Clone GH10333 Report

Search the DGRC for GH10333

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:103
Well:33
Vector:pOT2
Associated Gene/TranscriptNELF-B-RA
Protein status:GH10333.pep: gold
Preliminary Size:2205
Sequenced Size:2207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32721 2000-02-14 Blastp of sequenced clone
CG12152 2001-01-01 Release 2 assignment
CG32721 2003-01-01 Sim4 clustering to Release 3
NELF-B 2008-04-29 Release 5.5 accounting
NELF-B 2008-08-15 Release 5.9 accounting
NELF-B 2008-12-18 5.12 accounting

Clone Sequence Records

GH10333.complete Sequence

2207 bp (2207 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145659

> GH10333.complete
GGGTTCGTGTCTTGTTTTGCTCAATTTGCCGACGAATTGCATGATAATGA
GCACACCGGCGAAAAATAACAATGGAACTGGACTGGAGGACGTGAATATT
CCGGGTCAGGCCTATCTGCGCGAGGCCCTGACCTCCTGCACTGATCCCTT
GAAGGCCATCGAGAGTTTTCAGCTTGAGAATGGTGTATTGCTGCCTTCAC
TGCGCCCCATGTTGCCTTTACTCGATTTGCACGGCGTGCGTCGACTGGAC
TTTCATACCTCGCTGATGGAGGAGCTGCGCGACAAGCTGATAGCTCACAT
CAACGAGATGGGCCAAAAGGAGCCCCGGGAGCGGGACAAGAAGCTCAAGG
AGCTGCTCGTTAAGAGCTTCCCCGTCGTTCGGGTGAAGTCGCTGCGGCCC
GTGGTCATGGCCATATTGAGGAATACCCAGCACATCGATGACAAGTACCT
CAAAATCCTTGTAAGGGATCGGGAACTGTATGCGGACACGGATACGGAAG
TTAAGCGGCAGATATGGCGTGATAATCAATCGTTGTTTGGTGACGAGGTG
TCGCCTCTCCTCTCACAATATATTCGCGAGAAGGAGCACATCCTGTTTGA
TCACACCAACTTGAACAATCTGTTCTTCCACCCAACGCCCAAGGTGCGAA
GGCAGGGGGAAGTAGTCCAAAAGTTGGCCAACATGATTGGCACCAGTGTC
AAGCTGTACGATATGGTGCTGCAGTTCCTGCGCACTCTATTCCTGCGCAC
CCGCAATGTTCACTATTGCACGCTGCGTGCAGAGCTACTGATGGCCTTAC
ACGATCTCGAGGTGCAGGAGATCATCTCGATAGATCCCTGTCACAAGTTC
ACCTGGTGCCTGGACGCCTGCATAAGGGAGAAGAATGTGGACATTAAACG
TTCACGGGAGCTCCAGGGATTTCTTGACAACATCAAGCGCGGTCAGGAGC
AGGTTCTGGGCGATCTGTCCATGACTTTGTGCGATCCGTATGCCATCAAC
TTTTTGGCCACGTCGGCCATCAAGATATTGCATCACTTGATCAACAACGA
GGGCATGCCGCGTGACAATCAGATACTCATCCTGTTGTTGAGAATGTTGG
CCTTGGGCTTGAGTGCCTGGGTGATGATCGATTCGCAAGACTTTAAGGAG
CCCAAACTTGATTGCCAGGTGGTCACCAAGTTTTTGCCCGCCCTCATGTC
GTTAATGGTTGACGACCAGTGCCGCAGCTTGCACGCGAAACTACCGCCGG
ACGAGCGTGAATCTGCTCTGACCACCATCGAGCATTCGGGACCGGCACCG
GATGCCGTGGAGGCGTACATTCAAGAGAGTTCCGTGGCCAGCATATTGGC
CATGTACTATACGCTGCACACGGCGCGCCTGAAGGATCGCGTGGGCGTGT
TGCGCGTCTTGGCCATTCTGTCCGCCTGCAAAGACGACCGCGCATATGAG
GATCCCTTCCTGCACTCTCTGATTGCCCTGCTCATCCCCATGAGCGAAGA
GTTTGCCACGGAGGACTTCTGCACCACGCTCTTCGACGAGTTCATCTTTG
CCGGACTGACGCGCGAGAATGTGACCTCTCGTCACATGCTGAAACTTTTG
TGGTATGTGCACAATAAGCTGCCCGCCGGTCGTTTGGCCACATTGATGAA
GGCTATGCAGCCGACGACGGCCCACAACGAGCACATCCACAAGTTGTACG
AAATTCTGCAGGAGAGAATCGGCACCGGGGCGGCGGAGACGCCGGTCATT
GAAGCGCCGCCCATGGAGTTTGATTCGCCGCTAAAGAGTGTGCCAACGCC
AGGACCGCACTATAATGTCCAATAGCTAGAGGCACCGGCAGTCGCACCAC
CTGCGGCTGTCGTCGGATGATGATGGTTATTTGTGATGATGATGTTGATG
TTGATGATGATGATCGGAGGCCATGTATGTGGCTACCTCATATACTTCTC
TGGAGCAGCCGACCGGATGGCAATCCCCAATTAGCATGCTTGCGCAAATA
ATAATTCTACTGTTTAGACTAAACATAAAGCACTGCGACCGAGCAATCGG
ATATAGTTTACATATTTACAGAATGTATGGCTTTGTTGGCAGGCATCAAT
CAGTTGTCGCTGGCTATTATATATATTATATATTACTGTTACGCTAGTGT
AACGATCGATTCTAGTACACAATATAGAGTACAAATCTAAAAAAAAAAAA
AAAAAAA

