Clone GH10344 Report

Search the DGRC for GH10344

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:103
Well:44
Vector:pOT2
Associated Gene/TranscriptCG9164-RB
Protein status:GH10344.pep: gold
Preliminary Size:4120
Sequenced Size:4394

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9164 2001-01-01 Release 2 assignment
CG9164 2001-11-29 Blastp of sequenced clone
CG9164 2003-01-01 Sim4 clustering to Release 3
CG9164 2008-04-29 Release 5.5 accounting
CG9164 2008-08-15 Release 5.9 accounting
CG9164 2008-12-18 5.12 accounting

Clone Sequence Records

GH10344.complete Sequence

4394 bp (4394 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069087

> GH10344.complete
AGCACACGGAGCACACAGCGCACAACACCCAACGAGTGCGAACCCAAGCA
TTGCGCATACGACGTGTGGGCCGAGTGGCACAAATAAATAGTTCACATTT
GTTTTGCTGCCGTTTTTTGTTTGTTTGGCCCTGTGTTGGCGATTGTTGTT
GCTGCTGCTGCTGCCTGCCACCGGATTTGTTTATTTTTTTCACAGTGATT
TTTTTTTTTGTTGCCAGTGTGTGCGCAAGTGTGCGTGTGTGTTATTGTTA
GTATCCAATGTGTTCTTGCCGTTTTTAAACAGTGAATCGCCGCGAATTGG
AGCCTTGTGATTGCCCCATTCTTATCAGCAGTTCCCTGAATTGCGATTGT
GATTGCGAATTTCTCGCTTGACATGTAGCTGCGAATTCTGGGCGTGTTTG
TCGCTGTTCGGTTGGTCGGTTGGTGGGTGGTTGTGAGCGGCGTAAAAGGG
GGGACAAGGATCCGGAATCGGTATCGGTGAGTACAACTTACATATACATA
TGTATGTACATTTATACATTTGTTGAGCAAACGCAGCAAATGATTTGTTT
ACATTCAAACGAATGGTTCTGAAAAATGAGAAATATGCGAAATGTACTAT
AAGCGATTCGATTTCTTTCGCCGCAAGAACATTGTTTATTTGATCGCATG
CATTGTTTCATCGCACATTGCCCCATTGCTGTGTTTATTTTTGATTATTC
TGCACATTTGTTTGGCTTTGGTCTAGCAATCAAAATGCATATTCATTGGG
TGAACTGCCCCTTCCACATTCGTTTGGGGGCTCGGTAACCGCTCTTGCAA
GCATTATGTAAACCTGTGGGCTGGGCCACCGATTCCACCTGCGATGCCAA
CGTTGTTTCCGAGTTTTGGGTTCTCTGGGTTTTTTCCTTTTTTTTTTTTT
GTATTTCCTCCCATTATGTTGGCTGCGCTAATGTGCTTGGCTTTTGTCTG
ATTTATGCCGCAAAACAATCAAATTATTGCCAGCCAACCCCTTCTGACCG
CCGCACATCGGTGCCGCGAAGCTGGTGGTGCTCATTTTTTATGATATCTC
TCTATTTCCCTTTTGCGGCCGCCGAGCCATTTCATTATATAGTCTCTAGC
ATGCACTGAAAAAAATATAAAATCATCAAAATCATCAAACTCATTGCATA
TTTTGTGATAAAAACTGAATGGTAGTTCTAAAACTACATAAAACCTATTA
TATATGATTAATAACATATTAGCTAGCTAATTTTTTGTTTCTTATATTAG
CTACTCCTGATCACTTGTACATAAGCGCTAGCCAGAAAAATCTATGGAAA
TTACACTCTCGCTAATTTCTCGCAGTGCACGTTCAGCTTTCCTATTTTTT
ATGCCGCTCTCCTTTTTTCCGCCTTGGGTTTTGTTTTTGTTTGCGTCTTG
TTTCAGCGCTGAACTAGTTTTTGGCCCACCACCATTCAGCACCGCGATTT
CCTCGAAGAGGGTTGGGTGGCTCGAGAAGTTCCGGGGCTGTTCGCTGGTG
TTCGTTGGACTTCCGCACTCTTCCGGGGTGGAGAGCCGTATGTCTTATAT
CATCATACAGCGGCTTTTCCGCCGGCATCCGATGGGGCAGAGTTTATCGG
TGGCTCAAGGATCCGTTTGGCCAAGGACGAGTATCCTTCGAACACCCCTC
GCCGCCTTTTTGCCCAGCTGTTGCATAAATTTTCGCATTTAGCTGCTTGT
CTTTCACATGTGTTTGTGTGTGTGTGTGTGTGTGTGCGTATGTGGGCCTA
ACATGTGTGTGTGTGTGATGGGGTGTCCTTTTGCGGATTTCGTGAGCGTT
TTATGCAGCTCAAGGAATTCCGTTGAAGGCATGACAAGGCTTTTATTCTC
TTATTCTCATTCCCCCCCTCGAATGCCCTTTTTTTGAAGGGGTATTTAAG
GCTTTGTGCAGAATAAGTCGGTTCTTATCTCAACAGGTCTAGATTATCTC
TTATCATTGTCTAAAAGGGTACTTGCCATCCTAATGCATTATTTATAAGT
ACTAAATAGAGGTCTAGAAATATTAATAGTAACAATTCTATAGTAATCTG
ATATTTTCCTAATTTTAATATTGGATGAAGAGCTACACGCCTAATGATTT
TGGACTGAATGATGATGATTGGTGTTTAGTCATCGAAGACCTTTATCAAC
GCGAATGACAAGTTATCAATCATTCGAGGACGACCCCAAAAATTAAATGA
GAGTACGCTATTCTTGTGCTACGCTGGTCTGGAATAACTTGCCTTTTGGT
GGCTTTTCTTTTCGCAATTTTCATTTGCAACCCAAACTGAAGTGCGCCCC
ATTTCCGCCGCCAACTGTCTGACTGACGGACTTGCGAGTTGTCGGGGTTA
CCGATTCCATTCTGGGCGGGGAAGGTGGGCAAATGGTCCCATTTCGGCCA
AGTCAGTCATGTTAGCCAAGCGGCTTCTGCTAGCCGCACCGCACCGCCCC
GCCACCTGGTCTGCTGTTTTTTGTTTCGTTGTCATAACAAAATAAACAGA
AAAGAAAGAAAAAAAAAATTAATTCCACGCTTCCTTGTCGCTCCTGTTCC
