Minus
chr2R 3397059..3397647 1..589 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:29 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 185..1555 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:57 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 185..1555 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:50 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 185..1555 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:55 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 185..1555 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:07 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 185..1555 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:30 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 160..1808 1..1649 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:57 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 160..1808 1..1649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:50 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 63..1711 1..1649 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:55 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 160..1808 1..1649 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:07 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 63..1711 1..1649 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:27 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7508527..7508820 1356..1649 100 <- Minus
2R 7508875..7509640 590..1355 100 <- Minus
2R 7509707..7510295 1..589 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:27 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7508527..7508820 1356..1649 100 <- Minus
2R 7508875..7509640 590..1355 100 <- Minus
2R 7509707..7510295 1..589 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:27 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7508527..7508820 1356..1649 100 <- Minus
2R 7508875..7509640 590..1355 100 <- Minus
2R 7509707..7510295 1..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:50 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3396032..3396325 1356..1649 100 <- Minus
arm_2R 3396380..3397145 590..1355 100 <- Minus
arm_2R 3397212..3397800 1..589 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:06 Download gff for GH10272.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7509726..7510019 1356..1649 100 <- Minus
2R 7510074..7510839 590..1355 100 <- Minus
2R 7510906..7511494 1..589 100   Minus

GH10272.pep Sequence

Translation from 184 to 1554

> GH10272.pep
MSGLLPKLWRQCEAGLVRRISQALIGPGASQSRWTGTRLLATSADKNPAP
GLRELPHCNVGTIGHVDHGKTTLTAAITRIQSQKGLAEYLSYDQIDRAPE
EKARGITINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILV
VAATDGQMPQTREHLLLAKQVGIQRIIVFINKADLVDQEVLELVEIEMRE
MLSDFGFDGVNSPVICGSALLALREDKSEFGVPSIEKLLEQCDSYIPTPQ
RDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNADADLLGFNQNLKT
SISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGMLLCATGSEDISNH
FEGSMYLLSRAEGGRVKPMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPG
EHGQVRVTLLRKMVMTPGQAFTIRENGATVATGMVTQRLPSLDLPKNKLS
KVFVDC*