GH10333.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
NELF-B-RA 2258 NELF-B-RA 72..2258 4..2190 10935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7618705..7620010 1471..166 6515 99.9 Minus
chrX 22417052 chrX 7617926..7618643 2188..1471 3590 100 Minus
chrX 22417052 chrX 7620082..7620250 172..4 845 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7726775..7728080 1471..166 6515 99.9 Minus
X 23542271 X 7725994..7726713 2190..1471 3600 100 Minus
X 23542271 X 7728152..7728320 172..4 845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7734873..7736178 1471..166 6515 99.9 Minus
X 23527363 X 7734092..7734811 2190..1471 3600 100 Minus
X 23527363 X 7736250..7736418 172..4 845 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:13:43 has no hits.

GH10333.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:14:40 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7620082..7620252 1..172 98   Minus
chrX 7618705..7620003 173..1471 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:39 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..1785 41..1825 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:55 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..1785 41..1825 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:12 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..1785 41..1825 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:08:27 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..1785 41..1825 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:27:47 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..1785 41..1825 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:36:14 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..2187 3..2188 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:55 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..2187 3..2188 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:12 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 39..2226 1..2188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:07 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 1..2187 3..2188 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:27:47 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
NELF-B-RA 39..2226 1..2188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:40 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
X 7725996..7726712 1472..2188 100 <- Minus
X 7726775..7728073 173..1471 100 <- Minus
X 7728152..7728322 1..172 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:40 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
X 7725996..7726712 1472..2188 100 <- Minus
X 7726775..7728073 173..1471 100 <- Minus
X 7728152..7728322 1..172 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:40 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
X 7725996..7726712 1472..2188 100 <- Minus
X 7726775..7728073 173..1471 100 <- Minus
X 7728152..7728322 1..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:12 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7620029..7620745 1472..2188 100 <- Minus
arm_X 7620808..7622106 173..1471 100 <- Minus
arm_X 7622185..7622355 1..172 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:01 Download gff for GH10333.complete
Subject Subject Range Query Range Percent Splice Strand
X 7734094..7734810 1472..2188 100 <- Minus
X 7734873..7736171 173..1471 100 <- Minus
X 7736250..7736420 1..172 98   Minus

