Clone GH10346 Report

Search the DGRC for GH10346

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:103
Well:46
Vector:pOT2
Associated Gene/Transcripth-cup-RA
Protein status:GH10346.pep: gold
Preliminary Size:1534
Sequenced Size:1517

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6130 2001-01-01 Release 2 assignment
CG6130 2001-07-04 Blastp of sequenced clone
CG6130 2003-01-01 Sim4 clustering to Release 3
CG6130 2008-04-29 Release 5.5 accounting
CG6130 2008-08-15 Release 5.9 accounting
CG6130 2008-12-18 5.12 accounting

Clone Sequence Records

GH10346.complete Sequence

1517 bp (1517 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051426

> GH10346.complete
AAATTCAACGTGAGCAATCCAAACCAGATTGGACGGATGGATAGCTCGGT
GCCATCCGGAGCCGAAAGCGGTCTTATCAAGGAGTACAAGGACTTTGCCA
AATGCCTGGACGAACTGGAGTTCAAGACCGATGAGCTGCTAATCGATGCT
AAAATGGTGGATCAGGAGTTGGCCAACTGCCACAAGTTTCGCGAGGATCA
GCTGCTGAAGCATCTGACGGAGAAGAACGACGACGACGAGCAGATGCAGT
TGCTGCGGGAAAACATCGAGCTCAAGGCGACCGGCGTTGAGTTCCAACAC
GGCATTGAGCTGATCATGGAGAAGTACCGTGAGCACAGCGAAGGGGACAT
GTTAATCGATACCTACCAACTGAGGGAGCACTACCTGGCCGGTTTGTCGA
AGGTGGTCGAAGAGCAGGATGCCCGCATCGAGCGTATGGTTGATGTGATG
AAGCTAACTGTCGACTTCGAGGACCGGAGCAGTGCCGAGAACCAGCAGAT
CATTTGCCAGCTGACTGATGAAAATGAGCAGTTGCGTCGTCAGTTGCAGA
TCAGTACCACCGATGAGCTGTTCCGCCAGGGAGCACTGAGCTCCAGCGAA
AGTAGCACTCAGATCGGACCAAACGATTCTTTGGATTCGAGTGCCACCCG
GGAGAATAGCATCTACAGCATAGATAGCTTCCTCTCCTGCCTTTCGCCGA
GCAGCGTGGAGGATGATTCGGAGTGCTCATCCAACAATTCGCTGCTGAGT
GAGCTGGAAGTCACTTGCTTTATTGAGGAGGCTCTGGCCGAGAAGCCCGA
GGAGTAGACCTACAACATGGACGAATAGGCACAACACACGTTCCTGCCCC
ACTGCAACACTGGCTGTTTACGTTGATTGAATACTTGGTACTTGGTACCC
GAAATATAATTTCATTCGAGGCTACACTATCCACACACTACTAGCTGTCT
GTTAGCTGTTGCTGTTCTTTCATAAAGATCTATATACCATTTGCACTCCT
AGGAGATTAGTTGCACTTAAATACCTGCTCAATCTTTGCCATTATGATAT
CAATCTCGGATCCTTGGTCCTGGTGGCTGATTGTCGGTGCCCAAGTGACG
GTGGAGCTGCTGGCCGATGTAGGAATGGTCGCGCCGCCACCGGAGGACAC
GCTCCCCATTCCGGAGCAGGCCGAGCGGGATGCCTGTTTGGCCTTCAGAG
CCGACGTCAGTTCGATTTGCAGCTCCTCGCAGCGCACATTTTCCAGCGCA
ACCTATGGATTTTTAGAGTTCAATACGATTGAGTAGATATGATTTGAGGG
CATATAGTCACCTTCTTTTCCAGTTCCCGGGCTCTCGACTGCAGATTCTC
CACCGCCTCGGCATCGGGACGAGCGCTACCGCTCAGATTGCGTATTTGTG
CCAGGGTTTCCTAGGATAGCATATATATATAAATACAGATAAACAAAATG
TTCTATAAATCCTATAACAATACAATTGCAATATACTGTTCTTAAAATCA
AAAAAAAAAAAAAAAAA