TGGCCAAAATACACAGATAATTGGCTTCATTAATGCGAACATGTTCATTT
GAATTATTTTTACATAAACGAGCAACGCTCAACGATGCCAGCGGCAATCC
GCAGCTAATAATAAGCCCGATGGTAATCCCAATTTCAGTAATGCAAAGAC
GGCGATATGGCACTACAAGGCTGGCGCTTTTTCGGTGTCTCGGCAACCAT
CATCATCTACATCGGCGGCGTCCTGTTCCTCTCCATGAACAACATACCCG
GATCGCATCCCAAAAGACCGCGCATCGAACGTTTCGCCGAGTTTCCCAGC
TTTCATAGTCCTCGGTTTCCGATGCCCAGCCGCAAGATGACGATACGCTG
GTGTCGCGACCTCAAGTACATAAATCGAGATCTTCCAATCTACGCGGATT
ACAAGTCCGACTTCTACACGGCCCTGCCCAGTGACGTCAGTGCTGCCCTG
CAATCGCTGCCAGCGTTGACCGCCCTGGCCAGTTTTCCTGGCAGCGGTAA
CACGTGGCTAAGGTACTTGCTCCAGCAGGCCACCGGCATCCTGACGGGCA
GCATCTACAAGGACTACGGCCTGCTGAAGACCGGCTTTCCGGCGGAGAAC
GTCTGCAACAGTTCAGTATTATTGGTGAAGACCCACGAGTGGGGCAGCAA
AGCGTGGGCGCCCTTCTCGAAAGCAATTCTTCTCGTCCGCGATCCGGAGA
AAGCGATCATCGCGGAGTTCAATCGCCAGAGTGGCGGTCACATCGGATTC
GCATCACCGGATCGCTACAAGCGCACCAAGGGAAAATACTGGCAGCAATT
CGTGAGCAACAAGCTCAAGGGCTGGGAGATGATGAACCTCAGCTGGGCGC
GCAACTTCACGGGCAGCATCAAGGTGGTGTTCTACGACGACCTGGTCCAC
CATACGGAGCGGGAGCTGCGCTCCATTCTGGACTTCCTGCAGTTCCCCAT
CAACGAGCAACTGATGCGGTGCGCCATTATGCGGAAGGAGGGCATCTTCC
GGCGGAAGAAACGTCTGTTATCTTTCGATCCCTATACGGAATCCATGAGA
GCGGAGGTGCAGAATCGACGGCGCATCGTGTACGGATTGCTGGGGCGTCA
GGAGCCGTAGAATATGCATAGGATTATCTATCTATATCTACATTTATCTA
TAAGAACTATGGGCAACGAGAAGGGATATCGAATTCGTACCACCAAAAGG
AACTAATTGAAAGCAGAGAAAAACTGAAAAGCACAATTGCAACGACAACG
AGGCACAAAGCAAAAGGAATTGCAACCGAGTATTCAAATCATCCCCAAAA
TCATCACGACTCGTAGGACCATAGATCTCACTGGGGGTCAGCAAACACAT
ACATACATACATACATACATAGGTAGTAATGCCCCAGCATGTAGTCCCGT
TTTTCCAACCAGATCGTTCCCAATCGTTTGCTGCTCGCTTGGCGCATTAG
TTCAAATTTGTTATGTTCAAACATTAGATATGGTATTTTATAGAGACGCA
TAACTTTAGGTTGATATATGTACGTACTCGTGTGTACGTATTTGGTATAG
GCTATACAACAAGGTATTATGATTCCTGATCGAATTTATGAAATTCATTA
TAGGCCATGTTGTGCTTCATCGCTCACCAAAGCTCAACTCATCCGCAACT
TATCCTTTGGTCACGTTGAGGTCCCATATTAGAATATCCTTGTAAAAAGT
TTTATACACGACTCTACAATAACTTGTGAAATATTAACAACGGAGCCTAT
TAGATAATTGTACAAAAACGAAAACCAAACCAAACAAATCGAATGAGAAA
CAATGAAGTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH10344.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9164-RA 4442 CG9164-RA 61..4436 1..4376 21865 99.9 Plus
CG9164-RC 2315 CG9164-RC 556..2251 2688..4383 8450 99.8 Plus
CG9164.a 2499 CG9164.a 553..2248 2688..4383 8450 99.8 Plus
CG9164-RC 2315 CG9164-RC 81..556 1..476 2380 100 Plus
CG9164.a 2499 CG9164.a 78..553 1..476 2380 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15272418..15275258 2841..1 14190 100 Minus
chrX 22417052 chrX 15270507..15271538 4365..3338 4945 98.8 Minus
chrX 22417052 chrX 15271674..15272042 3337..2969 1845 100 Minus
chrX 22417052 chrX 15272101..15272229 2968..2840 645 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15382546..15385386 2841..1 14190 100 Minus
X 23542271 X 15380621..15381666 4383..3338 5200 99.8 Minus
X 23542271 X 15381802..15382170 3337..2969 1845 100 Minus
X 23542271 X 15382229..15382357 2968..2840 645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15390644..15393484 2841..1 14190 99.9 Minus
X 23527363 X 15388719..15389764 4383..3338 5200 99.8 Minus
X 23527363 X 15389900..15390268 3337..2969 1845 100 Minus
X 23527363 X 15390327..15390455 2968..2840 645 100 Minus
Blast to na_te.dros performed 2019-03-15 17:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 652..703 906..850 130 73.7 Minus
TAHRE 10463 TAHRE OSV 10463bp 8112..8223 1964..2072 120 58.9 Plus
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 212..341 1124..1249 118 58 Plus