GH10333.hyp Sequence

Translation from 1 to 1824

> GH10333.hyp
ASCLVLLNLPTNCMIMSTPAKNNNGTGLEDVNIPGQAYLREALTSCTDPL
KAIESFQLENGVLLPSLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHI
NEMGQKEPRERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYL
KILVRDRELYADTDTEVKRQIWRDNQSLFGDEVSPLLSQYIREKEHILFD
HTNLNNLFFHPTPKVRRQGEVVQKLANMIGTSVKLYDMVLQFLRTLFLRT
RNVHYCTLRAELLMALHDLEVQEIISIDPCHKFTWCLDACIREKNVDIKR
SRELQGFLDNIKRGQEQVLGDLSMTLCDPYAINFLATSAIKILHHLINNE
GMPRDNQILILLLRMLALGLSAWVMIDSQDFKEPKLDCQVVTKFLPALMS
LMVDDQCRSLHAKLPPDERESALTTIEHSGPAPDAVEAYIQESSVASILA
MYYTLHTARLKDRVGVLRVLAILSACKDDRAYEDPFLHSLIALLIPMSEE
FATEDFCTTLFDEFIFAGLTRENVTSRHMLKLLWYVHNKLPAGRLATLMK
AMQPTTAHNEHIHKLYEILQERIGTGAAETPVIEAPPMEFDSPLKSVPTP
GPHYNVQ*

GH10333.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
NELF-B-PA 594 CG32721-PA 1..594 14..607 3070 100 Plus

GH10333.pep Sequence

Translation from 40 to 1824

> GH10333.pep
MIMSTPAKNNNGTGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVL
LPSLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEPRERDK
KLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILVRDRELYADT
DTEVKRQIWRDNQSLFGDEVSPLLSQYIREKEHILFDHTNLNNLFFHPTP
KVRRQGEVVQKLANMIGTSVKLYDMVLQFLRTLFLRTRNVHYCTLRAELL
MALHDLEVQEIISIDPCHKFTWCLDACIREKNVDIKRSRELQGFLDNIKR
GQEQVLGDLSMTLCDPYAINFLATSAIKILHHLINNEGMPRDNQILILLL
RMLALGLSAWVMIDSQDFKEPKLDCQVVTKFLPALMSLMVDDQCRSLHAK
LPPDERESALTTIEHSGPAPDAVEAYIQESSVASILAMYYTLHTARLKDR
VGVLRVLAILSACKDDRAYEDPFLHSLIALLIPMSEEFATEDFCTTLFDE
FIFAGLTRENVTSRHMLKLLWYVHNKLPAGRLATLMKAMQPTTAHNEHIH
KLYEILQERIGTGAAETPVIEAPPMEFDSPLKSVPTPGPHYNVQ*

GH10333.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21119-PA 591 GF21119-PA 1..591 3..594 3084 97.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17612-PA 592 GG17612-PA 1..592 3..594 3141 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12128-PA 598 GH12128-PA 1..598 3..594 2903 93 Plus
Dgri\GH18941-PA 592 GH18941-PA 1..592 3..594 2893 93.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
NELF-B-PA 594 CG32721-PA 1..594 1..594 3070 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24199-PA 595 GI24199-PA 1..595 3..594 2889 93.1 Plus
Dmoj\GI16340-PA 587 GI16340-PA 1..587 3..594 2870 93.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14601-PA 590 GL14601-PA 1..590 3..594 3026 95.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17103-PA 590 GA17103-PA 1..590 3..594 2957 95.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17461-PA 592 GM17461-PA 1..592 3..594 3152 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24126-PA 592 GJ24126-PA 1..592 3..594 2936 95.1 Plus
Dvir\GJ15676-PA 631 GJ15676-PA 1..631 3..594 2811 87.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25347-PA 426 GK25347-PA 198..426 366..594 1178 95.2 Plus
Dwil\GK25347-PA 426 GK25347-PA 1..198 3..201 1033 98.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17513-PA 595 GE17513-PA 1..595 3..594 3112 98.7 Plus