GH10346.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-RA 1545 h-cup-RA 47..1545 1..1499 7495 100 Plus
CG14867-RA 517 CG14867-RA 270..517 1254..1007 1240 100 Minus
CG14867.c 580 CG14867.c 333..580 1254..1007 1240 100 Minus
CG14867-RA 517 CG14867-RA 171..273 1412..1310 515 100 Minus
CG14867.c 580 CG14867.c 234..336 1412..1310 515 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11206042..11207541 1499..1 7360 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:42:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15381404..15382905 1502..1 7510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15122235..15123736 1502..1 7510 100 Minus
Blast to na_te.dros performed 2019-03-15 21:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1201..1262 1420..1475 126 71 Plus

GH10346.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:35:55 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11206042..11207541 1..1499 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:32:43 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 1..771 37..807 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:28:19 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 1..771 37..807 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:52:56 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 1..771 37..807 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:01:39 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 1..771 37..807 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:51 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 1..771 37..807 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:28:13 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 47..1545 1..1499 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:28:19 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 47..1545 1..1499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:52:56 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 47..1545 1..1499 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:01:39 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 47..1545 1..1499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:51 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 47..1545 1..1499 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:55 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15381407..15382905 1..1499 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:55 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15381407..15382905 1..1499 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:55 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15381407..15382905 1..1499 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:52:56 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11207129..11208627 1..1499 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:39:34 Download gff for GH10346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15122238..15123736 1..1499 100   Minus

GH10346.hyp Sequence

Translation from 1 to 806

> GH10346.hyp
KFNVSNPNQIGRMDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDA
KMVDQELANCHKFREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQH
GIELIMEKYREHSEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVM
KLTVDFEDRSSAENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSE
SSTQIGPNDSLDSSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLS
ELEVTCFIEEALAEKPEE*

GH10346.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-PA 256 CG6130-PA 1..256 13..268 1290 100 Plus
Fgop2-PB 315 CG10158-PB 79..225 83..219 172 32.4 Plus
Fgop2-PA 315 CG10158-PA 79..225 83..219 172 32.4 Plus

GH10346.pep Sequence

Translation from 36 to 806

> GH10346.pep
MDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDAKMVDQELANCHK
FREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQHGIELIMEKYREH
SEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVMKLTVDFEDRSSA
ENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSESSTQIGPNDSLD
SSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLSELEVTCFIEEAL
AEKPEE*

GH10346.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16702-PA 282 GF16702-PA 1..260 1..254 552 47.5 Plus
Dana\GF14468-PA 322 GF14468-PA 79..181 71..173 156 36.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20552-PA 263 GG20552-PA 1..256 1..256 969 74.6 Plus
Dere\GG23568-PA 315 GG23568-PA 79..181 71..173 162 37.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18515-PA 242 GH18515-PA 2..232 3..236 310 35.4 Plus
Dgri\GH11363-PA 334 GH11363-PA 79..181 71..173 150 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-PA 256 CG6130-PA 1..256 1..256 1290 100 Plus
Fgop2-PB 315 CG10158-PB 79..225 71..207 172 32.4 Plus
Fgop2-PA 315 CG10158-PA 79..225 71..207 172 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24360-PA 237 GI24360-PA 2..237 5..241 330 35.7 Plus
Dmoj\GI17740-PA 363 GI17740-PA 79..181 71..173 151 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23060-PA 255 GL23060-PA 7..241 7..252 388 39.9 Plus
Dper\GL25600-PA 325 GL25600-PA 79..181 71..173 148 36.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19377-PA 255 GA19377-PA 7..241 7..252 417 41.1 Plus
Dpse\GA10119-PA 325 GA10119-PA 79..181 71..173 148 36.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25772-PA 263 GM25772-PA 1..256 1..256 1216 91 Plus
Dsec\GM13731-PA 315 GM13731-PA 79..181 71..173 161 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20350-PA 263 GD20350-PA 1..256 1..256 1218 91 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24370-PA 240 GJ24370-PA 7..235 9..241 367 40.1 Plus
Dvir\GJ17564-PA 338 GJ17564-PA 79..181 71..173 154 37.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11436-PA 266 GK11436-PA 9..246 8..252 484 43.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26377-PA 263 GE26377-PA 1..256 1..256 998 77 Plus
Dyak\GE18391-PA 315 GE18391-PA 79..181 71..173 162 37.9 Plus