GH10344.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:06:32 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15270507..15271538 3338..4365 96 <- Minus
chrX 15271674..15272042 2969..3337 100 <- Minus
chrX 15272101..15272227 2842..2968 100 <- Minus
chrX 15272418..15273491 1768..2841 100 == Minus
chrX 15273551..15275258 1..1708 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:42 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RB 1..954 2707..3660 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:37 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RB 1..954 2707..3660 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:26:46 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RC 1..954 2707..3660 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:54 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RB 1..954 2707..3660 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:19 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RC 1..954 2707..3660 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:35 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RA 1..4365 1..4365 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:37 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RA 1..4365 1..4365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:26:46 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RD 56..4420 1..4365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:55 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RA 1..4365 1..4365 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:19 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
CG9164-RD 56..4420 1..4365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:06:32 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
X 15380639..15381666 3338..4365 100 <- Minus
X 15381802..15382170 2969..3337 100 <- Minus
X 15382229..15382355 2842..2968 100 <- Minus
X 15382546..15385386 1..2841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:06:32 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
X 15380639..15381666 3338..4365 100 <- Minus
X 15381802..15382170 2969..3337 100 <- Minus
X 15382229..15382355 2842..2968 100 <- Minus
X 15382546..15385386 1..2841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:06:32 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
X 15380639..15381666 3338..4365 100 <- Minus
X 15381802..15382170 2969..3337 100 <- Minus
X 15382229..15382355 2842..2968 100 <- Minus
X 15382546..15385386 1..2841 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:26:46 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15274672..15275699 3338..4365 100 <- Minus
arm_X 15275835..15276203 2969..3337 100 <- Minus
arm_X 15276262..15276388 2842..2968 100 <- Minus
arm_X 15276579..15279419 1..2841 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:17 Download gff for GH10344.complete
Subject Subject Range Query Range Percent Splice Strand
X 15388737..15389764 3338..4365 100 <- Minus
X 15389900..15390268 2969..3337 100 <- Minus
X 15390327..15390453 2842..2968 100 <- Minus
X 15390644..15393484 1..2841 99   Minus

