BDGP Sequence Production Resources |
Search the DGRC for GH10346
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 103 |
Well: | 46 |
Vector: | pOT2 |
Associated Gene/Transcript | h-cup-RA |
Protein status: | GH10346.pep: gold |
Preliminary Size: | 1534 |
Sequenced Size: | 1517 |
Gene | Date | Evidence |
---|---|---|
CG6130 | 2001-01-01 | Release 2 assignment |
CG6130 | 2001-07-04 | Blastp of sequenced clone |
CG6130 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6130 | 2008-04-29 | Release 5.5 accounting |
CG6130 | 2008-08-15 | Release 5.9 accounting |
CG6130 | 2008-12-18 | 5.12 accounting |
1517 bp (1517 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051426
> GH10346.complete AAATTCAACGTGAGCAATCCAAACCAGATTGGACGGATGGATAGCTCGGT GCCATCCGGAGCCGAAAGCGGTCTTATCAAGGAGTACAAGGACTTTGCCA AATGCCTGGACGAACTGGAGTTCAAGACCGATGAGCTGCTAATCGATGCT AAAATGGTGGATCAGGAGTTGGCCAACTGCCACAAGTTTCGCGAGGATCA GCTGCTGAAGCATCTGACGGAGAAGAACGACGACGACGAGCAGATGCAGT TGCTGCGGGAAAACATCGAGCTCAAGGCGACCGGCGTTGAGTTCCAACAC GGCATTGAGCTGATCATGGAGAAGTACCGTGAGCACAGCGAAGGGGACAT GTTAATCGATACCTACCAACTGAGGGAGCACTACCTGGCCGGTTTGTCGA AGGTGGTCGAAGAGCAGGATGCCCGCATCGAGCGTATGGTTGATGTGATG AAGCTAACTGTCGACTTCGAGGACCGGAGCAGTGCCGAGAACCAGCAGAT CATTTGCCAGCTGACTGATGAAAATGAGCAGTTGCGTCGTCAGTTGCAGA TCAGTACCACCGATGAGCTGTTCCGCCAGGGAGCACTGAGCTCCAGCGAA AGTAGCACTCAGATCGGACCAAACGATTCTTTGGATTCGAGTGCCACCCG GGAGAATAGCATCTACAGCATAGATAGCTTCCTCTCCTGCCTTTCGCCGA GCAGCGTGGAGGATGATTCGGAGTGCTCATCCAACAATTCGCTGCTGAGT GAGCTGGAAGTCACTTGCTTTATTGAGGAGGCTCTGGCCGAGAAGCCCGA GGAGTAGACCTACAACATGGACGAATAGGCACAACACACGTTCCTGCCCC ACTGCAACACTGGCTGTTTACGTTGATTGAATACTTGGTACTTGGTACCC GAAATATAATTTCATTCGAGGCTACACTATCCACACACTACTAGCTGTCT GTTAGCTGTTGCTGTTCTTTCATAAAGATCTATATACCATTTGCACTCCT AGGAGATTAGTTGCACTTAAATACCTGCTCAATCTTTGCCATTATGATAT CAATCTCGGATCCTTGGTCCTGGTGGCTGATTGTCGGTGCCCAAGTGACG GTGGAGCTGCTGGCCGATGTAGGAATGGTCGCGCCGCCACCGGAGGACAC GCTCCCCATTCCGGAGCAGGCCGAGCGGGATGCCTGTTTGGCCTTCAGAG CCGACGTCAGTTCGATTTGCAGCTCCTCGCAGCGCACATTTTCCAGCGCA ACCTATGGATTTTTAGAGTTCAATACGATTGAGTAGATATGATTTGAGGG CATATAGTCACCTTCTTTTCCAGTTCCCGGGCTCTCGACTGCAGATTCTC CACCGCCTCGGCATCGGGACGAGCGCTACCGCTCAGATTGCGTATTTGTG CCAGGGTTTCCTAGGATAGCATATATATATAAATACAGATAAACAAAATG TTCTATAAATCCTATAACAATACAATTGCAATATACTGTTCTTAAAATCA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
h-cup-RA | 1545 | h-cup-RA | 47..1545 | 1..1499 | 7495 | 100 | Plus |
CG14867-RA | 517 | CG14867-RA | 270..517 | 1254..1007 | 1240 | 100 | Minus |
CG14867.c | 580 | CG14867.c | 333..580 | 1254..1007 | 1240 | 100 | Minus |
CG14867-RA | 517 | CG14867-RA | 171..273 | 1412..1310 | 515 | 100 | Minus |
CG14867.c | 580 | CG14867.c | 234..336 | 1412..1310 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11206042..11207541 | 1499..1 | 7360 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15381404..15382905 | 1502..1 | 7510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15122235..15123736 | 1502..1 | 7510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1201..1262 | 1420..1475 | 126 | 71 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11206042..11207541 | 1..1499 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6130-RA | 1..771 | 37..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
h-cup-RA | 1..771 | 37..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
h-cup-RA | 1..771 | 37..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6130-RA | 1..771 | 37..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
h-cup-RA | 1..771 | 37..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6130-RA | 47..1545 | 1..1499 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
h-cup-RA | 47..1545 | 1..1499 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