GH10272.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13674-PA 456 GF13674-PA 7..456 1..456 2123 87.5 Plus
Dana\GF13698-PA 489 GF13698-PA 78..466 53..442 1183 53.3 Plus
Dana\GF22982-PA 462 GF22982-PA 3..325 53..338 322 28 Plus
Dana\GF13105-PA 463 GF13105-PA 3..325 53..338 301 27.7 Plus
Dana\GF12096-PA 440 GF12096-PA 6..271 59..338 296 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10739-PA 456 GG10739-PA 1..456 1..456 2359 96.1 Plus
Dere\GG20385-PA 489 GG20385-PA 48..466 34..442 1182 50.7 Plus
Dere\GG11826-PA 462 GG11826-PA 3..325 53..338 324 28.4 Plus
Dere\GG20777-PA 512 GG20777-PA 6..275 59..338 305 30.1 Plus
Dere\GG20229-PA 463 GG20229-PA 3..325 53..338 291 27.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19814-PA 462 GH19814-PA 1..462 1..456 2041 82.5 Plus
Dgri\GH13998-PA 462 GH13998-PA 51..439 53..442 1187 53.6 Plus
Dgri\GH18651-PA 462 GH18651-PA 3..325 53..338 322 28.4 Plus
Dgri\GH21181-PA 525 GH21181-PA 7..281 59..338 297 30.9 Plus
Dgri\GH21478-PA 463 GH21478-PA 3..325 53..338 295 27.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
mEFTu2-PA 456 CG12736-PA 1..456 1..456 2334 100 Plus
mEFTu1-PB 489 CG6050-PB 48..466 34..442 1148 51.2 Plus
mEFTu1-PA 489 CG6050-PA 48..466 34..442 1148 51.2 Plus
eEF1alpha2-PD 462 CG1873-PD 3..323 53..336 321 28.1 Plus
eEF1alpha2-PC 462 CG1873-PC 3..323 53..336 321 28.1 Plus
eEF1alpha2-PB 462 CG1873-PB 3..323 53..336 321 28.1 Plus
eEF1alpha2-PA 462 CG1873-PA 3..323 53..336 321 28.1 Plus
eEFSec-PA 511 CG9841-PA 6..275 59..338 306 29.7 Plus
eEF1alpha1-PE 463 CG8280-PE 3..323 53..336 292 26.9 Plus
eEF1alpha1-PD 463 CG8280-PD 3..323 53..336 292 26.9 Plus
eEF1alpha1-PC 463 CG8280-PC 3..323 53..336 292 26.9 Plus
eEF1alpha1-PA 463 CG8280-PA 3..323 53..336 292 26.9 Plus
eRF3-PC 495 CG6382-PC 71..380 57..340 263 28.2 Plus
eRF3-PB 619 CG6382-PB 195..504 57..340 263 28.2 Plus
eRF3-PD 619 CG6382-PD 195..504 57..340 263 28.2 Plus
eRF3-PA 619 CG6382-PA 195..504 57..340 263 28.2 Plus
HBS1-PB 670 CG1898-PB 247..555 57..339 244 27.9 Plus
HBS1-PA 670 CG1898-PA 247..555 57..339 244 27.9 Plus
eIF2gamma-PC 467 CG43665-PC 34..376 59..365 198 26.9 Plus
eIF2gamma-PD 475 CG43665-PD 42..384 59..365 198 26.9 Plus
eIF2gamma-PB 475 CG43665-PB 42..384 59..365 198 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20403-PA 461 GI20403-PA 1..461 1..456 2026 84.2 Plus
Dmoj\GI21331-PA 451 GI21331-PA 40..428 53..442 1188 53.8 Plus
Dmoj\GI23129-PA 462 GI23129-PA 3..325 53..338 322 28 Plus
Dmoj\GI20468-PA 514 GI20468-PA 6..271 59..338 303 30.8 Plus
Dmoj\GI19955-PA 463 GI19955-PA 3..325 53..338 302 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20115-PA 457 GL20115-PA 1..455 1..454 2156 88.6 Plus
Dper\GL17405-PA 488 GL17405-PA 77..465 53..442 1193 53.8 Plus
Dper\GL26171-PA 215 GL26171-PA 77..215 53..191 568 73.4 Plus
Dper\GL23995-PA 462 GL23995-PA 3..325 53..338 320 28 Plus
Dper\GL10091-PA 397 GL10091-PA 3..325 53..338 299 27.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11779-PA 457 GA11779-PA 1..455 1..454 2158 88.6 Plus
Dpse\GA19322-PA 488 GA19322-PA 77..465 53..442 1193 53.8 Plus
Dpse\GA15055-PA 462 GA15055-PA 3..325 53..338 320 28 Plus
Dpse\GA22068-PA 512 GA22068-PA 6..275 59..338 315 31.4 Plus
Dpse\GA20951-PA 463 GA20951-PA 3..325 53..338 300 27.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20785-PA 456 GM20785-PA 1..456 1..456 2386 98 Plus
Dsec\GM16446-PA 462 GM16446-PA 3..325 53..338 324 28.4 Plus
Dsec\GM15722-PA 512 GM15722-PA 6..275 59..338 305 30.4 Plus
Dsec\GM26827-PA 595 GM26827-PA 171..480 57..340 273 28.8 Plus
Dsec\GM14160-PA 670 GM14160-PA 247..555 57..339 240 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15306-PA 299 GD15306-PA 1..299 158..456 1560 98.7 Plus
Dsim\GD10969-PA 275 GD10969-PA 1..252 190..442 611 42.3 Plus
Dsim\GD21598-PA 462 GD21598-PA 3..325 53..338 324 28.4 Plus
Dsim\GD25199-PA 512 GD25199-PA 6..275 59..338 296 29.7 Plus
Dsim\GD10821-PA 461 GD10821-PA 3..323 53..338 294 27.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20075-PA 461 GJ20075-PA 1..461 1..456 2067 84.2 Plus
Dvir\GJ19676-PA 487 GJ19676-PA 76..464 53..442 1183 53.3 Plus
Dvir\GJ22318-PA 516 GJ22318-PA 6..275 59..338 319 30.2 Plus
Dvir\GJ23103-PA 462 GJ23103-PA 3..325 53..338 318 28 Plus
Dvir\GJ17887-PA 463 GJ17887-PA 3..325 53..338 305 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19666-PA 443 GK19666-PA 1..443 1..456 1964 85.1 Plus
Dwil\GK15961-PA 488 GK15961-PA 77..465 53..442 1169 52.6 Plus
Dwil\GK12116-PA 462 GK12116-PA 3..325 53..338 321 28 Plus
Dwil\GK22048-PA 463 GK22048-PA 3..325 53..338 296 27.1 Plus
Dwil\GK15498-PA 640 GK15498-PA 216..525 57..340 267 29.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23915-PA 456 GE23915-PA 1..456 1..456 2361 96.7 Plus
Dyak\GE12547-PA 489 GE12547-PA 78..466 53..442 1182 53.3 Plus
Dyak\GE10959-PA 462 GE10959-PA 3..325 53..338 324 28.4 Plus
Dyak\GE13715-PA 512 GE13715-PA 6..275 59..338 300 29.7 Plus
Dyak\GE12389-PA 463 GE12389-PA 3..325 53..338 294 27.4 Plus

GH10272.hyp Sequence

Translation from 184 to 1554

> GH10272.hyp
MSGLLPKLWRQCEAGLVRRISQALIGPGASQSRWTGTRLLATSADKNPAP
GLRELPHCNVGTIGHVDHGKTTLTAAITRIQSQKGLAEYLSYDQIDRAPE
EKARGITINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILV
VAATDGQMPQTREHLLLAKQVGIQRIIVFINKADLVDQEVLELVEIEMRE
MLSDFGFDGVNSPVICGSALLALREDKSEFGVPSIEKLLEQCDSYIPTPQ
RDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNADADLLGFNQNLKT
SISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGMLLCATGSEDISNH
FEGSMYLLSRAEGGRVKPMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPG
EHGQVRVTLLRKMVMTPGQAFTIRENGATVATGMVTQRLPSLDLPKNKLS
KVFVDC*

GH10272.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 456 CG12736-PA 1..456 1..456 2334 100 Plus
EfTuM-PB 489 CG6050-PB 48..466 34..442 1148 51.2 Plus
EfTuM-PA 489 CG6050-PA 48..466 34..442 1148 51.2 Plus
Ef1alpha100E-PD 462 CG1873-PD 3..323 53..336 321 28.1 Plus
Ef1alpha100E-PC 462 CG1873-PC 3..323 53..336 321 28.1 Plus