GH10344.hyp Sequence

Translation from 2706 to 3659

> GH10344.hyp
MALQGWRFFGVSATIIIYIGGVLFLSMNNIPGSHPKRPRIERFAEFPSFH
SPRFPMPSRKMTIRWCRDLKYINRDLPIYADYKSDFYTALPSDVSAALQS
LPALTALASFPGSGNTWLRYLLQQATGILTGSIYKDYGLLKTGFPAENVC
NSSVLLVKTHEWGSKAWAPFSKAILLVRDPEKAIIAEFNRQSGGHIGFAS
PDRYKRTKGKYWQQFVSNKLKGWEMMNLSWARNFTGSIKVVFYDDLVHHT
ERELRSILDFLQFPINEQLMRCAIMRKEGIFRRKKRLLSFDPYTESMRAE
VQNRRRIVYGLLGRQEP*

GH10344.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9164-PD 317 CG9164-PD 1..317 1..317 1679 100 Plus
CG9164-PB 317 CG9164-PB 1..317 1..317 1679 100 Plus
CG9164-PC 317 CG9164-PC 1..317 1..317 1679 100 Plus

GH10344.pep Sequence

Translation from 2706 to 3659

> GH10344.pep
MALQGWRFFGVSATIIIYIGGVLFLSMNNIPGSHPKRPRIERFAEFPSFH
SPRFPMPSRKMTIRWCRDLKYINRDLPIYADYKSDFYTALPSDVSAALQS
LPALTALASFPGSGNTWLRYLLQQATGILTGSIYKDYGLLKTGFPAENVC
NSSVLLVKTHEWGSKAWAPFSKAILLVRDPEKAIIAEFNRQSGGHIGFAS
PDRYKRTKGKYWQQFVSNKLKGWEMMNLSWARNFTGSIKVVFYDDLVHHT
ERELRSILDFLQFPINEQLMRCAIMRKEGIFRRKKRLLSFDPYTESMRAE
VQNRRRIVYGLLGRQEP*

GH10344.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21039-PA 319 GF21039-PA 1..317 1..316 1618 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19405-PA 317 GG19405-PA 1..317 1..317 1695 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17945-PA 328 GH17945-PA 1..328 1..316 1532 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9164-PD 317 CG9164-PD 1..317 1..317 1679 100 Plus
CG9164-PB 317 CG9164-PB 1..317 1..317 1679 100 Plus
CG9164-PC 317 CG9164-PC 1..317 1..317 1679 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15414-PA 322 GI15414-PA 1..322 1..316 1522 88.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14742-PA 316 GL14742-PA 1..315 1..316 1578 91.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21586-PA 316 GA21586-PA 1..315 1..316 1574 91.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21202-PA 317 GM21202-PA 1..317 1..317 1693 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15802-PA 317 GD15802-PA 1..317 1..317 1697 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16373-PA 322 GJ16373-PA 1..322 1..316 1535 88.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20013-PA 329 GK20013-PA 1..329 1..316 1507 86.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16050-PA 317 GE16050-PA 1..317 1..317 1685 99.1 Plus