h-cup-RA | 47..1545 | 1..1499 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6130-RA | 47..1545 | 1..1499 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
h-cup-RA | 47..1545 | 1..1499 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15381407..15382905 | 1..1499 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15381407..15382905 | 1..1499 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15381407..15382905 | 1..1499 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11207129..11208627 | 1..1499 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15122238..15123736 | 1..1499 | 100 | Minus |
Translation from 1 to 806
> GH10346.hyp KFNVSNPNQIGRMDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDA KMVDQELANCHKFREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQH GIELIMEKYREHSEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVM KLTVDFEDRSSAENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSE SSTQIGPNDSLDSSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLS ELEVTCFIEEALAEKPEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
h-cup-PA | 256 | CG6130-PA | 1..256 | 13..268 | 1290 | 100 | Plus |
Fgop2-PB | 315 | CG10158-PB | 79..225 | 83..219 | 172 | 32.4 | Plus |
Fgop2-PA | 315 | CG10158-PA | 79..225 | 83..219 | 172 | 32.4 | Plus |
Translation from 36 to 806
> GH10346.pep MDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDAKMVDQELANCHK FREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQHGIELIMEKYREH SEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVMKLTVDFEDRSSA ENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSESSTQIGPNDSLD SSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLSELEVTCFIEEAL AEKPEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16702-PA | 282 | GF16702-PA | 1..260 | 1..254 | 552 | 47.5 | Plus |
Dana\GF14468-PA | 322 | GF14468-PA | 79..181 | 71..173 | 156 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20552-PA | 263 | GG20552-PA | 1..256 | 1..256 | 969 | 74.6 | Plus |
Dere\GG23568-PA | 315 | GG23568-PA | 79..181 | 71..173 | 162 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18515-PA | 242 | GH18515-PA | 2..232 | 3..236 | 310 | 35.4 | Plus |
Dgri\GH11363-PA | 334 | GH11363-PA | 79..181 | 71..173 | 150 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
h-cup-PA | 256 | CG6130-PA | 1..256 | 1..256 | 1290 | 100 | Plus |
Fgop2-PB | 315 | CG10158-PB | 79..225 | 71..207 | 172 | 32.4 | Plus |
Fgop2-PA | 315 | CG10158-PA | 79..225 | 71..207 | 172 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24360-PA | 237 | GI24360-PA | 2..237 | 5..241 | 330 | 35.7 | Plus |
Dmoj\GI17740-PA | 363 | GI17740-PA | 79..181 | 71..173 | 151 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23060-PA | 255 | GL23060-PA | 7..241 | 7..252 | 388 | 39.9 | Plus |
Dper\GL25600-PA | 325 | GL25600-PA | 79..181 | 71..173 | 148 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19377-PA | 255 | GA19377-PA | 7..241 | 7..252 | 417 | 41.1 | Plus |
Dpse\GA10119-PA | 325 | GA10119-PA | 79..181 | 71..173 | 148 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25772-PA | 263 | GM25772-PA | 1..256 | 1..256 | 1216 | 91 | Plus |
Dsec\GM13731-PA | 315 | GM13731-PA | 79..181 | 71..173 | 161 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20350-PA | 263 | GD20350-PA | 1..256 | 1..256 | 1218 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24370-PA | 240 | GJ24370-PA | 7..235 | 9..241 | 367 | 40.1 | Plus |
Dvir\GJ17564-PA | 338 | GJ17564-PA | 79..181 | 71..173 | 154 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11436-PA | 266 | GK11436-PA | 9..246 | 8..252 | 484 | 43.7 | Plus |